BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478524
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11780.2 | Symbols: | MD-2-related lipid recognition domain... 614 4e-175
> AT3G11780.2 | Symbols: | MD-2-related lipid recognition domain-containing
protein / ML domain-containing protein | chr3:3724136-3725593
REVERSE LENGTH=823
Length=823
Score = 614 bits (332), Expect = 4e-175
Identities = 427/470 (91%), Gaps = 17/470 (4%)
Strand=Plus/Plus
Query 1 TCTGTCTTTGTCTCTTGCTTGTTTAG-------TCT--T-CTCGTCCTC-A--ATCATCA 47
|||||||||||||||||||||||||| ||| | ||||||||| | |||||||
Sbjct 4 TCTGTCTTTGTCTCTTGCTTGTTTAGTCTCTCCTCTCCTCCTCGTCCTCAATCATCATCA 63
Query 48 TCTGAGAATTCGCTGCTTTTGGTTCTTCGAGAGAATACCTAATTATCATCAATCATGTCG 107
||||||||||||| ||||||| |||||||| |||| | |||||||||||||||||||||
Sbjct 64 TCTGAGAATTCGCAGCTTTTGCTTCTTCGATAGAAAATCTAATTATCATCAATCATGTCT 123
Query 108 AAGGTT-ACGGGATT-TACTTCTCTCGCTATCTCTTATTTTCTTTTCGTTTCAACGATTG 165
|| ||| |||||||| | | ||||||||||||||||||||||| || |||||||||||||
Sbjct 124 AA-GTTCACGGGATTCT-CATCTCTCGCTATCTCTTATTTTCTCTTGGTTTCAACGATTG 181
Query 166 TCGCAGCCACCGATGTTCACTACTGCGATAATAATGAAGAGTATGAAGTAAAAGTACAAG 225
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 TTGCAGCCACCGATGTTCACTACTGCGATAATAACGAAGAGTATGAAGTAAAAGTACAAG 241
Query 226 GAGTTGATATAATTCCTTATCCTGTAGCTAGAGGCGCGCCAGCCACTTTCAGCATTTCTG 285
|||||||||||| |||||||||| |||||||||||| |||||| |||||||| |||||||
Sbjct 242 GAGTTGATATAACTCCTTATCCTATAGCTAGAGGCGAGCCAGCTACTTTCAGAATTTCTG 301
Query 286 CTAACACAGACACTGAGATCTCTAGCGGCAAGTTGGTGATCGAAGTCTCATACTTTGGAT 345
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 302 CTAACACAGACACTGAGATCTCGAGCGGCAAGTTGGTGATCGAAGTTTCCTACTTTGGAT 361
Query 346 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCGGTTG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GGCATATTCATTCTGAGACACATGATCTTTGTGATGAGACAAGTTGTCCTGTGGCCATTG 421
Query 406 GAGATTTCGTGGTAGAACACTCGCAAGTTCTACCCGGATATACTCCTCCT 455
|||||||| |||||| |||||||||||||| ||||||||||| ||||||
Sbjct 422 GAGATTTCTTGGTAGCGCACTCGCAAGTTCTTCCCGGATATACCCCTCCT 471
Score = 316 bits (171), Expect = 1e-85
Identities = 230/256 (90%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 456 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GGTTCATACTCACTAAAAATGAAGATGCTTGATGGACGCAAGAAGGAGTTAACTTGCATC 585
Query 516 AAATTCTCATTTGAGATTGGATTTTTATCATCCGTGGCCGACATTTAGAGCT--TAT--T 571
|| ||||||||||| ||||||||| ||| |||||||||||||| ||||||| | | |
Sbjct 586 AAGTTCTCATTTGATATTGGATTTGGATCCTCCGTGGCCGACATGTAGAGCTGATTTGCT 645
Query 572 CG-C----T----CATCTTGTTCTATACCATTAAACCACTCTCATTTATTTTGTATAAAA 622
|| | | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 646 CGACGGGATACACCATCTTGTTCTATACCATGGAACCACTCTCATTTATTTTGTATAAAA 705
Query 623 TACACTCTTTT-CTATACATAATTGTTGATCAAAACCCCTTTGAAAATTCTCATTCTGGA 681
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 706 TACACTCTCCTGCTATACATAATTGTTGATCAAAAACCCTTTGAAAATTCTCATTCTGGA 765
Query 682 CCATTCATGAATCCCC 697
||||||||||||||||
Sbjct 766 CCATTCATGAATCCCC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5