BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478519
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related smal... 1186 0.0
AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase ho... 272 3e-72
> AT3G11730.1 | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small
GTP-binding family protein | chr3:3709325-3711529 REVERSE
LENGTH=915
Length=915
Score = 1186 bits (642), Expect = 0.0
Identities = 767/824 (93%), Gaps = 22/824 (3%)
Strand=Plus/Plus
Query 1 AAATCTCGGAAACGCAGTCTTCAGCTTCAGCTAAATCATGAGCAACGAGTACGATTATCT 60
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 102 AAATCTCGGAAACGCAG---T---CTTCAGCTAAATCATGAGCAACGAGTACGATTATCT 155
Query 61 GTTCAAGCTTTTGTTGATCGGTGACTCCTCTGTTGGAAAATCATGCCTTCTTCTTCGATT 120
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 156 GTTCAAGCTTTTGTTGATCGGTGACTCCTCTGTTGGAAAATCGTGTCTTCTTCTCCGATT 215
Query 121 CGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCAAAATTAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 CGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTCAAAATTAG 275
Query 181 AACGATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCTGGACAGGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GACGATTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGCTGGACAGGA 335
Query 241 GCGTTTCAGGACCATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCATTATTGTGTA 300
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 336 GCGTTTCAGGACCATCACTAGCAGCTATTACAGAGGAGCTCATGGAATCATTATTGTTTA 395
Query 301 TGATTGTACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGAGATCGATAG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TGACTGTACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGTGAGATCGATAG 455
Query 361 ATATGCTAATGAGAGTGTATGCAAGCTTCTAATCGGTAACAAGAATGATATGGTTGAAAA 420
|||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 456 ATATGCCAATGAGAGTGTTTGCAAGCTTTTAATCGGTAACAAGAATGATATGGTTGAAAG 515
Query 421 TAAAGTTGTTTCCACTGAAACTGGAAAGGCCTTAGCAGATGAGCTAGGAATTCCCTTTCT 480
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 516 CAAAGTTGTTTCCACCGAAACTGGAAGGGCCTTAGCAGATGAGCTTGGAATTCCCTTTCT 575
Query 481 TGAGACCAGTGCCAAGGATTCTATCAACGTCGAACAAGCATTCTTAACTATTGCCGGCGA 540
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 576 TGAGACCAGTGCCAAGGATTCTATTAACGTTGAACAGGCATTCTTAACTATTGCTGGCGA 635
Query 541 GATCAAGAAGAAAATGGGAAGCCAAACGAATGCAAACAAGACATCTGGTCCTGGAACTGT 600
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 GATAAAAAAGAAAATGGGAAGCCAAACGAATGCAAACAAGACATCTGGTCCTGGAACTGT 695
Query 601 TCAAATGAAAGGTCAGCCAATCCAACAGAACAATGGCGGTTGCTGCGGTCAGTAGTTTAA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CCAAATGAAAGGTCAGCCAATCCAACAGAACAATGGCGGTTGCTGCGGTCAGTAGTTTAA 755
Query 661 AAAATGTTATA-TCAAAACTATCTGAGACTCTCTTTCtttttttttCCCTTTTTAACT-- 717
|||||||| || |||||||||||||||||||| ||| ||| || || |||||||||
Sbjct 756 AAAATGTTTTAATCAAAACTATCTGAGACTCT-TTT-TTTACTT--CC-TTTTTAACTAA 810
Query 718 GTGTTGTGAAAACAAATGACTG---AA--CT--TA-GAACTGTAATATTTCATGTCACTG 769
||||||||||||| |||| ||| || | || ||| ||||||||| |||||| |||
Sbjct 811 GTGTTGTGAAAACCAATGGCTGTTTAAAACAACTAAGAAATGTAATATTCCATGTCGCTG 870
Query 770 TGGCTTGAATAAGCTATGGTGTTAGTTGCAAGATCCTTGTCTTT 813
|| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 871 TGTCTTGAATAAGCTATGGTGTTAGTTGCAAGATACTTCTCTTT 914
> AT5G47200.1 | Symbols: ATRABD2B, ATRAB1A, RAB1A | RAB GTPase
homolog 1A | chr5:19166902-19169026 FORWARD LENGTH=1044
Length=1044
Score = 272 bits (147), Expect = 3e-72
Identities = 370/477 (78%), Gaps = 18/477 (4%)
Strand=Plus/Plus
Query 56 TATCTGTTCAAGCTTTTG-TTGATCGGTGACTCCT-CTGTTGGAAAATCATGCCTT-CTT 112
||||||||||||||| || || || ||||| | || ||||||||||||||| ||| |||
Sbjct 146 TATCTGTTCAAGCTTCTGCTT-ATTGGTGA-TTCTGGTGTTGGAAAATCATG-CTTGCTT 202
Query 113 CTTCGATTCGCTGATGATGCTTACATTGACAGCTACATAAGCACCATTGGTGTTGACTTC 172
|| |||| ||||||||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 203 CTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACCATTGGTGTTGACTTT 262
Query 173 AAAATTAGAACGA-TTGAGCAGGATGGGAAGACGATTAAGCTGCAAATTTGGGATACTGC 231
|||||| | || | |||||||||| || ||||| || || || || || ||||| || ||
Sbjct 263 AAAATTCGCAC-AGTTGAGCAGGACGGAAAGACCATCAAACTCCAGATCTGGGACACAGC 321
Query 232 TGGACAGGAGCGTTTCAGGACCATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCAT 291
|| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGAGCTCATGGGATCAT 381
Query 292 TATTG-TGTATGATTGT-ACTGAGATGGAAAGCTTCAACAATGTGAAGCAGTGGTTGAGT 349
| | | |||||| || || || | || ||||||||||| || || || ||| ||| |
Sbjct 382 TGTCACT-TATGAT-GTCACAGACCTAGAGAGCTTCAACAACGTCAAACAATGGCTGAAT 439
Query 350 GAGATCGATAGATATGCTAATGAGAGTGT-ATGCAAGCTTCTAATCGGTAACAAGAATGA 408
|| || || | || |||| || | ||| | |||||| || | || |||||||| ||
Sbjct 440 GAAATTGACCGTTACGCTAGCGAAAATGTGAA-CAAGCTACTGGTTGGGAACAAGAACGA 498
Query 409 TATGG-TTGAAAATAAAGTTGTTTCCACTGAAACTGGAAAGGCCTTAGCAGATGAGCTAG 467
| | || | | |||||||| |||||||| || | ||||| || |||||||| || |
Sbjct 499 TCTCACTTCACAG-AAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCAGATGAACTTG 557
Query 468 GAATTCCCTTTCTTG-AGACCAGTGCCAAGGATTCTATCAACGTCGAACAAGCATTC 523
| || ||| |||||| | || ||||| || || | | ||| || ||| |||| |||
Sbjct 558 GGAT-CCCATTCTTGGAAACAAGTGCTAAAAATGCAACCAATGTGGAAGAAGCTTTC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5