BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478525
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1419 0.0
> AT3G11800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G44150.1);
Has 74 Blast hits to 73 proteins in 18 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:3726108-3727729
FORWARD LENGTH=954
Length=954
Score = 1419 bits (768), Expect = 0.0
Identities = 895/953 (94%), Gaps = 21/953 (2%)
Strand=Plus/Plus
Query 1 TGAATCGGAGTTTTCG-AAATTTTGGAA-GGAGCTTTT-TGACAGATGGCTAGATTCCTT 57
|||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||| ||
Sbjct 3 TGAATCGGAGTTTTCGAAAATTTT-GAAGGGAGCTTTTCTGACAGATGGCTAGATTCTTT 61
Query 58 CTTCTCTGTTTCCTCTTCGCGGCGGTGCTAACGTCATCATTGACGGAGGCCGGCGACAAT 117
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 CTTCTCTGTTGCCTCTTCGCGGCGGTGCTGACGTCATCATTGACGGAGGCCGGCGACAAT 121
Query 118 AACCAAGTATACTCGCCTTGTTCAGATTCTACTGTTGCGATCGGCGATGGATTCACTTTC 177
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AATCAAGTCTACTCGCCTTGTTCAGATTCTACTGTTGCGATCGGCGATGGATTCACTTTC 181
Query 178 GGCATTGCCTTCGCGGCGAGAGATTCTTTCTTCAGTACAAATCGTTCC-GATCATGTTCA 236
|||||||||||||| |||| |||||||||||||||||||||||| ||| ||| |||||
Sbjct 182 GGCATTGCCTTCGCTGCGAAAGATTCTTTCTTCAGTACAAATCGATCCAAATC-CGTTCA 240
Query 237 GTACTCTCCCTGCGATCGTCACCGTCTCTCGCTCAACGGTAACTCTGAGGTCGCCGTGTT 296
||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||
Sbjct 241 GTACTCTCCCTGCGATCATCGCCATCTCTCGCTCAACGGAAACTCTGAGGTCGCCGTGTT 300
Query 297 CAGACCTAAAGTCGATGAGATCACTCTCCTTACCATCAATACCTCTAGTTCCTCCAGTTT 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CAGACCTAAAGTCGATGAGATCACACTCCTTACCATCAATACCTCTAGTTCCTCCAGTTT 360
Query 357 CCGTCCGGATGCTTCAAAGGGATATATGGTTGCATTCGCTGGTGCAAAATACGCTGCAAG 416
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CCGCCCGGATGCTTCCAAGGGATATATGGTAGCATTCGCTGGTGCAAAATACGCTGCAAG 420
Query 417 ATCAATCCCAATTATGGTTGCAGACAGCAATTACATCGTGACAAGCTTCACCCTTGTTCT 476
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 ATCACTCCCAATTATGGTTGCAGACAGCAATCACATCGTGACAAGCTTCACCCTTGTTCT 480
Query 477 TGAGTTCCAGAAGGGCAGGCTTGAGGAA-ATGTTCTGGAAAAAAGACGGATGCTCGAAAT 535
|||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 481 TGAGTTCCAGAAAGGAAGGCTTGA-GAACATGTTCTGGAAGAAAGACGGATGCTCGAAGT 539
Query 536 GTTCTGGAGATTCGAAATTCGTGTGCCTCAACAAAGAAGAATGTGCAATCAAGACGCAAA 595
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 540 GTTCTGGAGATTCGAAATTCGTGTGCCTCAACAAAGAAGAATGTGCGATCAAGCCGCAAA 599
Query 596 GCTGCAAGAACCAAGGAGGACAAGTAGATTGTAGCTTGGGGATCCAATTGGCGTTTTCAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 ACTGCAAGAACCAAGGAGGACAAGTAGATTGTAGCTTGGGGATCCAATTGGCGTTTTCGG 659
Query 656 GCACGGATAAGCACTACACTGCGTTGAATTCGTGGTATGAGGTTGCAAATCTGAAGCAGT 715
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCACGGATAAGCACTACACCGCGTTGAATTCGTGGTATGAGGTTGCAAATCTGAAGCAGT 719
Query 716 ACTCGCTCTATGGCCTCTACTCCAATCTTAAGGACTCACTAACCAACCCATTCAAAAACA 775
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 720 ACTCGCTCTATGGCCTCTACTCCAATCTAAAGGACTCACTAACCAACCCATTCAAGAACA 779
Query 776 TCTTCTGATGACTTTCTTTCTCCTTTGTGTGTTGCTACTCTTGTAAttttgtattatttt 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTTCTGATGACTTTCTTTCTCCTTTGTGTGTTGCTACTCTTGTAATTTTGTATTATTTT 839
Query 836 ttt---tg-ttt-t----att-tct-ttcc-tatgatttatgctacatattgtattttat 883
|| || ||| | ||| | | |||| |||||||| ||||| ||||||||||||||
Sbjct 840 TTCACCTGCTTTCTTTGTATTATTTCTTCCGTATGATTTTTGCTATATATTGTATTTTAT 899
Query 884 ttCTTGG-CGTGTAACTTTTTCATGAATTAAATAGTCAGAATACTCTCAGATA 935
| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TACTTGGGCGTTTAACTTTTTCATGAATTAAATAGTCAGAATACTCTCAGATA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5