BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478515
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11700.1 | Symbols: FLA18 | FASCICLIN-like arabinogalactan p... 2691 0.0
AT5G06390.1 | Symbols: FLA17 | FASCICLIN-like arabinogalactan p... 1114 0.0
> AT3G11700.1 | Symbols: FLA18 | FASCICLIN-like arabinogalactan
protein 18 precursor | chr3:3698839-3701493 FORWARD LENGTH=1970
Length=1970
Score = 2691 bits (1457), Expect = 0.0
Identities = 1795/1949 (92%), Gaps = 60/1949 (3%)
Strand=Plus/Plus
Query 1 AAAACTCACAtctatctctatctctcttctctgtctctcACTCCCCACTTTCCGAT---- 56
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AAAACTCACATCTATCTCTATCTCTCTTCTCTGTCTCTCACTCTCCACTTTCCGATCACC 60
Query 57 --C-A--C--C-AAACAGAG-AAAAAACATAGTAAA-------------CTTAATTCCTT 94
| | | | ||||| || |||||||| || ||| |||| || |||
Sbjct 61 GACGATTCAACAAAACATAGTAAAAAACAAAGCAAATTCTTTTTTTCTCCTTAGTTACTT 120
Query 95 CTTCTACAGATTATCTAAATCTTACAGAGCACCATGGATCGTTGTATCTATGGTTGCTCC 154
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCTACAGATTATCTCAATCTTACAGAGCACCATGGATCGTTGTATCTATGGTTGCTCC 180
Query 155 GTCATTACTA---TC-T-T-CTTCTTCTTCCTGATCAATGCATCTGCTCTCGAATCGGGT 208
|||||||||| || | | |||||||||||| |||||||||| ||| | |||||||||
Sbjct 181 GTCATTACTATCTTCTTCTCCTTCTTCTTCCTCCTCAATGCATCCGCTTTAGAATCGGGT 240
Query 209 CACCACAACATAACCGGGTCGGGTCAAATCAACTCAAACTCCGTCCTCGTTGCTCTCCTC 268
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 CACCACAACATAACTGGGTCGGGTCAAATAAACTCAAACTCCGTCCTCGTAGCTCTCCTC 300
Query 269 GACTCTCGTTACACTGAACTCGCCGAGCTCGTTGAGAAGGCTCTTCTTCTCCAAACCCTC 328
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GATTCTCGTTACACTGAACTCGCCGAGCTAGTTGAGAAGGCTCTTCTTCTCCAAACCCTC 360
Query 329 GAAGACGCCGTTGGTCGTCACAATATTACTATTTTTGCTCCTCGCAATGAAGCACTCGAG 388
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 361 GAAGACGCCGTTGGTCGTCACAATATTACTATTTTCGCCCCACGCAATGAAGCACTCGAG 420
Query 389 CGTGACCTTGACCCGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGTGACCTTGACCCGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTC 480
Query 449 CAAACGCTTCTCTTGTCTCACATTATCCCCAAACGAGTCGGTTCAAACCAATGGCCTGAG 508
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 CAAACGCTTCTCTTGTCTCACATTATCCCCAAACGAGTCGGGTCAAACCAATGGCCTGAG 540
Query 509 GATAATTCGGGTCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGT 568
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGAATTCGGGTCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGT 600
Query 569 AAACTCAAAGGAGCGAATGGAAAGAGATTGGTGAATTCCGCTGTAATTACCCGACCCGAT 628
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAACTCAAAGGAACAAATGGAAAGAGATTGGTGAATTCCGCTGTAATTACCCGACCCGAT 660
Query 629 GATTTGACCCGACCCGACGGGTTGATCCACGGAATCGAAAGGCTTTTAATCCCTCGCTCC 688
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 661 GATTTAACCCGACCCGACGGGTTGATCCACGGAATCGAACGGCTTTTAATCCCTCGTTCC 720
Query 689 GTTCAAGAAGATTTCAACCGTCGGAGAAATCTCCGATCAATCTCCGCGGTATTACCCGAA 748
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GTTCAAGAAGATTTCAACCGACGGAGAAATCTCCGATCAATCTCCGCCGTATTACCCGAA 780
Query 749 GGAGCTCCGGAAATCGATCCGAGAACCAACCGTCTCAAGAAATCCGCCACCGCCGCCTCA 808
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 781 GGAGCTCCGGAAATCGACCCGAGAACCAACCGTCTCAAGAAATCTGCCACCGCCGTCTCA 840
Query 809 GTACCCGCCGGATCTCCACCAGCGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCGTCG 868
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 841 GTACCCGCCGGATCTCCACCAGTGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCATCG 900
Query 869 CTAGCCCCGGCTCCGGCTCCGGGACCAGGAGGTGCGCACAAACACTTCAACGGGGATGCT 928
||||| |||||||||||||| ||||| |||||||| |||||||| |||||||| ||||||
Sbjct 901 CTAGCTCCGGCTCCGGCTCCAGGACCTGGAGGTGCACACAAACATTTCAACGGCGATGCT 960
Query 929 CAGGTCAAAGATTTCATCCACACATTGTTACATTACGGCGGATACAACGAAATGGCCGAT 988
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 961 CAGGTCAAAGATTTCATCCACACATTGTTACATTACGGTGGATACAACGAAATGGCGGAT 1020
Query 989 ATTCTTGTAAATCTGACGTCACTGGCGACAGAGATGGGTCGATTAGTGTCGGAAGGTTAC 1048
||||| || |||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 1021 ATTCTCGTGAATCTGACGTCACTTGCGACGGAGATGGGTCGATTGGTGTCAGAAGGTTAC 1080
Query 1049 GTCCTCACCGTGTTAGCTCCTAACGACGAAGCTATGGCGAAATTGACGACAGATCAGCTT 1108
|||||||||||||||||||| ||||| |||||||||| |||||| ||||| |||||||||
Sbjct 1081 GTCCTCACCGTGTTAGCTCCGAACGATGAAGCTATGGGGAAATTAACGACTGATCAGCTT 1140
Query 1109 AGCGAGCCCGGAGCTCCGGAGCAAATTATGTATTATCACATTATACCGGAGTATCAAACG 1168
||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||
Sbjct 1141 AGCGAGCCCGGAGCTCCGGAGCAAATTATGTATTACCACATTATTCCAGAGTATCAGACG 1200
Query 1169 GAGGAGAGTATGTATAATTCGGTTAGGAGATTTGGGAAGGTGAAGTATGAAACGCTGCGT 1228
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAGGAAAGCATGTATAATTCTGTTAGGAGATTTGGGAAGGTGAAGTATGAAACGCTGCGT 1260
Query 1229 TTTCCTCACAAGGTTGGGGCTAAAGAAGCCGATGGCTCGGTTAAGTTCGGTTCTGGTGAT 1288
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1261 TTTCCTCACAAGGTTGGGGCTAAAGAAGCTGATGGCTCGGTTAAATTCGGTTCTGGTGAC 1320
Query 1289 CGGTCGGCGTATCTCTTTGATCCGGATATTTACACCGACGGGCGAATTTCTGTTCAGGGG 1348
|||||||| ||| | ||||||||||||||||||||||| || || ||||| |||||||||
Sbjct 1321 CGGTCGGCTTATTTGTTTGATCCGGATATTTACACCGATGGTCGCATTTCGGTTCAGGGG 1380
Query 1349 ATTGATGGTGTTTTGTTCCCGGAGGAGAAGGAAGAAGAGACGGTTAAGAAAACGACCGGT 1408
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 ATTGATGGTGTTTTGTTCCCAGAGGAGAAGGAAGAAGAGACGGTTAAGAAACCGACCGGT 1440
Query 1409 CCGGTTAAGAAAGTTGTTCAGCCAAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGAATG 1468
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1441 CCGGTTAAGAAAGTTGTTCAGCCGAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGTATG 1500
Query 1469 CTTGGAGCTATTGGCAAGGACTCATATCTAAGTAGATGCTGATGGATTCACAAACCCGAA 1528
|||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1501 CTTGGAGCTATTGGGAAGGACTCATATCTAAGCAGATGCTGATGAATTCACAAACCTGAA 1560
Query 1529 GAGATTATTGTAGAAAAATCTCTCAAGTGTTAT-TGTAAAACACATACAAAAGGTTCTTT 1587
|||||||||| || ||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 1561 GAGATTATTGAAGGAAAATCTCTCAAGTGTTATCTGTAAA-CACACACAAAAGGTTCTTT 1619
Query 1588 GGAGAAGAATGAAAGATTTGGAGGAAGAGCaaaaaaaaa---------caa-a-a--aa- 1633
|||| |||||||||||||| || |||||||||||||||| ||| | | ||
Sbjct 1620 GGAGCAGAATGAAAGATTTAGAAGAAGAGCAAAAAAAAAAAAAAAAAACAAGAGAGTAAT 1679
Query 1634 -CATCAATGTCCAAAACTTCAAAAGCATATTCTTCAATGGAATATGAAAA-AGGGTTTGT 1691
|||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||
Sbjct 1680 ACATCAATGTCCAAAACTTCAAAAGAATATTCTTCAGTGGAATATGAGAATAGGGTTTGT 1739
Query 1692 TGGGtttttttttttCTTATATaaaaaa-aTATTTTTTGGGTGGGGTTTTGATTTTGGGG 1750
|| |||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 1740 TGAGTTTTTTT-------ATATAAAAAATATTTTTTTTGGGTGGGGTTTTGATTTTGGGG 1792
Query 1751 TTATAAATACTGTAATTAGATATATGAACTCATTTTTTCAATTGATTTGGTGTATGAAAA 1810
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1793 TTATAAATACTGTAATTAGATATAAGAACTCATTTTTTCAATTGATTTGGTGTATGAAAA 1852
Query 1811 ATGAATCATAAAGTGGGGAACAAAAGAAAAAGACTTGAGAACCCACCACCACTTTCTTTC 1870
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1853 ATGAATCAAAAAGTGGGGAGCAAAAGAAAAAGTCTTGAGAACCCACCACCACTTTCTTTC 1912
Query 1871 TTCTCTACTTGGCCCTTTATTTGTGAATG 1899
|||| |||||| ||||||||||||||||
Sbjct 1913 TTCT--ACTTGGTCCTTTATTTGTGAATG 1939
> AT5G06390.1 | Symbols: FLA17 | FASCICLIN-like arabinogalactan
protein 17 precursor | chr5:1952851-1955788 FORWARD LENGTH=2116
Length=2116
Score = 1114 bits (603), Expect = 0.0
Identities = 1087/1317 (83%), Gaps = 48/1317 (4%)
Strand=Plus/Plus
Query 222 CCGGGTCGGGTCAAATCAACTCAAACTCCGTCCTCGTTGCTCTCCTCGACTCTCGTTACA 281
||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||||||||
Sbjct 198 CCGGGTCGGGTCAGATCAACTCCAACTCTGTCCTCGTAGCTCTTCTTGACTCTCGTTACA 257
Query 282 CTGAACTCGCCGAGCTCGTTGAGAAGGCTCTTCTTCTCCAAACCCTCGAAGACGCCGTTG 341
|||| || || |||||||| ||||| |||||||| || || || || |||||||| ||||
Sbjct 258 CTGAGCTAGCTGAGCTCGTCGAGAAAGCTCTTCTCCTTCAGACACTTGAAGACGCTGTTG 317
Query 342 GTCGTCACAATATTACTATTTTTGCTCCTCGCAATGAAGCACTCGAGCGTGACCTTGACC 401
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 318 GTCGTCACAATATTACCATTTTTGCTCCTCGCAATGAAGCTCTTGAGCGTGACCTTGACC 377
Query 402 CGGATTTTAAACGGTTCTTGCTCCAACCAGGTAACCTCAAATCTCTCCAAACGCTTCTCT 461
| || || || |||||||||||| | |||||||| ||||||||||| ||||| || |||
Sbjct 378 CTGAGTTCAAGCGGTTCTTGCTCGAGCCAGGTAATCTCAAATCTCTGCAAACACTCCTCA 437
Query 462 TG-TCTCACATTATCCCCAAACGAGTCGGTTCAAACCAATGGCC-TGAGGATAATTCGGG 519
|| || |||||||| ||||| || ||||| || ||||||||||| | || | || |||||
Sbjct 438 TGTTC-CACATTATACCCAATCGGGTCGGGTCGAACCAATGGCCTTCAGAAGAA-TCGGG 495
Query 520 TCGGGTCAAACACGTCACGTTAGGGCATGACCAAGTGCTGCATTTGAGTAAACTCAAAGG 579
||||||||| ||| |||| ||||| | || | || | | | |||||| ||| ||
Sbjct 496 TCGGGTCAAGCACCACACGCTAGGGAACGATC-AG-G-TCCGTTTGAG------CAACGG 546
Query 580 AGCGAATGG-AAAGAGATTGG-TGAATTCCGCTGTA-ATTACCCGACCCGATGATTTGAC 636
| | || || ||| ||| ||| || ||| |||| | |||| ||||||||||||||||||
Sbjct 547 A-C-AA-GGAAAAAAGA-TGGTTG-ATTTAGCTG-AGATTATCCGACCCGATGATTTGAC 600
Query 637 CCGACCCGACGGGTTGATCCACGGAATCGAAAGGCTTTTAATCCCTCGCTCCGTTCAAGA 696
|||||||||||| ||||||||||| || ||| ||||| | || |||||||| ||||||||
Sbjct 601 CCGACCCGACGGATTGATCCACGGGATTGAACGGCTTCTCATTCCTCGCTCTGTTCAAGA 660
Query 697 AGATTTCAACCGTCGGAGAAATCTCCGATCAATCTCCGCGGTATTACCCGAAGGAGCTCC 756
||||||||| || || | | || | |||||||||||| || ||||| |||||||||||
Sbjct 661 AGATTTCAATCGCCGTCGTAGCCTTCAATCAATCTCCGCCGTCTTACCTGAAGGAGCTCC 720
Query 757 GGAAATCGATCCGAGAACCAACCGTCTCAAGAAATCCGCCACCGCCGCCTCAGTACCCGC 816
||| | || |||||||||||||||||||||||| |||| | || || |||||||||
Sbjct 721 TGAAGTTGACCCGAGAACCAACCGTCTCAAGAAACCCGC-A--GCT-CC--AGTACCCGC 774
Query 817 CGGATCTCCACCAGCGCTTCCGATTGAATCCGCTATGGCTCCAGGTCCGTCGCTAGCCCC 876
||||||||||||||| |||||||| ||||||||||||| || |||||||||||||| ||
Sbjct 775 CGGATCTCCACCAGCTCTTCCGATCCAATCCGCTATGGCCCCTGGTCCGTCGCTAGCTCC 834
Query 877 GGCTCCGGCTCCGGGACCAGGAGGTGCGCA-CAAACACTTCAACGGGGATGCTCAGGTCA 935
||| || ||||||||||| ||||| ||| || |||||| |||| || ||||| ||||
Sbjct 835 GGCACCAGCTCCGGGACCTGGAGGCAAGCAGCAC-CACTTCGACGGTGAGGCTCAAGTCA 893
Query 936 AAGATTTCATCCACACATTGTTACATTACGGCGGATACAACGAAATGGCCGATATTCTTG 995
||||||||||||| ||| |||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 894 AAGATTTCATCCATACACTGTTACATTACGGCGGTTACAACGAGATGGCAGATATTCTCG 953
Query 996 TAAATCTGACGTCACTGGCGACAGAGATGGGTCGATTAGTGTCGGAAGGTTACGTCCTCA 1055
| |||||||||||||| |||||||||||||| || || ||||| ||||| || || | |
Sbjct 954 TGAATCTGACGTCACTCGCGACAGAGATGGGACGGTTGGTGTCAGAAGGCTATGTGTTAA 1013
Query 1056 CCGTGTTAGCTCCTAACGACGAAGCTATGGCGAAATTGACGACAGATCAGCTTAGCGAGC 1115
| || || ||||||||||| ||||| |||||||||||||| || |||||||| || ||||
Sbjct 1014 CGGTTTTGGCTCCTAACGATGAAGCAATGGCGAAATTGACCACGGATCAGCTGAGTGAGC 1073
Query 1116 CCGGAGCTCCGGAGCAAATTATGTATTATCACATTATACCGGAGTATCAAACGGAGGAGA 1175
| ||||| |||||||| || | || || || || || || |||||||||||||||||||
Sbjct 1074 CAGGAGCACCGGAGCAGATCGTATACTACCATATAATCCCTGAGTATCAAACGGAGGAGA 1133
Query 1176 GTATGTATAATTCGGTTAGGAGATTTGGGAAGGTGAAGTAT-GAAACGCTGCGTTTTCCT 1234
||||||| ||||| ||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 1134 GTATGTACAATTCTGTTAGGAGATTTGGGAAGGTGAAGT-TCGATACGTTGCGTTTTCCT 1192
Query 1235 CACAAGGTTGGGGCTAAAGAAGCCGATGGCTCGGTTAAGTTCGGTT-CTGGTGATCGGTC 1293
|| ||||||| |||||| ||||| ||||| || |||||||| ||| | ||||| |||
Sbjct 1193 CATAAGGTTGCGGCTAAGGAAGCTGATGGTTCCGTTAAGTTTGGTGAC-GGTGAGAAGTC 1251
Query 1294 GGCGTATCTCTTTGATCCGGATATTTACACCGACGGGCGAATTTCTGTTCAGGGGATTGA 1353
||||||| | |||||||| ||||| || || ||||| || ||||| ||||||||||||||
Sbjct 1252 GGCGTATTTGTTTGATCCTGATATCTATACGGACGGTCGGATTTCGGTTCAGGGGATTGA 1311
Query 1354 TGGTGTTTTGTT-CC-CG-GAGGAGAAGGAAGAAGAGA-CGGTTAAGAAAACGACCGGTC 1409
||||||||||| || | |||||| ||| | || | ||||||||||| | | |||
Sbjct 1312 CGGTGTTTTGTTTCCACAAGAGGAGGAGGTTGTTGA-ATCGGTTAAGAAA-C--C-GGT- 1365
Query 1410 CGGTTAAGAAAGTTGTTCAGCCAAGAAGAGGGAAGTTGCTGGAAGTAGCATGTAGAATGC 1469
| |||||| |||||||||| ||||||||||| ||| |||||||||| ||||| ||||
Sbjct 1366 ---T-AAGAAAATTGTTCAGCCGAGAAGAGGGAAATTGTTGGAAGTAGCCTGTAGTATGC 1421
Query 1470 TTGGAGCTATTGGCAAGGACTCATATCTAAGTAGATGCTGATGGATTCACAAACCCG 1526
|||| ||| ||||||||||| | ||||| || | |||| | || |||| ||||||||
Sbjct 1422 TTGGTGCTTTTGGCAAGGACACTTATCTCAGCAAATGCCGGTGAATTCGCAAACCCG 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94025620785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5