BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478506

Length=721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1094    0.0  
  AT5G06270.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   159    3e-38


> AT3G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to karrikin; EXPRESSED 
IN: 21 plant structures; EXPRESSED DURING: 12 growth 
stages; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins 
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:3667229-3667979 FORWARD LENGTH=751
Length=751

 Score = 1094 bits (592),  Expect = 0.0
 Identities = 695/741 (94%), Gaps = 22/741 (3%)
 Strand=Plus/Plus

Query  1    TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    TGTTTGTTTTATAAAATGGCATAAGCATAACCAACAAGAAGACGACTTTCTCAATAAAAC  61

Query  61   CAAAACCTCTTTCTCAAT-CCACAT--agag--aga-a-agagagagaTGAGCCGGAGGA  113
            |||||||||||||||||| ||||||  ||||  ||| | ||||||||||||| |||||||
Sbjct  62   CAAAACCTCTTTCTCAATCCCACATAGAGAGAAAGAGAGAGAGAGAGATGAGTCGGAGGA  121

Query  114  ACAAGAACGGCTCTAAGCTCGAGCTGAGGCTAAACCTTTCGCCGCCTCCTTCTCAAGCCA  173
            ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  122  ACAAGAACGGCCCTAAGCTCGAGCTGAGGCTGAATCTTTCGCCGCCTCCTTCTCAAGCCA  181

Query  174  GCCAGATGAGTCTTGTTCGATCTCCAAACCGATCCAACACGACTTCACCGACCTCATGCG  233
            |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct  182  GCCAGATGAGTCTTGTTCGATCACCAAACCGATCCAACACGACTTCACCAAGCTCATGCG  241

Query  234  TTTCTTCTGAAACGAACCAGGAGGAGAACGAGGCAATAACCTCAATGGTTCTTGTCGGTT  293
            |||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  242  TTTCATCTGAAACTAACCAGGAGGAGAACGAGACAATAACCTCAATGGTTCTTGTGGGTT  301

Query  294  GCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGATGACCCTAAATGTCCTAAATGCA  353
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  302  GCCCTCGTTGCCTTATGTACGTTATGCTTTCTGATGATGACCCTAAATGTCCTAAATGCA  361

Query  354  AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  362  AAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGCTTTTGCCGCTACAACCGCTACCG  421

Query  414  CTGCCAACACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC  473
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  CTGCCAATACCAGACGCAAGAAGAAGACCTGGTGGAACTGAATTTATTAATGATCCAACC  481

Query  474  GCAtttttttt-t-GT---ATGTAATCGAGGGATCT------T-AAACCGAAATCTAAAC  521
            || |||||||| | ||   |||||||||||||||||      | ||||||||||||||||
Sbjct  482  GCGTTTTTTTTGTTGTTGTATGTAATCGAGGGATCTCAAAAGTCAAACCGAAATCTAAAC  541

Query  522  TAATCCAACCGTActtttt-tggtttctcctttgatttttctctttagttgttttgtctt  580
            ||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct  542  TAATCCAACCGTA-TTTTTCTGGTTTCTCCTTTTATTTATCTCTTTAGTTGTTTTGTCTT  600

Query  581  tAGAGTAGTGCTAATCACGCTCCACTTTTAGACTAAACTTGAAGTGGAGCGCCACTAGCA  640
            ||||||||||||||||||||||||||||||||| | ||| |||||| ||||| |||||||
Sbjct  601  TAGAGTAGTGCTAATCACGCTCCACTTTTAGACCAGACTCGAAGTGTAGCGCGACTAGCA  660

Query  641  CTAACTTTGCTTAAAATGGAAGAATGATTAttttttttATAACTGGCGATGCTTAGTATG  700
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct  661  CTAACTTTGCTTAAAATGGAAGAATGATTATTTTTGTTATAACTGGTGATGCTTAGTATG  720

Query  701  AT-AAACATGTGTTGTTGTTT  720
            |  ||||||||||||||||||
Sbjct  721  ACGAAACATGTGTTGTTGTTT  741


> AT5G06270.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G11600.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:1912550-1913674 FORWARD LENGTH=1048
Length=1048

 Score =  159 bits (86),  Expect = 3e-38
 Identities = 108/119 (91%), Gaps = 0/119 (0%)
 Strand=Plus/Plus

Query  272  ACCTCAATGGTTCTTGTCGGTTGCCCTCGTTGCCTTATGTACGTTATGCTTTCCGATGAT  331
            ||||| |||||||||||||| || |||||||| || |||||||||||||| || || || 
Sbjct  458  ACCTCGATGGTTCTTGTCGGATGTCCTCGTTGTCTCATGTACGTTATGCTCTCAGAAGAC  517

Query  332  GACCCTAAATGTCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCAAGAAAACGC  390
            ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  518  GACCCTAAATGCCCTAAATGCAAAAGCACCGTTCTTCTTGATTTCCTCCATGAAAACGC  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34962966312


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5