BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478516
Length=2096
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3... 3118 0.0
> AT3G11710.1 | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702169-3705714
REVERSE LENGTH=2172
Length=2172
Score = 3118 bits (1688), Expect = 0.0
Identities = 1971/2106 (94%), Gaps = 26/2106 (1%)
Strand=Plus/Plus
Query 2 AAACTTGAAACAACAATCTGAGAAAAGAGCGTTTTATCTTGTTGATTTTGAAATCTCCTC 61
|||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||
Sbjct 38 AAACTTGAAACAACAATCTGAGCAAAGAGCGTTTTATCTTGTTGATTTTGGAA--T-CTC 94
Query 62 CAAAACGATGGAAGGTTCAGCTGATCAAACTACGAAAGCGTTATCTGAATTAGCCATGGA 121
|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CATTACGATGGAAGGTGCGGCTGATCAAACTACGAAAGCGTTATCTGAATTAGCCATGGA 154
Query 122 TTCTTCTACCACCTCGAATGCTGCTGAGTCTAGCGCTGGTGATGCAGCTGGACCTCGGAG 181
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 155 TTCTTCTACCACCTTGAATGCTGCTGAGTCTAGCGCTGGTGATGGAGCTGGACCTCGGAG 214
Query 182 TAAAAATGCTCagaagaaggaactgaaattgaagcagaaagagg-a-ag-agag--gaaa 236
|||||||||| ||||||||||| |||| ||||||||||||||| | || |||| ||||
Sbjct 215 TAAAAATGCTTTGAAGAAGGAACAGAAAATGAAGCAGAAAGAGGAAGAGAAGAGACGAAA 274
Query 237 cg-c-aag-g-aagaagagaaggCTAAACAAGCTCCGAAAGTAAGCTCCCAGAGCCAGAA 292
| | ||| | ||| || |||||||||||||| || |||| ||||| | ||||||
Sbjct 275 GGACGAAGAGAAAGCTGAAAAGGCTAAACAAGCACCTAAAGCAAGCT--C----CCAGAA 328
Query 293 GGCAGTGGCAGCAGATGATGAAGAGATGGATGCAACGCAATACCATGAGAACAGATTGAA 352
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 329 GGCAGTGGCAGCAGATGATGAAGAGATGGATGCAACGCAATACTATGAGAACAGATTGAA 388
Query 353 ATATCTTGCGGCTGAGAAGGCTAAAGGGGAGAATCCATACCCTCACAAGTTCTCTGTGTC 412
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 389 ATATCTTGCGGCTGAGAAGGCTAAAGGGGAGAATCCATATCCTCACAAGTTCGCTGTGTC 448
Query 413 AATGTCCATTCCTGAATACATTGAGAAGTATGGTAGTTTAAACAATGGAGATCATGTTGA 472
|||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 449 AATGTCGATTCCTAAATACATTGAGACGTATGGTAGTTTGAACAATGGAGATCATGTTGA 508
Query 473 AGACGCTAATGAATCTCTAGCTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCT 532
| ||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AAACGCTGAGGAGTCTTTAGCTGGGCGGATAATGAGCAAGCGATCTTCCTCTTCCAAGCT 568
Query 533 CTTCTTCTATGATCTACATGGTGATGATTTCAAGGTCCAAGTCATGGCTGATGCAAGTAA 592
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CTTCTTCTATGATCTACACGGTGATGATTTCAAGGTCCAAGTCATGGCTGATGCAAGTAA 628
Query 593 GTCAGGATTGGATGAAGCTGAGTTCTTAAAGCTCCATTCGAATGTC-AAGCGTGGTGATA 651
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 629 GTCAGGATTGGATGAAGCTGAGTTCTTAAAGCTCCATTCGAATG-CTAAGCGTGGTGATA 687
Query 652 TTGTTGGAGTCACTGGGTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCCC 711
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTGTTGGAGTCATTGGGTTTCCAGGAAAAACTAAGAGGGGAGAATTGAGTATCTTTCCCC 747
Query 712 GATCATTTATCCTTCTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGATAATGTTA 771
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GATCATTTATTCTTCTGTCCCATTGCCTCCACATGATGCCGAGAAAGGCTGATAATGTTA 807
Query 772 ATGCAAAGAAACCTGAAATCTGGGTTCCAGGTGAAACGAGAAATCCTGAAGCATATGTTC 831
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 808 ATGCAAAGAAACCTGAAATCTGGGTTCCAGGTCAAACGAGAAATCCTGAAGCATATGTTC 867
Query 832 TGAAAGATCAGGAATCAAGATATCGCCAGCGTTATCTTGATCTGATGTTGAACGTGGAGG 891
||||||| ||||||||||||||||| |||||| |||||||| |||| |||||||||||||
Sbjct 868 TGAAAGACCAGGAATCAAGATATCGTCAGCGTCATCTTGATATGATTTTGAACGTGGAGG 927
Query 892 TTCGTCAGATATTCAAGACCAGAGCTCATATCATCTCCTACATCCGCAGATTCCTCGACA 951
||||||||||||||| ||| |||||| | ||||||||||| ||||||||||||||||||
Sbjct 928 TTCGTCAGATATTCAGGACTAGAGCTAAAATCATCTCCTATGTCCGCAGATTCCTCGACA 987
Query 952 ACAAAAATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGTGCAGCTG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 988 ACAAAAATTTCTTGGAGGTCGAGACACCTATGATGAACATGATTGCTGGTGGAGCAGCTG 1047
Query 1012 CTCGACCATTTGTGACACATCACAATGATCTAGATATGAGGCTGTACATGCGTATCGCAC 1071
|| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1048 CTAGACCTTTTGTGACACATCACAATGATCTAGATATGAGGCTGTACATGCGAATCGCAC 1107
Query 1072 CTGAACTCTTTCTCAAGCAACTTATAGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAA 1131
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1108 CTGAACTCTATCTCAAGCAACTTATTGTTGGTGGCTTGGAACGTGTTTACGAGATAGGAA 1167
Query 1132 AGCAATTCAGAAACGAGGGTATTGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGT 1191
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1168 AGCAATTCAGAAACGAGGGTATAGACCTGACCCACAATCCGGAGTTCACCACTTGCGAGT 1227
Query 1192 TCTATATGGCCTTCGCAGACTACAATGACCTGAT-GAAGATGACTGAGGATATGTTGAGT 1250
|||||||||| || |||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 1228 TCTATATGGCTTTTGCAGACTACAATGACCTGATGGAA-ATGACTGAGGTTATGTTGAGT 1286
Query 1251 GGCATGGTCAAGGAGTTAACAGGTGGTTATAAAATCAAGTATCATGCTAATGGGTATGAT 1310
|||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1287 GGCATGGTTAAGGAATTAACAGGTGGTTATAAAATCAAGTATAATGCTAATGGGTATGAC 1346
Query 1311 AAGGATCCAATTGAAATCGACTTCAAGCCACCATTCAGGAGGATTGAGATGATAGGAGAG 1370
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1347 AAGGATCCAATTGAAATCGACTTTACTCCACCATTCAGGAGGATTGAGATGATAGGAGAG 1406
Query 1371 TTGGAGAAGGTGGCTAACCTCAATATACCAAAAGACTTGGCTAGCGAAGAAGCTAACAAG 1430
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TTAGAGAAGGTTGCTAAGCTCAATATACCAAAAGACTTGGCTAGCGAAGAAGCTAACAAG 1466
Query 1431 TATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCT 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TATCTGATTGATGCATGTGCGAGGTTTGATGTCAAATGCCCTCCTCCTCAGACAACAGCT 1526
Query 1491 CGTTTGTTGGATAAACTTGTTGGAGAGTTTCTGGAAGTGACATGTGTGAACCCAACTTTC 1550
||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1527 CGTCTGTTAGATAAACTTGTTGGAGAATTTCTGGAACCGACATGTGTGAACCCAACTTTC 1586
Query 1551 ATCATCAACCATCCTGAGATCATGAGTCCATTGGCAAAATGGCACAGATCGAACAATGTT 1610
||||||||||| || |||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 1587 ATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGA 1646
Query 1611 TTGACAGAGAGATTTGAGCTGTTCATCAACAAACATGAACTCTGCAACGCCTACACGGAG 1670
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1647 TTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAACTCTGCAATGCCTACACGGAG 1706
Query 1671 CTGAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAATCT 1730
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1707 CTAAACGATCCTGTGGTACAGCGCCAGCGTTTTGCTGATCAGCTCAAGGATCGACAGTCT 1766
Query 1731 GGAGATGATGAAGCGATGGCTTTAGATGAGACATTTTGTAGTGCTTTAGAATATGGGTTG 1790
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1767 GGAGACGATGAAGCGATGGCTTTAGATGAAACATTTTGTAATGCTTTAGAATATGGGTTG 1826
Query 1791 GCTCCAACAGGTGGTTGGGGATTGGGTATAGACAGACT-TGCTATGCTTTTCACTGACTC 1849
||||| |||||||| |||||||| || ||||||||||| | |||||||||| || |||||
Sbjct 1827 GCTCCTACAGGTGGCTGGGGATTAGGAATAGACAGACTCT-CTATGCTTTTGACCGACTC 1885
Query 1850 ACAGAACATCAAGGAGGTTATTCTCTTCCCGGCAATGAGGCCACCACAGGACGAGTCAGT 1909
|| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 1886 ACTGAACATCAAGGAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGC 1945
Query 1910 AGCCCCTAAAGCTCCTTTAACAGAAGAGAAGAAATAAGGAGAGTCTGCACAAGTTTTCAG 1969
|||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1946 AGCCGCTCAAGCTCCTTTAACAGAAGAGAAGAAATAAGGAG--TCTACACAAGTTTTCTG 2003
Query 1970 ACTAAGCTTAGTCAATTGGCTATTATGCACTCTGTTCTCAAGTTACTTGTAATTGCAGAC 2029
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 ACTAAGCTTAGTCAATTCGCTATTATGCACTCTGTTCTCAAGTTACTTGTAATTGCAGAC 2063
Query 2030 CATAATTTTCAAAAATTATTTACCAATTAGTTATGATCAAAAACCTTTGTAAGACTTTTT 2089
|||| |||||||||| | ||||||||| |||| |||||||||||||||||||||||||
Sbjct 2064 CATATTTTTCAAAAAAAAAATACCAATTAATTATTATCAAAAACCTTTGTAAGACTTTTT 2123
Query 2090 TGCAAT 2095
||||||
Sbjct 2124 TGCAAT 2129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103915128150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5