BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478500
Length=3183
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11560.2 | Symbols: | LETM1-like protein | chr3:3639435-364... 4626 0.0
AT5G06220.2 | Symbols: | LETM1-like protein | chr5:1879937-188... 1199 0.0
AT3G11570.1 | Symbols: TBL8 | TRICHOME BIREFRINGENCE-LIKE 8 | c... 298 2e-79
AT1G64563.1 | Symbols: | other RNA | chr1:23975085-23978335 RE... 89.8 2e-16
> AT3G11560.2 | Symbols: | LETM1-like protein | chr3:3639435-3645812
FORWARD LENGTH=3043
Length=3043
Score = 4626 bits (2505), Expect = 0.0
Identities = 2761/2885 (96%), Gaps = 16/2885 (1%)
Strand=Plus/Plus
Query 29 TTTCTCACAAAACTAAAATCGTG-AAGAATAATTTCCCGCTTCATGTAGATGGCAGTTAG 87
|||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 70 TTTCTCACCAAACCAAAATCGTGAAAGAATATTTTCCCGCTTCATGTAGATGGCAGCTAG 129
Query 88 ACTACAACGACCTGGTCTTGTATCCTCAAGCTCTTCTTCAAAACCATGTCTGCCAAGGAT 147
||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 130 ACTACAACGACCTGGGCTTGTATCCTCAAGCTCTACTTCAAAACCATGTCTTCCAAGGAT 189
Query 148 GTCCATTGTTACTTTCATATCTTGCAAAAAGACGGTACACTTGGAGTACTTATCTAATTG 207
||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||
Sbjct 190 GTCCATTGTTACTTTCATATCCTGCAAAAGGACTGTACACTTGGAGTACTTATCAAATTG 249
Query 208 CTGGAGCAATCCCAGGAGCCAATTGTTTGTGAGATATGGTTTTTTCGAAAGGAGCAAAAT 267
|| ||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |
Sbjct 250 CTTGAGCAATCCGAGGAGCCAATTGTTTGTTAGATATGGTTTTCTGGAAAGGAGC---A- 305
Query 268 TTGTCTTAGCAAGAAGAAATCACAGAGGCTGGTCTTGGCATCTGCTGAAGATGGAGTGGC 327
| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 306 -------A-CAAGAAGAAATCACAGAGGCTGGTCTTGGCATCTGCTGAAGATGGAGTAGC 357
Query 328 TATCAATGGAAGTCCTAAGCCAAGATCTAGTAGTAATTTGGGGGAAATGAGGACTAATTT 387
||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 358 TATTAATGGAAGTCCTCAGCCAAGATCTAGTAGTAATTTGGAGGACATGAGGACTAGTTT 417
Query 388 CACCGGATCATCACAAGATGAAAACAGCTCTAATGGACTTATCCAGTCTTTGCATGATGC 447
||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 418 CACCGGATCATTACAAGACGAAAACAATTCTAATGGACTTAACCAGTCTTTGCATGATGC 477
Query 448 TGCTAGATCTATTGAATTGGCAGTTAGAGAGAAGATTACTCCGTCCAGATTTCCATGGTT 507
||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |||||
Sbjct 478 TGCTAGATCTATTGAATTGGCTGTTAAAGAGAAGATTACTCCGTCCAGATTTTCGTGGTT 537
Query 508 TCCTGCGACCTGGCTTGGTGCTGATAAATATGCATGGGTGAAGACTCTTTCGTATCAGGC 567
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCTTCGACTTGGCTTGGTGCTGATAAATATGCATGGGTGAAGACTCTTTCGTATCAGGC 597
Query 568 TTCTCTGTACTCCTTACTACAAGCAGTTAATGAGATTTCATCTAGAGGCAATTACAGAGA 627
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 TTCTCTGTACTCCTTACTGCAAGCAGTAAATGAGATTTCATCTAGAGGCAATTACAGAGA 657
Query 628 CGAGGATATTAATGTCTTTGTTCAAAGGAGCTTATCACGCCAAGCTGCTCCCCTTGAGAA 687
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CGAGGATATTAATGTCTTTGTTCAAAGAAGCTTATCACGCCAAGCTGCTCCCCTTGAGAA 717
Query 688 TATGATGCGAGAGAATCTATCTTCCAAACATCCTAAAGCCTATGAATGGTTTTGGTCCGA 747
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 718 TATGATGCGAGAGAATCTTTCTTCCAAGCATCCTAAAGCCTATGAATGGTTTTGGTCCGA 777
Query 748 GCAACTTCCTTCCGTGGTGACATCTTTTGTGAATTATATTGAGGGGGACCAACGTTTTGT 807
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 GCAAGTTCCTTCCGTGGTGACATCTTTTGTGAATTATCTTGAGGGGGACCAACGTTTTGT 837
Query 808 TGCTGCCACTTCTGTCTATGCAAAAGGAAAGTCCGCAGCCGCAAGTAATGAGATTGAGGT 867
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 838 TGCTGCCACTTCTGTCTATGCAAAAGGAAAGTCCGCAGCTGCAAGTAATGAGATTGAAGT 897
Query 868 GTCACTTCTCATGCTTGTGCTCAATTGCATTGCAGCAATCACGAAAGTTGGCCCGGCAAA 927
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 GTCACTTCTCATGCTTGTACTCAATTGCATTGCAGCAATCACGAAAGTTGGCCCAGCAAA 957
Query 928 ATTTTCCTGCCCGCCCTTCTTCTCTATGATTCCAGATACAACTGGAAGATTGATGGAAAA 987
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATTTTCCTGCCCACCCTTCTTCTCTATGATTCCAGATACAACTGGAAGATTGATGGAAAA 1017
Query 988 ACTTGTAGACTTCGTTCCACTCCCTCAAGCGTATCATTCAATCAAAAGCATAGGCCTACA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACTTGTAGACTTCGTTCCACTCCCTCAAGCGTATCATTCAATCAAAAGCATAGGCCTACA 1077
Query 1048 AAGAGAGTTTCTTACTCATTTTGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT 1107
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAGAGAATTTCTTACTCATTTTGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT 1137
Query 1108 TGCTACAGATGAAGTTGTTTTCTGGATCGATCTTATACAGAAACAACTGCAGCGGGCTAT 1167
|| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1138 TGATACAGATGAAGTTATTTTCTGGGTTGATCTTATACAGAAACAACTGCAGCGGGCTAT 1197
Query 1168 AGATAGGGAGAAAATATGGTCAAAGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAG 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGATAGGGAGAAAATATGGTCAAAGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAG 1257
Query 1228 AGATTTAGCAATTTTTGGATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGATTTAGCAATTTTTGGATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGC 1317
Query 1288 TGCAAATGGTTTTGATTCTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTTATTGG 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGCAAATGGTTTTGATTCTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTTATTGG 1377
Query 1348 GGGCAGCGTCCTGTACTATCCTCAACTTTCATCCATCAGTTCATACCAGCTGTATGTAGA 1407
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1378 AGGCAGCGTCCTGTACTATCCTCAACTTTCAGCCATCAGTTCATACCAGCTGTATGTAGA 1437
Query 1408 GGTTGTTTGCGAAGAACTAGAATGGATTCCTTTCTATCCAGACAATACTGGCACACAGCC 1467
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1438 GGTTGTTTGCGAAGAACTAGAATGGATTCCTTTCTATCCAAACAATACTGGAACACAGCC 1497
Query 1468 TCCAAAACAATCACATGGGCATAAGAGCAAAACAGAAGGACCACCTAATTATGAAGTTAT 1527
||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 1498 ACCAAACCAATCACATGGGCATAAGACCAAACCAGAAGGACCACCCAATTATGAAGTTAT 1557
Query 1528 TCCCCAACTGTTGGATGTTTGCTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATG 1587
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TCCCCAACTGTTGGATGTTTGTTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATG 1617
Query 1588 GCCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGGGCACAAAACTTT 1647
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1618 GCCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCTAAGGGGCACAAGACTTT 1677
Query 1648 GATTCGGTGTAAAGAAGAACTGGGGATATTAAAGAATGCATCATCAATTGTTAGAGAGTC 1707
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GGTTCGGTGTAAAGAAGAACTGGGGATATTAAAGAATGCATCATCAATTGTTAGAGAGTC 1737
Query 1708 GAACTCATTTGACAAGGCCCTAGAAAGTGTAGATGAAGCCCTCGTGAGACTGGAAAGCCT 1767
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1738 GAACTCATTTGACAAGGCCCTAGAAAGTGTAGATGAGGCCCTCGTTAGACTGGAAAGCCT 1797
Query 1768 GCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGAAAGGAACAAATAAAAGCCGCTTG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1798 GCTACAGGAGTTGTATGTATCAAACTCATCGTCTGGAAAGGAACAAATAAAAGCCGCGTG 1857
Query 1828 CTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAGGCTGAATTTCTGGAGGCAACTTT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CTCTGACCTAGAGAAAATACGGAAGCTTAAGAAAGAGGCTGAATTTCTGGAGGCAACTTT 1917
Query 1888 CAGAGCCAAAGCAGCTTCCTTGCAACAGGGAGGTGACAAAAATGATTCTCAGGAATCCTA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1918 CAGAGCCAAAGCAGCTTCCTTGCAACAGGGAGGTGACAAAAATGATTCTCAAGAATCCTA 1977
Query 1948 CGAGGTACAAAAACGGTATTTTAAAGGGAAAGACACAAAAAACGCAATTAGTTCTGAGGA 2007
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1978 CGAGGTACAAAAACGGTATTTTAAAGGGAAAGACACAAAGAACGCAAATAGTTCTGAGGA 2037
Query 2008 TCAAGGCAAAAGTATAAGTCGTGGATTCTGGGGATTCTTTGTACGGCCTCCAAGGAAGAA 2067
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2038 TCAAGGCAAAAGTATAAGTCGTGGATTCTGGGGATTCTTTGTACGGCCTTCAAGGAAGAA 2097
Query 2068 GCTTGATCCTGAGATATCAGGAGGTGAATATATTGGGAAACCCAGTGGAAACTTACTTAG 2127
||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 2098 GCTTGATCCTGAGTTATCGGGAGATGAATATATTGGGAAATCCAGTGGAAACTTACTTAG 2157
Query 2128 CATAGACTCAGAACCAAATGAGATCAGCCGATTCGAAATTCTAAGGAACGAGCTAATAGA 2187
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 CATAGACTCGGAACCAATTGAGATCAGCCGATTCGAAATTCTAAGGAACGAGCTAATAGA 2217
Query 2188 ACTGGAAAAGCGGGTCAAAAGAAGCACTGATCAGTCAGTAGATGAGGAGGAAGTAATATC 2247
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2218 ACTCGAAAAGCGGGTCAAAAGAAGCACTGATCAGTCAGTAGATGAGGAGGAATTAATCTC 2277
Query 2248 TGAGGATACTCCTCAAGCAAGCAGTAGAACGCAAAGTGTTCAGTTGGTTCAGACTCCCAT 2307
||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2278 TGAGGATACACCTCAATCAAGCAGTAGAACGGAAAGTGTTCAGTTGGTTCAGACTCCCAA 2337
Query 2308 GAAGGAAAACATAATTGAGAAAACTCTTCAAAAGCTAAGAGAAGCCTCCACGGATGTGTG 2367
|||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2338 GAAGGAAAACATGATGGAGAAAACTCTTCAAAAGCTAAGAGAAGCCACCACGGACGTGTG 2397
Query 2368 GCAAGGTACTCAACTTCTTGCCATTGATTCAGCAGCTGCTGTGCAGCTACTTCGGAGATC 2427
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2398 GCAAGGTACTCAACTTCTTGCCATTGATTCAGCAGCTGCAGTGCAGCTACTTCGGAGGTC 2457
Query 2428 TCTGATTGGTGATGAATTAACAGAAAAAGAAAAGAAAGCCCTGCGCAGAACCATGACTGA 2487
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2458 TCTGATTGGTGATGAATTAACAGGAAAAGAAAAGAAAGCCCTGCGCAGAACCATGACTGA 2517
Query 2488 CTTGGCATCAGTTATTCCCATCGGTATTCTAATGCTTCTTCCGGTTACAGCGGTTGGTCA 2547
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2518 CCTGGCGTCAGTTATTCCCATCGGTATTCTAATGCTTCTTCCTGTTACAGCGGTTGGTCA 2577
Query 2548 CGCAGCCATGCTGGCTGGAATTCAGAGATATGTACCCAG-CCTGATTCCTTCCACATATG 2606
||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 2578 CGCTGCCATGCTGGCTGGAATTCAGAGATATGTACC-AGGCCTGATTCCTTCCACATACG 2636
Query 2607 GGTCTGAAAGGTTGAACCTATTGAGACAGCTTGAGAAAATCAAGGAACTGCAAACAAATG 2666
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 GGTCCGAAAGGTTGAACCTATTGAGACAGCTTGAGAAAATCAAGGAACTGCAAACAAATG 2696
Query 2667 AAACTGAGACCGAAGAAGGCGTCGAGGAGATAGCATTATGACTAGGAAGGAAGCAATATA 2726
|||| |||| |||||||||||| ||||| |||||||||||| ||| ||||||||||||||
Sbjct 2697 AAACCGAGAGCGAAGAAGGCGTAGAGGAAATAGCATTATGAGTAG-AAGGAAGCAATATA 2755
Query 2727 TACTTGTACCTCTATTCATTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCGTAGAGAAT 2786
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2756 GACTTGTACCTCTATTCACTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCATAGAGAAT 2815
Query 2787 CCCGTTCCATGTGTCAGGTACACCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATC 2846
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2816 CTCGTTCCATGTGTCCGGTACTCCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATC 2875
Query 2847 TTCAGGAGTTCCCGGTTCTCGATACCGTGAAGGATGAGCATCTTTCCTGAACTCGGTCAG 2906
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2876 TTCAGGAGTTCCCGGTTCTCGATACCGCGAAGGATGAGCATCTTTCCTGAACTCGGTCAG 2935
Query 2907 ATATG 2911
|||||
Sbjct 2936 ATATG 2940
> AT5G06220.2 | Symbols: | LETM1-like protein | chr5:1879937-1885643
FORWARD LENGTH=3119
Length=3119
Score = 1199 bits (649), Expect = 0.0
Identities = 1130/1357 (83%), Gaps = 54/1357 (4%)
Strand=Plus/Plus
Query 301 CTTGGCATCTGCTGAAGATGGAGTGGCTATCAATGGAAGTCCTAAGCCAAGATCTAGTAG 360
||| |||||||||||||||||||||||| | ||||| || | ||| || |||| |
Sbjct 350 CTT-GCATCTGCTGAAGATGGAGTGGCTGTTAATGG--GT-C-AAG---AG--CTAG-CG 398
Query 361 -TAAT-TTGGGGGAAATGAGGACTAATTTCACCGGATCATC-ACAAGATGAAAACAGCTC 417
| || || ||| |||||| | || ||| |||||| | |||||||||| | ||||
Sbjct 399 ATGATGTT-CAGGAGATGAGGGCCAAACTCAGTGGATCA-CTACAAGATGAATATAGCTG 456
Query 418 TAATGGACTTATCCAGTCTTTGCATGATGCTGCTA-GATCTATTGAATTGGCAGTTAGAG 476
| || |||||| |||||||||||||||||||| | || || ||||| |||| ||| ||
Sbjct 457 TGGTGAACTTATTCAGTCTTTGCATGATGCTGCCAGGA-CTTTTGAACTGGCTCTTAAAG 515
Query 477 AGAAGATTA-CTCCGTCCAGATTTCCATGGTTTCCTGCGA-CCTGGCTTGGTGCTGATA- 533
|||||| || || | || ||||| ||||||||| | || | ||||||| || | |||||
Sbjct 516 AGAAGA-TATCTTCTTCGAGATTACCATGGTTTTCAGC-AGCCTGGCTCGGAGTTGATAG 573
Query 534 AATATGCATGGGTGAAGAC-TCTTTCGTATCAGGCTTCTC-TGTACTCCTTACTACAAGC 591
|| |||||||||| ||||| | |||| ||||||||||| | |||| | ||||||||||||
Sbjct 574 AA-ATGCATGGGTTAAGACGT-TTTCTTATCAGGCTTC-CGTGTATTGCTTACTACAAGC 630
Query 592 AGTTAATGAGATTTCATCTAGAGGCAATTACAGAGACGAGGATATTAATGTCTTTGTTCA 651
| |||||| ||||||||||||| || | |||||||| ||| ||||||||||||| ||
Sbjct 631 TGCAAATGAGGTTTCATCTAGAGGAAACAATAGAGACGATGATCTTAATGTCTTTGTACA 690
Query 652 AAGGAGCTTATCACGCCAAGCTGCTCCCCTTGAGAATATGATGCGAGAGAATCTATCTTC 711
|||||| |||||||||||||||||||| ||||| | ||||||||| || || ||||||||
Sbjct 691 AAGGAGTTTATCACGCCAAGCTGCTCCTCTTGATAGTATGATGCGGGATAAACTATCTTC 750
Query 712 CAAACATCCTAAAGCCTATGAATGGTTTTGGTCCGAGCAACTTCCTTCCGTGGTGACATC 771
|| |||||| ||||| |||| ||||||||||| | |||| ||||||| | |||||||||
Sbjct 751 CAGTCATCCTGAAGCCAATGAGTGGTTTTGGTCTGGGCAAGTTCCTTCGGCGGTGACATC 810
Query 772 TTTTGTGAATTATATTGAGGGGGACCAACGTTTTGTTGCTGCCACTTCTGTCTATG-CAA 830
||||||||||| | |||||||||||||||| |||||| |||| ||||||||||||| |||
Sbjct 811 TTTTGTGAATTGTTTTGAGGGGGACCAACGATTTGTTTCTGCTACTTCTGTCTATGTCAA 870
Query 831 AAGGAAAGTCCGCAGCCGCAAGTAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTCA 890
|| | || ||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 871 AA-GCAATTCCACAGCTGCAAGCAATGAGATTGAGGTGTCACTTCTCATGCTTGTGCTGA 929
Query 891 ATTGCATTGCAGCAATCACGAAAGTTGGCCCGGCAAAATTTTCCTGCCCGCCCTTCTTCT 950
||||||| |||||| | || ||| ||||||| ||||| |||| |||||||||||||| |
Sbjct 930 ATTGCATCGCAGCAGTGACAAAACTTGGCCCAACAAAACTTTCGTGCCCGCCCTTCTTTT 989
Query 951 CTATGATTCCAGATACAACTGGAAGATTGATGGAAAAACTTGTAGACTTCGTTCCACTCC 1010
|| ||||||||||||| || || ||||||||||| ||| |||| | || |||||||| |
Sbjct 990 CTGTGATTCCAGATACTACAGGGAGATTGATGGACAAATTTGTTGGGTTTGTTCCACTTC 1049
Query 1011 CTCA-AGCGTATCATTCAATCAAAAGCATAGGCCTACAAAGAGAGTTTCTTACT-CATTT 1068
|||| | | ||||||||||| |||| | | || || | ||||| |||||| || |||||
Sbjct 1050 CTCAGACC-TATCATTCAATGAAAACCCTTGGTCTTCGCAGAGAATTTCTT-CTTCATTT 1107
Query 1069 TGGTCCTCGCGCAGCAGTGTGCAGAGTTAATGGTGACAT-TGCTACAGATGAAGTTGTTT 1127
||| ||||| ||||||| |||||||| || ||||| | || ||||||||| ||||| |
Sbjct 1108 TGGACCTCGGGCAGCAGCATGCAGAGTAAAAAGTGAC-TGTGATACAGATGAGGTTGTCT 1166
Query 1128 TCTGGATCGATCTTATACAGAAAC-AACTGCAGCGGGCTATAGATAGGGAGAAAATATGG 1186
||||| | ||||||||||| |||| |||||| | ||||||| ||| ||||||||||||||
Sbjct 1167 TCTGGGTAGATCTTATACA-AAACCAACTGCTGAGGGCTATTGATCGGGAGAAAATATGG 1225
Query 1187 TCAA-AGTTAACAACATCCGAAAGTATAGAGGTTTTGGAGAGAGATTTAGCAATTTTTGG 1245
|||| | |||| ||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1226 TCAAGA-TTAATAACGTCTGAAAGTATAGAGGTTTTGGATAGAGATTTAGCTATTTTTGG 1284
Query 1246 ATTCTTCATTGCTTTGGGCAGGAGCACACAGTCCATTTTAGCTGCAAATGGTTTT-GATT 1304
|||||||||||| ||||||| |||||| ||||| ||||||||||||||||||| | ||
Sbjct 1285 ATTCTTCATTGCCTTGGGCAAGAGCACCCAGTCTTTTTTAGCTGCAAATGGTTTCAG-TT 1343
Query 1305 CTCTGGAGAATCCTTTGGAAGACCTTGTTAGGCATCTT-ATTGGGGGCAG-CGTCCTGTA 1362
| |||||||||||| ||||||||||||||||||| ||| |||||||| || | |||| |
Sbjct 1344 CGCTGGAGAATCCTGTGGAAGACCTTGTTAGGCA-CTTCATTGGGGGAAGTC-TCCTACA 1401
Query 1363 CTATCCTCAACTTTCATCCATCAGTTCATACCAGCTGTATGTAGAGGTTGTTTGCGAAGA 1422
|||||||| |||||| |||||||||| |||||| |||||||||||||||| || |||||
Sbjct 1402 ATATCCTCAGCTTTCAGCCATCAGTTCTTACCAGTTGTATGTAGAGGTTGTCTGTGAAGA 1461
Query 1423 ACTAGAATGGATTCCTTTCTATCCAGACA-ATACTGG-CACACAGCCT-CCAAAACAATC 1479
|||||| ||||||||||||||||||| || | | || | | ||||| || || |||||
Sbjct 1462 ACTAGATTGGATTCCTTTCTATCCAGCCAGAAA--GGACTCCCAGCCAGCCGAA-CAATC 1518
Query 1480 ACATGGGCATAAGAGCAAAACAGAAGGACCACCTAATTATGAAGTTATTCCCCA-ACTGT 1538
||| |||||||| |||| | || |||| |||||||||||||| | | |||| || | | |
Sbjct 1519 ACACGGGCATAAAAGCAGACCACAAGGGCCACCTAATTATGATGCTCTTCCACAGA-TAT 1577
Query 1539 TGGATGTTTGCTCTTATTGGCTACAGAGTTTTATTAAATATAGTAAATGGCCAGAGAATC 1598
|| ||||||||||||||||||||||||| |||||||| || || |||||||| |||||||
Sbjct 1578 TGAATGTTTGCTCTTATTGGCTACAGAGCTTTATTAAGTACAGCAAATGGCCTGAGAATC 1637
Query 1599 CATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1635
| |||||||||||||||||||||||||||||||||||
Sbjct 1638 CTTCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGG 1674
> AT3G11570.1 | Symbols: TBL8 | TRICHOME BIREFRINGENCE-LIKE 8 |
chr3:3645022-3647542 REVERSE LENGTH=1905
Length=1905
Score = 298 bits (161), Expect = 2e-79
Identities = 175/182 (96%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 2730 TTGTACCTCTATTCATTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCGTAGAGAATCCC 2789
||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1510 TTGAACCTCTATTCACTTTGTTCGGTAATTCATTGCCAAAAGCTGCGCATAGAGAATCTC 1451
Query 2790 GTTCCATGTGTCAGGTACACCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATCTTC 2849
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GTTCCATGTGTCCGGTACTCCGGGTAAGCACCAGTGACTGCAGTCTTGAGGAGCATCTTC 1391
Query 2850 AGGAGTTCCCGGTTCTCGATACCGTGAAGGATGAGCATCTTTCCTGAACTCGGTCAGATA 2909
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1390 AGGAGTTCCCGGTTCTCGATACCGCGAAGGATGAGCATCTTTCCTGAACTCGGTCAGATA 1331
Query 2910 TG 2911
||
Sbjct 1330 TG 1329
Score = 180 bits (97), Expect = 9e-44
Identities = 104/107 (97%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 3078 CCTGTAGTGTACAGGAGAGAAGCTTCTGAAGAAGACATAACTCCTCTCAGAATCTAGTCT 3137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1171 CCTGTAGTGTACAGGAGAGAAGCTTCTGAAGAAGACATGACTCCTCTCAGAATCTAGTCT 1112
Query 3138 CTCTAAAACCCATGACTTCCATGTCTTTAAAGACTT-TCCAAATCCC 3183
|||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1111 CTCTAAAACCCATGACTTCCATGTCTTTAAAGACTTCTC-AAATCCC 1066
Score = 141 bits (76), Expect = 4e-32
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 2906 GATATGATCAGGTTCCATTTTCTTCATATCAGTCTCTGGCTCTGTCTCTGCATCACACAA 2965
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1255 GATAGGGTCAGGTTCCATTTTCTTCATATCAGTCTCTGGCTCTGTATCTGCATCACACAA 1196
Query 2966 ACCACCCAAGTTCCATGTCCCGTTCCTG 2993
||||||||||||||||||||| ||||||
Sbjct 1195 ACCACCCAAGTTCCATGTCCCATTCCTG 1168
Score = 97.1 bits (52), Expect = 9e-19
Identities = 59/62 (95%), Gaps = 2/62 (3%)
Strand=Plus/Minus
Query 2530 GGTTACAGCGGTTGGTCACGCAGCCATGCTGGCTGGAATTCAGAGATATGTACCCAG-CC 2588
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1681 GGTTACAGCGGTTGGTCACGCTGCCATGCTGGCTGGAATTCAGAGATATGTACC-AGGCC 1623
Query 2589 TG 2590
||
Sbjct 1622 TG 1621
> AT1G64563.1 | Symbols: | other RNA | chr1:23975085-23978335
REVERSE LENGTH=2921
Length=2921
Score = 89.8 bits (48), Expect = 2e-16
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1589 CCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGGG 1636
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2777 CCAGAGAATCCATCTAATGTCAAGGCAGCAAAATTCTTATCCAAGGGG 2824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158326872108
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5