BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478522
Length=2354
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3567 0.0
> AT3G11760.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1);
Has 84 Blast hits to 73 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:3718416-3721251 FORWARD LENGTH=2350
Length=2350
Score = 3567 bits (1931), Expect = 0.0
Identities = 2224/2364 (94%), Gaps = 26/2364 (1%)
Strand=Plus/Plus
Query 1 CTAGATTCTCTCTAGGTTTCCCTAAATTTCTCAACTACTTGAAAAGAGTTTTGTTACGTT 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 CTAGATTCTCTCTAGGTTTCCCTAAATTTCTCAACTACTCCTAAAGAGTTTTGTTACGTT 60
Query 61 TCTTTGTTCCTGTAAGATTCTCtttttttttttGCTTGACGACTCCAAATTATTTTTAAT 120
|| || ||| ||||||| ||||||| ||||||||||||||| | || | |
Sbjct 61 TC--TG----TGT--GATTCTC---CTTTTTTT-CTTGACGACTCCAAA-T-TTCGT--T 104
Query 121 TTTGCGTAAATGGTGGTGAAAATGATGAAGTGGCGGCCATGGCCGCCGTTAGTTACGAGG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 105 TTTGCGTAAATGGTGGTGAAGATGATGAAGTGGCGGCCATGGCCGCCGTTAGTTACGAGG 164
Query 181 AAATATGAGGTGAAGCTAGCCGTGAAGAGGCTTGAAGGTTGGGATCTGGTGCGGGAAGGT 240
||||| ||||||||||| ||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 165 AAATACGAGGTGAAGCTTTCCGTGAAGAAGCTTGAGGGTTGGGATCTGGTGAGGGAAGGT 224
Query 241 GTACCGGAGAAAGAGAGATTAACGGTGGAGATTCGTTGGAAAGGACCTAAGGCGACATTG 300
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 225 GTACCGGAGAAAGATAGATTAACGGTGGAGATTCGTTGGAAAGGTCCTAAGGCGACATTG 284
Query 301 GGATCTTTGAGAAGGTCGGTGAAGAGGAATTTCACCAAGGAAGCTGTGGGAGAAAGCGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GGATCTTTGAGAAGGTCGGTGAAGAGGAATTTCACCAAGGAAGCTGTGGGAGAAAGCGAT 344
Query 361 ATCGTTTCATGGGAAGACGAAGAGTTTCAGAGCTTATGTTCACTCACTTCTTACAAAGAC 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 345 GTCGTTTCATGGGAAGATGAAGAGTTTCAGAGCTTATGTTCACTCACTTCTTACAAGGAC 404
Query 421 AGTTTGTTTTATCCTTGGGAGATTGCTTTCTCTGTCTTCACCAATGGAATGAAACAAGGG 480
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 405 AGTTTGTTTTATCCTTGGGAGATAACTTTCTCTGTCTTCACCAATGGAATGAAGCAAGGG 464
Query 481 CAGAAGAATAAAGCTCCTCTTGTTGGAACTGCATTTTTGAATCTTGCTGAGTACGCGCGT 540
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 465 CAGAAGAATAAAGCTCCTGTTGTTGGAACGGCATTTTTGAATCTTGCTGAGTACGCGTGT 524
Query 541 GTGACCGATAAAAAAGAATTCGATATTAACATACCTCTTACGCTCTCTGCCTGTGTGACC 600
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||
Sbjct 525 GTGACCGATAAAAAAGAATTCGATATAAACATACCACTTACGCTCTCTGCTTGTGTGGCC 584
Query 601 TCTGAGCCACATCCATTGCTCTTTGTATCATTAAGCCTGCTTGAGCTTAGAACCACTCCA 660
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 585 TCTGAGACACATCCTTTGCTCTTTGTATCATTGAGCCTGCTTGAGCTTAGAACTACTCCA 644
Query 661 GAAACATCAGACTCAGCAGCACAAACCGCGGTTGTGCCTGTGCCTGTCCCGTCTCCATCG 720
|||||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 645 GAAACATCAGACTCGGCAGCACAAACCGCGGTTGTGCCTTTGCCTCTCCCATCTCCATCG 704
Query 721 CCACAACAGCCTACTGAAACTCACTCAATTGAAAAGGAGGATGTCTCTGCAATCAAAGCT 780
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 705 CCACAACAGCCTACTGAAACTCACTCAGTTGAGAAGGAGGATGTCTCTGCAATCAAAGCT 764
Query 781 GGTCTCAGAAAAGTCAAGATTTTTACAGAGTTTGTTTCTACAAGGAAAGCCAAGAAGGCT 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 765 GGTCTCAGAAAAGTCAAGATTTTCACAGAGTTTGTTTCTACAAGGAAAGCCAAGAAGGCT 824
Query 841 TGCCGGGAAGAAGAAGGCAGATTCTCAAGCTTTGAATCATCAGAATCACTTGATGATTTC 900
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 TGCAGGGAAGAAGAAGGCAGATTCTCAAGCTTTGAATCATCAGAATCGCTTGATGATTTC 884
Query 901 GAGACAGATTTTGATGAAGGCAAAGAAGATTTGATGAGTGTGAGAAAATCTTTCTCCTAC 960
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 885 GAGACAGATTTTGATGAAGGCAAAGAAGAATTGATGAGTATGAGAAAATCTTTCTCTTAT 944
Query 961 GGACCTTTGTCTTATGCAAATGGTGCGGGAACTTCGTTAAACTGTGGCGCGAAGGTTAGC 1020
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 945 GGACCTTTGTCTTATGCAAATGGTGTGGGAACTTCATTAAACTGTGGCGCGAAAGTTAGC 1004
Query 1021 GATGAAGATGAAGATTGGGTTTATTATAGCCACAGGAAATCCGACGTTGGAGCAGGCTGC 1080
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1005 GATGAAGACGAAGATTGGGTTTATTATAGCCACAGGAAATCAGACGTTGGAGCAGGTTGC 1064
Query 1081 TCGGACGCTGAAGATTCCGCTGCGGGTTTGGTATATGAGACATCACTGCTTCCACGGCGT 1140
|| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1065 TCTGATGCTGAAGATTCCGCTGCGGGTTTGGTGTATGAGGCATCACTGCTTCCACGGCGT 1124
Query 1141 AGCATATTGCCGTGGAGAAAGCGGAAGTTGAGTTTTAGGTCGCCGAAATCCAAAGGAGAG 1200
||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 1125 AGCATATTGCCATGGAGAAAGAGGAAGTTGAGCTTTAGGTCTCCGAAATCCAAAGGAGAG 1184
Query 1201 CCTTTGTTAAAGAAGGATAATGGAGAAGAAGGTGGAGATGACATTGATTATGATCGGAGG 1260
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1185 CCTTTGTTAAAGAAGGATAATGGAGAAGAAGGTGGAGATGACATTGATTTTGATCGGAGG 1244
Query 1261 CAACTTAGCTCAGATGAAGCTCATCCTCTTTTTGGGAGCAAGATTGATGAAGATTCATCT 1320
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1245 CAACTTAGCTCAGATGAAGCTCATCCTCCATTTGGGAGCAAGATTGATGAAGATTCATCT 1304
Query 1321 GCTAATCCGCGATCTTCTTTCTCGGAGTTTGGAGAAGACAGTTTTGCGATTGGAAGTTGG 1380
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GCTAATCCACGAACTTCGTTCTCGGAGTTTGGAGAAGACAGTTTTGCGATTGGAAGTTGG 1364
Query 1381 GAGGAGAAAGAAGTGATAAGCCGAGATGGACACATGAAGCTTCAGACAAATGTCTTTCTT 1440
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1365 GAGGAGAAAGAAGTGATAAGCCGAGATGGACACATGAAGCTCCAGACAAGTGTCTTTCTT 1424
Query 1441 GCTTCGATCGACCAGAGAAGCGAGCGAGCAGCTGGTGAGAGTGCCTGCACCGCTCTTGTA 1500
||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1425 GCTTCTATTGACCAGAGAAGCGAGCGAGCAGCTGGTGAGAGTGCATGCACTGCTCTTGTA 1484
Query 1501 GCGGTTGTTGCGGATTGGTTTCAGAAGAATGGTAACCTAATGCCGATCAAGTCTCAGTTT 1560
||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1485 GCGGTCATTGCGGATTGGTTTCAGAAGAATGGTAATCTCATGCCAATCAAGTCTCAGTTC 1544
Query 1561 GATAGTTTGATCAGAGAAGGATCTTTAGAGTGGAGAAACCTCTGCGAAAACGAAACGTAT 1620
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1545 GATAGTTTGATCAGAGAAGGTTCTTTAGAATGGAGAAACCTCTGCGAAAACGAAACGTAT 1604
Query 1621 ATGCAGAAATTCCCTGACAAGCATTTCGATCTTGATACCGTGGTACAAGCAAAGATTCGT 1680
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1605 ATGCAGAAATTCCCTGACAAGCATTTCGATCTTGATACCGTGCTACAAGCAAAGATACGG 1664
Query 1681 CCTCTAACCGTTATCCCAGGAAAGTCCTTTGTTGGGTTTTTCCACCCTGACGGGATGATC 1740
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1665 CCTCTAACCGTTATCCCCGGAAAATCCTTTGTTGGGTTTTTCCATCCTGATGGGATGATC 1724
Query 1741 AACGAGGGAAGATTCGAGTTTCTACAAGGCGCAATGTCTTTCGATAGTATTTGGGCTGAG 1800
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AACGAGGGTAGATTCGAGTTTCTACAAGGCGCAATGTCTTTCGATAGTATTTGGGCTGAA 1784
Query 1801 ATTATTAGTCTCGAGGAAAGCTCCGCGAATAGCGATAGTTATGATGATGACTCGTCACCG 1860
||||||||||| ||||||||||| |||||| | ||||| ||||||||||| ||| |||||
Sbjct 1785 ATTATTAGTCTGGAGGAAAGCTCGGCGAATGGTGATAGCTATGATGATGATTCGCCACCG 1844
Query 1861 CATGTTTACATAGTGAGTTGGAATGATCACTTCTTTGTCCTCAAAGTTGAAAAGGAAGCT 1920
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1845 CACGTTTACATAGTGAGTTGGAACGATCACTTCTTTGTCCTCAAAGTTGAAAAAGAAGCT 1904
Query 1921 TACTATATCATTGACACACTTGGAGAAAGGCTTTACGAGGGTTGTGATCAAGCTTACGTT 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TACTATATCATTGACACACTTGGAGAAAGGCTTTACGAGGGTTGTGATCAAGCTTACGTT 1964
Query 1981 TTGAAATTCGACCATAAAACTGTCATCCACAATATTCTTCATACAGAGGAATCGGGATCC 2040
|||||||||||||||||||| ||||||||||| |||||||| ||||||||| | ||||||
Sbjct 1965 TTGAAATTCGACCATAAAACCGTCATCCACAAGATTCTTCACACAGAGGAAGCAGGATCC 2024
Query 2041 GAATCAGAACCTGAATCAGAGATTGTGTGCAGAGGGAAGGAGTCATGTAAAGAGTATATT 2100
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2025 GAATCAGAACCTGAATCAGAGATTTTGAGCAGAGGGAAGGAGTCATGTAAAGAGTATATT 2084
Query 2101 AAGAATTTCTTGGCGGCGATACCAATCAGGGAGTTGCAAGAGGATATCAAGAAAGGATTA 2160
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2085 AAGAATTTCTTGGCGGCCATACCAATTAGGGAGTTGCAAGAGGATATCAAGAAAGGATTA 2144
Query 2161 GCCTCGACCGCGCCTGTTCATCACCGTTTACAGATCGAGTTTCACTACACCACAAACGCA 2220
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2145 GCCTCAACCGCGCCTGTTCATCACCGTTTACAGATCGAGTTTCATTACACCACAAACGCA 2204
Query 2221 GAGATTACCAGTCTG-AAA-GCCTAGGCAGAGTTGCTAACGTTTTGTTGAGTTTCTTGCA 2278
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2205 GAGATTACCAGTCTATAAAAGCCTAGGCAGAGTTGCTAACGTTTTGTTGAGTTTCTTGTA 2264
Query 2279 AGTCTTGTAACTAACTTGTGAATGTGATTTAGAGTTAAACCAGTTTGTA-C---CTA--- 2331
||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2265 AGTTTTGTAACTAACTTGTGAATGTGATTTAGAGTTAAACCAGTTTGTATCTAACTATCC 2324
Query 2332 A-GGAATTTACATTTTTGATCGTT 2354
| |||||||||||||||| |||||
Sbjct 2325 AAGGAATTTACATTTTTGCTCGTT 2348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116866868760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5