BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478517
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11720.3 | Symbols: | Polyketide cyclase/dehydrase and lipi... 2477 0.0
> AT3G11720.3 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:3705912-3708721 REVERSE
LENGTH=1870
Length=1870
Score = 2477 bits (1341), Expect = 0.0
Identities = 1628/1760 (93%), Gaps = 46/1760 (3%)
Strand=Plus/Plus
Query 154 GGTGTTCT-CTGATTCAATTGAGTATGGAGAAGAATCGAGAGGTTTCGGAGTACAGAGAG 212
|||| ||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 140 GGTG-TCTGCTGATTCAATTGAGTATGGAGAAGAAACGAGATGTTTCTGAGTACAGAGAG 198
Query 213 AGACTTAATGAGACCTTGTCGTCTCCTGAGCTCGTTAATGAGCAAACTCTTAAAACTCTA 272
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 199 AGACTTAATGAGACCTTGTCGTCTCCTGAGCTCATTAATGAGCAAACTCTTAAAACCCTA 258
Query 273 GTCAGAAAACAGCTCAATGAAGAGTGTAGTGTTGATATATTGGATCAAAGAGTAGCTGCT 332
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GTCAGAAAACAACTCAATGAAGAGTGTAGTGTTGATATATTGGATCAAAGAGTAGCTGCT 318
Query 333 TTATCCAGTACAATTGAGAAGCTTAGGAGTGTATCAACAAAGGATCACGACTCGTCTAAA 392
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 319 TTATCCAGTACAATTGAGAAGCTTAGGAGTGTATCAACAAAGGATCAAGACTTGTCTAAA 378
Query 393 TCAAACAACGAGGCATCTTATGGTGATTGGAAAGTGAAACATGATGATGAAGATTGTCGT 452
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 TCAAGCACCGAGGCATCTTATGGTGATTGGAAAGTGAAACATGATGATAAAGATTGTCGT 438
Query 453 GTTATGTACCGTGAAGGACTTAAAGGAAGTCCATTTCATACATTGCTAGTTGAAGGCTGC 512
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 439 GTTATGTACCGTGAAGGACTTAAAGGAAGTCCATTTCATACATTGCTCGTTGAAGGTTGC 498
Query 513 ATTGATGGGACTATTGAAGACTGTTTATGTGTATGCTGGGAATCATCATTGTATGAGAAA 572
| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 499 ACTGATGGGACTATCGAAGACTGTTTATGTGTATGCTGGGAATCATCATTCTATGAGAAA 558
Query 573 TGGTGGCCAAAGTTGACATTTCCGTCATTCAGAGTCTTAGAAGCTAAATGCTTGCAAAAT 632
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 559 TGGTGGCCAAAGTTGACATTTCCGTCATTCAGGGTCTTAGAAGCTAAATGCTTGCAAAAG 618
Query 633 TTTAGGATTGATGAACAGATATGTTTACTAAGGGTGAAAGCACCGTGGCCATTGACAGAC 692
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 619 TTTAGGATTGATGAACAGATATGTTTACTGAGGGTGAAAGCACCGTGGCCACTGACAGAC 678
Query 693 AGAGAAGCTATTCTGCAGTATTTCTTATTCGAATACTTTAAAGACGGTTTAGTCATCATC 752
||||||||| ||||||||| |||| ||||||||||||||||||| | |||||||||||||
Sbjct 679 AGAGAAGCTGTTCTGCAGTTTTTCGTATTCGAATACTTTAAAGATGATTTAGTCATCATC 738
Query 753 CTACTAAACTCGGTAAAAG---AGAGCGACGGTATAGCTGAAGTAGTGAATGCTGTGAGA 809
||||| |||||| | ||| |||||| | || |||||||||| | ||||| |||||
Sbjct 739 CTACTTAACTCGATCGAAGTGGAGAGCGGCAGTGTAGCTGAAGT-G--AATGCGGTGAGG 795
Query 810 ATTGACTTCGTAGGCGGAGTTGCGATACAAAAAGTGACTCCGGAGAGGAGTTACCTAAGA 869
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 796 ATTGACTTCGTAGGCGGAGTTGCGATACAAAAAGTGACTCCAGAGAAGAGTTACATAAGA 855
Query 870 TTTATAGCGGAAGTGGACATAAAGCTGGACTTGGTACCTCCATCTCTTATTAATTTTATG 929
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 856 TTTATAGCGGAAGTGGATATAAAGCTGGACTTGGTTCCTCCATCTCTTATTAATTTTATG 915
Query 930 TCTAGGCAGCTTCTTGGCAACGGTTTCAAACTTTTCAAGAAGACTATTGGTTCAGTGGCT 989
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 916 TCTAGGCAGCTTCTTGGTAACGGTTTCAAACTTTTCAAGAAGACTATTGGTTCGGTGGCT 975
Query 990 GAATCCGATGATTACAAGAGAGTTTTAGCTGATCCATTGTATACTCATATACATGAAGCT 1049
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 976 GAATCCGATGATTACAAGACAGTTTTAGCTGATCCATTGTATACTCATATACGTGAAGCT 1035
Query 1050 CTGTATTCTAGTGATAAAACTAATGAAATCTGCCAAGTAAATGAGCTTCATAGCCAACAA 1109
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CTGTATTCTAGTGATAAAACTGATGAAATCTGCCAAGTAAATGAGCTTCATAGCCAACAA 1095
Query 1110 GGAAGAGATTGTGAAGA-ACAAGAACCGCA-GTTGGAAGCTGATGACCCATATATGGCAA 1167
||||||||||||||||| | ||||||| || ||||||||||||||| |||| || ||
Sbjct 1096 GGAAGAGATTGTGAAGAGA-AAGAACC-CAAGTTGGAAGCTGATGATG-ATAT--GGAAA 1150
Query 1168 AAGAGAATGAGACTCGCCATTGCGAAAATGAATCTGTACCTAGCAAAAGAGATGTTCCTG 1227
|||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1151 AAGAGAATGAGACTCGAGACTGCGAGAATGAATCTGTACCTTGCAAAAGAGATGTTCCTG 1210
Query 1228 AGATCGAGGAAGAAGAATGTGCTGATC-TG-AAAG-AAGAAGAA-AAAAGttctctttct 1283
||||||||||||||||||||| |||| | |||| ||||| || |||||||||| ||||
Sbjct 1211 AGATCGAGGAAGAAGAATGTGTTGATGATTTAAAGGAAGAA-AACAAAAGTTCTCCTTCT 1269
Query 1284 tctttttcttcttcttcttcttcAGAGGAGGATGAAAACAAGAAAGTCAAAACACGTTTC 1343
|||| |||||||||||||||||| ||||||||| ||||||| | |||||||||||||
Sbjct 1270 TCTTCTTCTTCTTCTTCTTCTTCTTCTGAGGATGAAGACAAGAATGGCAAAACACGTTTC 1329
Query 1344 TGCATAAGTCCAGAGGTGAAGCAAGCTTTAGGGACATTAGAGAGAGTAATATCAATGGTT 1403
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGCATAAGTCCGGAGGTGAAGCAAGCTTTAGGGACATTAGAGAGAGTAATATCAATGGTT 1389
Query 1404 AGAAAATCCAAAACAGATAATAATAATACATCAACCTCTTCCGGTgaagaagaagaagaa 1463
||||||||||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 1390 AGAAAATCCAAAACAGATAATAATAATACATCAACCTCTTC-GG--A-G--GAAGAAGAA 1443
Query 1464 gaagaagaagCATCATCATCACAAATGCATCATTCAGGGAGCACACAGACTGTTTCTAAT 1523
||||||| | ||||||| || ||| |||| |||||||||||||| |||| |||||||| |
Sbjct 1444 GAAGAAGCATCATCATC-TC-CAA-TGCAGCATTCAGGGAGCACTCAGATTGTTTCTAGT 1500
Query 1524 AGCAAAGTTTGTATTCAAGATCCTAAAACTGAACTTCTTGATGAAGCATCCTTCGCACAT 1583
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1501 AGCAAAGTTTGTATTCAAGATCCTAACACTGAACTTCTCGATGAAGCATCCTTTGCACAT 1560
Query 1584 TATCACAACAACAACAGCAACAAAATAGCTCCTGCATCACCCGATATCGATCTAACAACA 1643
|||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1561 TATCACAACA------GCAACAAAATAGCTCCTGCATCACCCGAGATCGATCTTACAACA 1614
Query 1644 AACTCTGAGGTAACAAGAATAACAGTCTCACAAGCCACAACTCTTTTCAGCCAAACAACA 1703
||||||||||||||||| ||||||||||| ||||| |||| ||||||| |||||||||||
Sbjct 1615 AACTCTGAGGTAACAAGGATAACAGTCTCGCAAGCAACAAATCTTTTCTGCCAAACAACA 1674
Query 1704 GAGAATAGTGACGACAA--AC---C-GAGTGGTTTAAACGGAGGTAAGAGCTCAAATCTG 1757
||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 1675 GAGAATAGTGACGACAATTACAAACCGAGCGGTTTAAACGGAGGTAAGAGCTCAAATCTG 1734
Query 1758 CAGAGGAAACGTAACCCGAGCTGCTTTGGTTTCAGGTTTTGGAGAAGAAGGACTTGAAAT 1817
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CAGAGGAAACGTAAACCGAGCTGCTTTGGTTTCAGGTTTTGGAGAAGAAGGACTTGAAAT 1794
Query 1818 ATG-CATTGGTAAATCCAAAGATTTTGTTTCTTTGAAGTTGCAGATtatatatatataCA 1876
|| |||||||||||||||| ||||||| ||||||||||||||||| || |||||| ||
Sbjct 1795 -TGTCATTGGTAAATCCAAATATTTTGTCTCTTTGAAGTTGCAGATCAT-TATATA--CA 1850
Query 1877 AGGAAACATAGTGTTAAGAT 1896
||||||||||||||||||||
Sbjct 1851 AGGAAACATAGTGTTAAGAT 1870
Score = 147 bits (79), Expect = 5e-34
Identities = 89/94 (95%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 1 TATTCCCAAGAAAATGAGAGAAAGTATCTTCTAATCGGGAAAGACATCTCCACGTTCTTT 60
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 49 TATTCCCGAGAAAATGAGGGAAAGTATCTTCTAATCGGGAAAAACATCTCCACGTTCCTT 108
Query 61 GCCCGCCTCGTAGGTTACGCATCAGCAGCTGGGT 94
||||| ||||||||||||||||||||||||||||
Sbjct 109 GCCCGTCTCGTAGGTTACGCATCAGCAGCTGGGT 142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95330834955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5