BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478506 Length=721 Score E Sequences producing significant alignments: (Bits) Value AT3G11600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1094 0.0 AT5G06270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 159 3e-38 > AT3G11600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3667229-3667979 FORWARD LENGTH=751 Length=751 Score = 1094 bits (592), Expect = 0.0 Identities = 695/741 (94%), Gaps = 22/741 (3%) Strand=Plus/Plus Query 1 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC 61 Query 61 CAAAACCTCTTTCTCAAT-CCACAT--agag--aga-a-agagagagaTGAGCCGGAGGA 113 |||||||||||||||||| |||||| |||| ||| | ||||||||||||| ||||||| Sbjct 62 CAAAACCTCTTTCTCAATCCCACATAGAGAGAAAGAGAGAGAGAGAGATGAGTCGGAGGA 121 Query 114 ACAAGAACGGCTCTAAGCTCGAGCTGAGGCTAAACCTTTCGCCGCCTCCTTCTCAAGCCA 173 ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 122 ACAAGAACGGCCCTAAGCTCGAGCTGAGGCTGAATCTTTCGCCGCCTCCTTCTCAAGCCA 181 Query 174 GCCAGATGAGTCTTGTTCGATCTCCAAACCGATCCAACACGACTTCACCGACCTCATGCG 233 |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| Sbjct 182 GCCAGATGAGTCTTGTTCGATCACCAAACCGATCCAACACGACTTCACCAAGCTCATGCG 241 Query 234 TTTCTTCTGAAACGAACCAGGAGGAGAACGAGGCAATAACCTCAATGGTTCTTGTCGGTT 293 |||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 242 TTTCATCTGAAACTAACCAGGAGGAGAACGAGACAATAACCTCAATGGTTCTTGTGGGTT 301 Query 294 GCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGATGACCCTAAATGTCCTAAATGCA 353 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 302 GCCCTCGTTGCCTTATGTACGTTATGCTTTCTGATGATGACCCTAAATGTCCTAAATGCA 361 Query 354 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG 421 Query 414 CTGCCAACACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 473 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 422 CTGCCAATACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC 481 Query 474 GCAtttttttt-t-GT---ATGTAATCGAGGGATCT------T-AAACCGAAATCTAAAC 521 || |||||||| | || ||||||||||||||||| | |||||||||||||||| Sbjct 482 GCGTTTTTTTTGTTGTTGTATGTAATCGAGGGATCTCAAAAGTCAAACCGAAATCTAAAC 541 Query 522 TAATCCAACCGTActtttt-tggtttctcctttgatttttctctttagttgttttgtctt 580 ||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| Sbjct 542 TAATCCAACCGTA-TTTTTCTGGTTTCTCCTTTTATTTATCTCTTTAGTTGTTTTGTCTT 600 Query 581 tAGAGTAGTGCTAATCACGCTCCACTTTTAGACTAAACTTGAAGTGGAGCGCCACTAGCA 640 ||||||||||||||||||||||||||||||||| | ||| |||||| ||||| ||||||| Sbjct 601 TAGAGTAGTGCTAATCACGCTCCACTTTTAGACCAGACTCGAAGTGTAGCGCGACTAGCA 660 Query 641 CTAACTTTGCTTAAAATGGAAGAATGATTAttttttttATAACTGGCGATGCTTAGTATG 700 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 661 CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTGTTATAACTGGTGATGCTTAGTATG 720 Query 701 AT-AAACATGTGTTGTTGTTT 720 | |||||||||||||||||| Sbjct 721 ACGAAACATGTGTTGTTGTTT 741 > AT5G06270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1912550-1913674 FORWARD LENGTH=1048 Length=1048 Score = 159 bits (86), Expect = 3e-38 Identities = 108/119 (91%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 272 ACCTCAATGGTTCTTGTCGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGAT 331 ||||| |||||||||||||| || |||||||| || |||||||||||||| || || || Sbjct 458 ACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCTCAGAAGAC 517 Query 332 GACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGC 390 ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 518 GACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATGAAAACGC 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34962966312 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5