BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478520
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11740.1 | Symbols: | Protein of unknown function (DUF567) ... 948 0.0
> AT3G11740.1 | Symbols: | Protein of unknown function (DUF567)
| chr3:3712379-3713446 FORWARD LENGTH=690
Length=690
Score = 948 bits (513), Expect = 0.0
Identities = 593/631 (94%), Gaps = 7/631 (1%)
Strand=Plus/Plus
Query 1 AAAAA-ATGGCGATCGTGAGCCCTAACTTCTGTGCACCGTACCCTATAGAGTTGGGAATC 59
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 43 AAAAAGATGGCGATCGTTAGCCCTAATTTCTGTGCACCGTACCCTATCGAGTTGGGAATC 102
Query 60 GTACGCAAGGTGATGACTTTAACCGATGGTAACTTCGCCGTCACGGACGTTAATGGCAAT 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 103 GTACGGAAGGTGATGACTTTAACCGATGGTAACTTCGCCGTCACGGACGTTAACGGCAAT 162
Query 120 CTCCTTTTCAAAGTGAAAGAACCAATGTTTAGCATCAGCGACAAAAGGATTTTATTGGAC 179
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 163 CTCCTTTTCAAAGTCAAGGAACCTTTGTTTAGCATCAGCGACAAAAGGATTTTATTGGAC 222
Query 180 GCATATGATACTCCAATCTTGACTTTGAGAGAAAATAAGGTGAGCTTGCATGATAGGTGG 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCATACGATACTCCAATCTTGACTTTGAGAGAAAATAAGGTGAGCTTGCATGATAGGTGG 282
Query 240 CAAGTATTTAGAGGGAAAAGTACAGACCAAAGTGATCTAGTATACACATTGAAACGATCG 299
| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 283 CTAGTATATAGAGGGAAGAGTACAGACCAAAGTGATCTATTATACACATTGAAACGATCT 342
Query 300 TCGATGATTCAAATAATGAAGCCAAAACTTGACATCTTTTTGGCTCAAAATAAAGAAATG 359
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 343 TCAATGATTCAAATAATGAAGCCAAAACTAGACATCTTTTTGGCTCATAATAAAGAAATG 402
Query 360 AAGATATGCGACTTCCATGTGAAAGGAAGTTGGATCGACCGGTCTTGTGTCGTATACGCT 419
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 403 AAGATTTGCGACTTCCATGTTAAAGGAAGTTGGATCGACCGGTCTTGTGTCGTCTACGCC 462
Query 420 GGCAAATCTGATGCCATGGTTGCTCAGATGCACAAGAAACATACCGCAGAAAGCATATTA 479
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 463 GGCAAATCTGATGCCATTGTTGCTCAGATGCACAAGAAACATACGGCACAAAGCATATTA 522
Query 480 ATAGGGAAGAGTAATTTTTCGGTTACGGTCTATCCGAATGTTGACTTTGCTTTTATAGTC 539
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 523 ATTGGGAAGAGTAATTTTTCGGTTACTGTCTATCCGAATGTTGACTTTGCTTTTATAGTT 582
Query 540 TCTCTTATTGTAATTCTCGATGACATTAACCGAGAAGATTCAGAA---TAGGAT-ATGTT 595
||||| |||||||| |||||||||||||||||||||||||||||| ||| || | |||
Sbjct 583 TCTCTCATTGTAATCCTCGATGACATTAACCGAGAAGATTCAGAAGACTAG-ATTAAGTT 641
Query 596 -TCAACTAATTTCTTTTTGTGCGTTGCAAAT 625
||||||||||||||||||||||||||||||
Sbjct 642 ATCAACTAATTTCTTTTTGTGCGTTGCAAAT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5