BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478514
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1397 0.0
> AT3G11690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G06380.1);
Has 84 Blast hits to 84 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3694988-3696478
FORWARD LENGTH=1491
Length=1491
Score = 1397 bits (756), Expect = 0.0
Identities = 928/1004 (92%), Gaps = 39/1004 (4%)
Strand=Plus/Plus
Query 286 ACAAAAACTATGAACACGACGTTACGTTACGATCCAAGACAGATCTCGAGGCAAACGAAA 345
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 488 ACAAAAACTATGAACACGACGTTACGTTACGATCCGAGACAGATCTCGAGGCAAACGAAA 547
Query 346 CCGTCTGATACTCCATCGTCTTCTCCGTCTCGTAGTCACCGGAGACAGCCTTTGCTTCAG 405
||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 548 CCGTCAGATACACCATCGTCTTCTCCGTCTCGTAGTAACCGGAGACAGCCTTTGCTTCAG 607
Query 406 AGAAGTCTCTCTTCTCCCTCACCAAGAGCTTCTTGCGGCGGATCTACTCCCGCCGAGTTT 465
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 608 AGAAGTCTCTCTTCTCCGTCACCACGAGCTTCTTGCGGCGGATCTACTCCCGCCGAGTTT 667
Query 466 TGTGGTGGTACGACGGCGAGTTGCGCCGCCGTTTGGTGTTGTTGTCCTTGCGGACTCGTT 525
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 668 TGCGGTGGTACGACGGCGAGTTGCGCCGCCGTGTGGTGTTGTTGTCCCTGCGGACTCGTT 727
Query 526 AACCTCCTCGTTCTCGCGATCTATAAAGTTCCTAAAGGAATCTGCCGTCGCGCTATCCGT 585
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 728 AACCTACTCGTTCTCGCGATCTACAAAGTTCCTAAAGGAATCTGCCGTCGCGCTATCAG- 786
Query 586 AA-TCGCCGCCGTAAACAACTCGTGAAGAACGGAATCCTTCCGCCGCTTCCGACGGACGG 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGTCGCCGCCGTAAACAACTCGTGAAGAACGGAATCCTTCCGCCGCTTCCGACGGACGG 846
Query 645 GAAAAACGAGCGGATGCAGAGAGTTTTTCAGAATTCTGAATTCGCGATTCATCCATTGGA 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 847 GAAAAACGAGCGGATGCAGAGAGTTTTTCAGAATTCTGAATTCGCGATTCATCCGTTGGA 906
Query 705 TAGCGACGATGTCTCGGACGATGAAGATGATGATAATTTCTTGGATCTGAAGTATATCGG 764
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 907 TAGCGACGATGTGTCTGACGACGAAGATGATGATAATTTCTTGGATCTGAAGTATATCGG 966
Query 765 AAAATCGGTAGCGGCGGCGGGGTTTACGACTGAGGAGGAGACTGATGAAGACGACGAGGC 824
||||||||||||| ||| || |||||||| |||||||||||||||||||| || |||||
Sbjct 967 AAAATCGGTAGCGACGG-GG--TTTACGACGGAGGAGGAGACTGATGAAGATGATGAGGC 1023
Query 825 GGTGTTAGCATTAGAGAAAGAGATGTGGAATAGATTTTACGGCGCTGGATTTTGGCGAAG 884
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1024 GGTGTTAGCATTAGAGAAAGAGATGTGGAATAGGTTTTACGGAGCTGGATTTTGGCGAAG 1083
Query 885 TCCGTCACAGAGAGAATCGGTTTCGTCTCCGAGAGTTTCCAAGTCTCTTTCGTCATCGCC 944
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TCCGTCACAGAGAGAATCAGTTTCGTCTCCGAGAGTTTCCAAGTCTCTTTCGTCATCGCC 1143
Query 945 GAGACCGTCGTTTACTGAAGTATACCGGAATAGGGACACAACGGTTAGAGGCGGAGGAG- 1003
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1144 GAGACAATCGTTTACTGAAGTATACCGGAATAGGGATACAACGGTTAGAGGAGGAGGAGG 1203
Query 1004 -----CTACGGTGGTGGCGGCCACACCAAGAGCCGTTAGGCATTTTGATTAGGGGAAAGA 1058
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1204 AGGAGCTACGGTGGTGGCGGCGACACCAAGAGCCGTTAGGCATTTTGATTAGGGTAAAGA 1263
Query 1059 GAGAGAGGCTTTATGAAAAATATATGTCTCAAAATGTCTTTTGTTAATAGTTTGATTCGT 1118
|||||| ||| |||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1264 AAGAGAG-CTT-ATGAAAAA-A-ATGTCTCAAAATGTCTTTTGTTAATAGTTTCATTCGT 1319
Query 1119 GTGGTGAG--T-GTT---------AGCTCAAAATGTGTGTCTCCGTTTGTCAAATCTTTG 1166
|||| ||| | ||| |||||||| ||||||||| |||||||||||||||||
Sbjct 1320 GTGGCGAGAGTTGTTGTGTGTGTGAGCTCAAAGTGTGTGTCTGCGTTTGTCAAATCTTTG 1379
Query 1167 GTGTGTGA-TTT-T------AT--T-TGG-ATTTTGTGATCATCAAATATGACCATTCGA 1214
|||||||| ||| | || | ||| |||||||||||||||||||||| ||||||
Sbjct 1380 GTGTGTGACTTTATTTGCCTATGGTATGGGATTTTGTGATCATCAAATATGAAAATTCGA 1439
Query 1215 ACTGGAATTGTGTTTTGTCGAAATGTGACATGACATGAGATCTT 1258
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AATGGAATTGTGTTTTGTCGAAATGTGACATGACATGAGATCTT 1483
Score = 172 bits (93), Expect = 6e-42
Identities = 134/153 (88%), Gaps = 5/153 (3%)
Strand=Plus/Plus
Query 135 CTCTTCTTCTCGCCGTCGCCATCACCGGAGATAA-TTCCGTGGTGCTGCGTTTGGCCTCA 193
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 301 CTC-TCTTCTCGCCGTCGCCATCACCGGAGATAAATTCCGTGGTGCTGCGTTTGGCCTTA 359
Query 194 AGGAAATTTGAGATCTCAATTGAAGAAAGAAACAGAGAGAAGACGAAGAACACAATTAAG 253
||||||||||||||||||||||||||||||| || ||||| ||||| | | | |||
Sbjct 360 CCAAAATTTGAGATCTCAATTGAAGAAAGAAACATAGCGAAGAAGAAGA-CG-A-TCAAG 416
Query 254 GAATTGAAATTTGATTCTCAtctctctctctcA 286
||||||||||| |||||| | ||||||| |||
Sbjct 417 GAATTGAAATTAGATTCTGTTATCTCTCTATCA 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5