BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478504
Length=2219
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11590.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 3624 0.0
AT3G11591.1 | Symbols: | unknown protein; Has 30201 Blast hits... 309 7e-83
> AT3G11590.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits
to 15179 proteins in 1213 species: Archae - 372; Bacteria
- 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses
- 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660377-3663734
FORWARD LENGTH=2218
Length=2218
Score = 3624 bits (1962), Expect = 0.0
Identities = 2143/2228 (96%), Gaps = 21/2228 (1%)
Strand=Plus/Plus
Query 1 TCTGATCAAAATACCTCAAAACACAGCAACCGCCATTTCTTTCCAAATTCCCCCAATTCT 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTGATCAAAAAACCTCAAAACACAGCAACCGCCATTTCTTTCCAAATTCCCCCAATTC- 61
Query 61 CTTCACTTTTCTCAA-TCCAACTT-T-ATCCT-CAAGAAGAAGCCATAGAAATGCTTTAA 116
| || ||| ||| | | ||| | | | |||||||||||||||||||||||| |
Sbjct 62 C--CA---TTC-CAACTTTATCTTCTGA-AGTAGAAGAAGAAGCCATAGAAATGCTTTGA 114
Query 117 AGTTTCTGTAAAGAGATCTACCTACGATAGTTTTGAATATGCCGAGGGAGAATCAAAGCG 176
|||||||||||||||| | |||| || |||||||||||||||||| ||||||||||||
Sbjct 115 AGTTTCTGTAAAGAGAAAGATCTACAATTGTTTTGAATATGCCGAGGCAGAATCAAAGCG 174
Query 177 TAGAGAATCTACTTCTACTTGGCAAAATCAGGAAACGTGGATGTTCTTCGCCGACATCGT 236
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 175 TAGAGAATCTACTTCTACTTGGCAAAATCAGGAAACGTGGTTGTTCTTCGCCGACATCGT 234
Query 237 CGACTTCTTCGATTCTCCGTGAAGGTTATAGATTCAAAAGAGCGATTGTTGTTGGTAAAA 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 CGACTTCTTCGATTCTCCGTGAAGGTTATAGATTCAAAAGAGCGATAGTTGTTGGTAAAA 294
Query 297 GAGGAGGATCCACTACTCCTGTACCTACATGGAGACTTATGGGCCGATCTCCTTCTCCAC 356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 295 GAGGAGGATCCACTACTCCTGTACCTACATGGAGACTTATGGGTCGATCTCCTTCTCCAC 354
Query 357 GAGCTTCCGGTGCTTTACACGCTGC-G--TCTCCGTCGTCGCACTGCGGGAGCAAAACCG 413
||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 355 GAGCTTCCGGTGCTTTACACGCTGCTGCTTCTCCGTCGTCTCACTGCGGGAGCAAAACCG 414
Query 414 GTAAAGTATCAGCTCCTGCTCCGGTTTCAGCTAGGAAGTTAGCGGCGACGCTTTGGGAGA 473
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 415 GTAAAGTATCAGCTCCTGCTCCTGTTTCAGCTAGGAAGTTAGCTGCGACGCTTTGGGAGA 474
Query 474 TGAACGAGATGCCTTCACCTAGAGTGGTGGAGGCGGCGGTGCCAATGATTAGAAAGAGTA 533
||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 475 TGAACGAGATGCCTTCACCTAGAGTTGTGGAGGAGGCTGCGCCAATGATTAGAAAGAGTA 534
Query 534 GAAAGGAGAGAATCGCGCCGCTTCCTCCGCCGAGATCATCGGTTCATTCTGGTTCTCTAC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAAGGAGAGAATCGCGCCGCTTCCTCCGCCGAGATCATCGGTTCATTCTGGTTCTCTAC 594
Query 594 CGCCTCATCTTTCTGATCCGTCGCATAGTCCAGTCTCTGAGAGGATGGAAAGATCAGGGA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CGCCTCATCTTTCTGATCCGTCGCATAGTCCAGTCTCTGAGAGGATGGAAAGATCAGGGA 654
Query 654 CTGGGAGTCGCCAGAGAAGAGCATCATCAACTGTGCAGAAGCTTAGGCTTGGAGACTGCA 713
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 655 CTGGGAGTCGCCAGAGAAGAGCTTCATCAACTGTGCAAAAGCTTAGGCTTGGAGACTGCA 714
Query 714 ATGTGGGGGCTAGGGATCCTATTAGCAATGGCAGCTTCATGGATATTGAGACTCGATCAC 773
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 715 ATGTGGGGGCTAGGGATCCTATTAACAGTGGCAGCTTCATGGATATTGAGACTCGATCAC 774
Query 774 GGGTGGAGACACCGACTGGGTCAACTGTGGGTGTCAAAACACGGTTGAAGGATTGTAGTA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGGTGGAGACACCGACTGGGTCAACTGTGGGTGTCAAAACACGGTTGAAGGATTGTAGTA 834
Query 834 ACGCTCTCACAACATCAAAAGAGCTTCTCAAAATCATTAATAGAATGTGGGGTCAAGACG 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 835 ACGCTCTCACAACATCAAAAGAGCTTCTCAAAATCATTAACAGAATGTGGGGTCAAGACG 894
Query 894 ATCGCCCATCTTCTAGCATGTCCCTCGTCTCTGCTTTACATTCTGAGCTCGAAAGAGCTC 953
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACCGCCCATCTTCTAGCATGTCCCTCGTCTCTGCTTTACATTCTGAGCTCGAAAGAGCTC 954
Query 954 GCTTACAGGTCAATCAGTTAATCCACGAACATAAACCGGAAAACAACGACATTAGCTACT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GCTTACAGGTCAATCAGTTAATCCACGAACATAAACCGGAAAACAACGACATTAGCTACT 1014
Query 1014 TGATGAAGCGTTTTGCCGAAGAGAAAGCAGCGTGGAAAAGCAACGAGCAAGAAGTCGTTG 1073
|||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 1015 TGATGAAGCGTTTTGCCGAAGAGAAAGCTGTGTGGAAAAGCAACGAGCAAGAAGTTGTTG 1074
Query 1074 AGGCTGCAATCGAATCTGTTGCTGGTGAGCTAGAAGTGGAGAGGAAGTTGAGGAGACGGT 1133
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 AGGCTGCAATCGAATCTGTTGCTGGTGAGCTAGAAGTGGAGAGGAAGCTGAGGAGACGGT 1134
Query 1134 TTGAGAGCTTGAACAAGAAATTGGGCAAAGAATTGGCTGAAACAAAATCAGCTCTGATGA 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTGAGAGCTTGAACAAGAAATTGGGCAAAGAATTGGCTGAAACAAAATCAGCTCTGATGA 1194
Query 1194 AAGCAGTGAAAGAAATCGAGAACGAGAAGCGAGCGAGAGTGATGGTCGAGAAAGTTTGTG 1253
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1195 AAGCAGTTAAAGAAATCGAGAACGAGAAGCGAGCGAGAGTGATGGTTGAGAAAGTTTGTG 1254
Query 1254 ATGAACTAGCAAGAGACATAAGCGAAGACAAAGCCgaagttgaagaactgaagagagaat 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ATGAACTAGCAAGAGACATAAGCGAAGACAAAGCCGAAGTTGAAGAACTGAAGAGAGAAT 1314
Query 1314 cttttaaagtcaaagaagaagtggaaaaggaaagagagaTGTTGCAGTTAGCAGATGCAT 1373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTTTTAAAGTCAAAGAAGAAGTCGAAAAGGAAAGAGAGATGTTGCAGTTAGCAGATGCAT 1374
Query 1374 TGCGCGAAGAGAGAGTACAGATGAAACTCTCGGAGGCTAAACACCAGCTCGAGGAGAAAA 1433
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1375 TGCGGGAAGAGAGAGTACAGATGAAACTATCGGAGGCTAAACACCAGCTCGAGGAGAAAA 1434
Query 1434 ACGCAGCTGTTGATAAGCTAAGGAACCAGCTTCAAACTTACCTCAAAGCAAAAAGATGTA 1493
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1435 ACGCAGCTGTTGATAAGCTAAGAAACCAGCTTCAAACTTACCTCAAAGCAAAAAGATGTA 1494
Query 1494 AAGAGAAGACCCGTGAACCGCCTCAAACTCAGCTACATAACGAAGAGACTGGAGATTATT 1553
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1495 AAGAGAAGACCCGTGAACCACCTCAAACTCAGCTACATAACGAAGAGGCTGGAGATTATT 1554
Query 1554 TAAACCATCACATCAGTTTTGGATCATATAACATCGAAGATGGAGAAGTAGAGAATGGAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1555 TAAACCATCACATCAGTTTTGGATCATATAACATCGAAGATGGAGAAGTCGAGAATGGAA 1614
Query 1614 ATGAAG-AGGATTCAGGCGAAAGCGACCTTCATTCCATAGAACTGAACATAGACAACAAG 1672
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 ATGAAGAAGG-TTCAGGCGAAAGCGACCTTCATTCCATAGAACTGAACATAGACAACAAG 1673
Query 1673 AGCTATAAATGGCCTTATGGTGAAGAGAACAGAGGAAGAAAATCAACGCCAAGGAAAAGC 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AGCTATAAATGGCCTTATGGTGAAGAGAACAGAGGAAGAAAATCAACGCCAAGGAAAAGC 1733
Query 1733 CTTTCTTTACAAAGAAGCATATCGGATTGTGTTGATTGGGTTGTACAGAGCGAGAAGCTT 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CTTTCTTTACAAAGAAGCATATCGGATTGTGTTGATTGGGTTGTACAGAGCGAGAAGCTT 1793
Query 1793 CAAAAAAGTGGAGATGGAGGATTGGATTGGGGAAGATCAATTGAGGTTGAGCCAAAAGGT 1852
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 1794 CAAAAAAGTGGAGATGGAGGGTTGGATTGGGGAAGATCTATTGACGTTGAGCCTAAAGGG 1853
Query 1853 TATTTAGATGAAACACAAGCTTATAAACCAAACAAGGCTTCTTCAAAAGATCACCATCTC 1912
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1854 TATATAGATGAAACACAAGCTTATAAACCAAACAAGGCTTCTTCAAAAGATCACCATATC 1913
Query 1913 GTCTCGGGTTCGAGACTAAGTAACTTCCGCGGTGGATCCGTGTCAAAGTCGCGGTTATCT 1972
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1914 CTCTCGGGTTCGAGACTAAGTAACTTCCGCGGTGGATCTGTTTCAAAGTCGCGGTTATCG 1973
Query 1973 GATGCCTCGAAAGGCGAAAACCAGAATGCTAGAAAATCAAGATGGTAATATTGATCCGGA 2032
||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 1974 GATGCTTCGAAAGGCGAGAACCAGAATGCCAGAAAATCAAGATGGTAATAT-GATCAAGA 2032
Query 2033 AATTTTATTCACATTTTTCAGCGCAGAGATAACAGAATCTAAAGACATTTACATCTACAT 2092
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2033 AATTTTATTCACATTTT-CAGCGCAGAGATAACAGAATCTAAAGAC-TTTACATCTACAT 2090
Query 2093 TTTT-CTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAAAC 2151
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TTTTTCTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAAAC 2150
Query 2152 ATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCAAGAATTTACACGAAATTATCT 2211
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 2151 ATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCATGAATTTACACGAAATCGTCT 2210
Query 2212 TTCGATTT 2219
|| |||||
Sbjct 2211 TTTGATTT 2218
> AT3G11591.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:3663544-3663986
REVERSE LENGTH=443
Length=443
Score = 309 bits (167), Expect = 7e-83
Identities = 183/190 (96%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 2031 GAAATTTTATTCACATTTTTCAGCGCAGAGATAACAGAATCTAAAGACATTTACATCTAC 2090
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 440 GAAATTTTATTCACA-TTTTCAGCGCAGAGATAACAGAATCTAAAGAC-TTTACATCTAC 383
Query 2091 A-TTTTTCTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAA 2149
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 ATTTTTTCTCTGTTCGCTCGTTTTGTCAAGAGTGATTCTCTCATCTGTAAGTGACATAAA 323
Query 2150 ACATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCAAGAATTTACACGAAATTAT 2209
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 322 ACATGAATTTGAACTGGTAATGATCCAAACATGTAAGAGCATGAATTTACACGAAATCGT 263
Query 2210 CTTTCGATTT 2219
|||| |||||
Sbjct 262 CTTTTGATTT 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110089795185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5