BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478531
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11850.1 | Symbols: | Protein of unknown function, DUF593 |... 2645 0.0
AT5G06560.1 | Symbols: | Protein of unknown function, DUF593 |... 791 0.0
> AT3G11850.1 | Symbols: | Protein of unknown function, DUF593
| chr3:3738897-3741403 REVERSE LENGTH=1976
Length=1976
Score = 2645 bits (1432), Expect = 0.0
Identities = 1717/1849 (93%), Gaps = 41/1849 (2%)
Strand=Plus/Plus
Query 455 GAATCTTGGAATTGGGAATGGAGTCTCCGATCAAATGTTGCGACTGTGGATGCGATTGTT 514
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATCTTGGAATTGGGAATGGAATCTCCGATCAAATGTTGCGACTGTGGATGCGATTGTT 179
Query 515 GTTCTTCCT---CAGGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGATGAATTAC 571
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GTTCTTCCTCCCCTGGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGACGAATTAC 239
Query 572 AGACCGAGAAACGATTCTCTATACCGGAGCTGGATGACCTAGACATGTTCTCTAATCCTA 631
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 240 AGACCGAGAAACGATTCTCGATACCGGAGCTGGACGACCTAGACATGTTCTCTAATCCTA 299
Query 632 GAGTCCAAATCGAGAACGAATGTGAATTACTACGCGAGACTGTTAGCAATCAACAGCAAA 691
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGTCCAAATTGAGAACGAATGTGAATTACTACGCGAGACTGTTAGCAATCAACAGCAAA 359
Query 692 CGATTCAGGATTTGTATCATGAGCTCGAGGAAGAGCGTATTGCTTCATCAACAGCTGTAG 751
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||
Sbjct 360 CGATTCAGGATTTGTATCATGAGCTTGAGCAAGAGCGTATTGCTTCATCAACTGCTGCAG 419
Query 752 ATGAAGCACTGAATCTGATTGGGAAGTTGCAGAAG-G-AAAAGACTGATATGCTGA--TG 807
||||| || | || ||||| || |||| || | | ||||| | | || | || ||
Sbjct 420 ATGAAACAGTAAAGATGATTCAGACGTTGGAG-CGTGAAAAAG-CAAAAAT-C-GACTTG 475
Query 808 GAACTGACACAGCTTCAGCGTTGTGTTAAGGACAGATTGACTTATGAAAACGC-AGAGAT 866
||||||| ||||||||||||| ||||| | || | ||||| |||||||||| | ||||||
Sbjct 476 GAACTGAAACAGCTTCAGCGTAGTGTTGACGAAACATTGAATTATGAAAAC-CAAGAGAT 534
Query 867 TGAGGCATTGGAAGCTGTGGTTTATCAAAGGGATCAGACGATTCAGGCTCTTACATTTGA 926
||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 535 TGAGGCATTGGAAAATATGGTTTATCAAAGGGATCAGACGATTCAGGCTCTTACGTTTGA 594
Query 927 AACTCAGGCTTATAAGCACAGAATGATGAGCTTTGGGCTAACCGAGGCAGAAGCTGATGG 986
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 595 AACTCAGGCTTATAAGCACAGAATGATGAGTTTTGGGCTAACCGAAGCAGAAGCTGATGG 654
Query 987 TGAGAGGAGCTTGCTTAGTCGTAACCCGAGCATGGTCGACATTAATTCTGAATATGATTT 1046
|||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
Sbjct 655 TGAGAGGAGCTTGCTTAGTCGTAACCCGAGCATGATCGACTTTAGTTCTGAATATGACTG 714
Query 1047 CCCTATACCTGATTACCCTCCTC-TAAAGTGCAATATTAATGAGAACCAAGATCCTCTTG 1105
||||| || ||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 715 CCCTACACAAGATTACCCTCCTCTTAAA-TGCAATATTAATGAGAACCAAGACCCTCTTG 773
Query 1106 AGGCTGATATCTATGTTGCAGATGATGAAAACTACCCACCAGCTGATTCCCCTCAT-GGA 1164
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||
Sbjct 774 AGGCTGATATCTATGTTGCAGATGATGAGAACTATCCACCAGCTGATTCTCCTCATGGGA 833
Query 1165 CGAGAACATTTAAAGACTTTGGATCGAAGACTCAGCCAGATGGAGAC-ATATCCTAGCTT 1223
||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 834 -GAGTACATTTAAAGACTTTGGATCGAAGACTCAGCCAGATGGAGACGA-ATCCTAGCTT 891
Query 1224 TACTCAGTTGAATAGAGGGAGAGATGTTTCAGAGAAGTCAATGGTTGGTCAGAGTCCTAG 1283
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct 892 TACTCAGTTGAATAGAGGGAGGGATGTTTCAGAGAAGGGGATGGTTGGTGAGAGTCCTAG 951
Query 1284 GCGTCAAAGACATTTTAGGAGGATTTCCCCTACTGG-T--TCAAGTTCACACTTGGGAGC 1340
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 952 GCGTCAAAGACATTTTAGGAGGATTTCCCCTACTGGTTCATCAAGTTCACACTTGGGAGC 1011
Query 1341 ATCTAAAGAACTAAGACGTGATGCTTTTGTTGATTCCCCGAGGTCCGGAAGCT--A---C 1395
||||||||||||||||| ||||| |||||||||||||||||||||| ||||| | |
Sbjct 1012 ATCTAAAGAACTAAGACCTGATGTTTTTGTTGATTCCCCGAGGTCCCAAAGCTACAGCTC 1071
Query 1396 -AAGAAAATGGAAGATGTCTCATATACAGAGAATAATAATGCTAAAGCCGACTCATCGGA 1454
|||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 1072 TAAGAAAATGGAAGATGTCTCGTATACAGAGAATAATAATGCTAAAGATGACTTGTCGGA 1131
Query 1455 AATAGGAGATGACATGAGTGATAGAGTTTATACCATTGATTCTGTCCATCACAGCAGTGT 1514
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 AATAGGAGATGACATGAGTGATAGAGTTTATACCATTGATTCTGTTCATCACAGCAGTGT 1191
Query 1515 GTCTCATAGTGGTGGTGTAACTGAGCAGAAGCTTGAGGATGGCACTTCTGATGGCAATGT 1574
| |||||||||| |||||| | ||||||||| |||||||||| ||||||||||||||||
Sbjct 1192 GGCTCATAGTGGCGGTGTAGCGGAGCAGAAGATTGAGGATGGTGCTTCTGATGGCAATGT 1251
Query 1575 GGTTTTCCCGAGAGAACACACGGATCTTGGTGATCCTGATATAACGAAACTCTACATGAG 1634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TGTTTTCCCGAGAGAACACACGGATCTTGGTGATCCTGATATAACGAAACTCTACATGAG 1311
Query 1635 GCTTCAAGCACTGGAGGCTGACAGGGAATCAATGAAACATGCGCTTCTCTCTATGAGGAC 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GCTTCAAGCACTGGAGGCTGACAGGGAATCAATGAAACATGCGCTTCTCTCTATGAGGAC 1371
Query 1695 TGAAAAGGCTCAAATGGTACTGTTGAAAGAAATTGCTCAACATTTGTCAAAGGAAGTTGT 1754
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1372 TGAAAAGGCTCAAATGGTACTGTTGAAAGAAATTGCTCAACACTTGTCAAAGGAAGTTGT 1431
Query 1755 CCCTCAACGGAGATTGCCTCTACGTAAAGCATCTATTGCTGGGCCATTGACTTTCACGCC 1814
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1432 CCCTCAACGGAGATTGCCTCTACGTAAAGCATCTATTGCTGGGCCATTGACTTTTACGCC 1491
Query 1815 GGTCTTTAAGTGGATCACATCTTTTGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATA 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGTCTTTAAGTGGATCACATCTTTTGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATA 1551
Query 1875 CATGTTTGGAATGTCAGGAAACAACATCGGCTTGCAAATGCTTCTAGAAAAAGTCCCTCG 1934
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CATGTATGGGATGTCAGGAAACAACATCGGCTTGCAAATGCTTCTAGAAAAAGTCCCTCG 1611
Query 1935 GTCACGAAAATGGCGATGTCTTAGGAGCACGCAAGTGTGAAACAGATAAAAACCATTTCA 1994
|||| | |||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1612 GTCAAGGAAATGGCGATGTCTTAGGAGCACGCAAGTGTGAAACAGATCCAATCC-TTTCA 1670
Query 1995 AGCAAACAAAATCACTCTCCTGACTCTAGAATTCGAAGCACATAATGTCAAATACTGATG 2054
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1671 AGCCAACAAAATCACTCTCCTGACTCTAGA-TTCGAAGCACATAATGTCAAATACTGATG 1729
Query 2055 GATTGGATTG-CGAGGTAACATTTGTGTGGC-TTTCTTCAACTTGAATTGGATTCTCGTT 2112
| |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1730 --TGGGATTGGCGAGGTAACATTTGTC-GGCCTTTCTTCAACTTGAATTGGATTCTCGTT 1786
Query 2113 CTTGGGTTGCAGAAAAAATGTATGTGATGTGC-ACTTTTCAATCGGTTTTCC-CTAATAT 2170
||||||||||||| ||||||||| || ||||| | ||||||||| ||||||| | |||||
Sbjct 1787 CTTGGGTTGCAGAGAAAATGTATTTGCTGTGCGA-TTTTCAATCTGTTTTCCTC-AATAT 1844
Query 2171 TTCAACTATTGTATAAAAGAATTGGGTTGAAGAATGATATAACTCAGAGGCTATACAATC 2230
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TTTAACTGTTGTATAAAAGAATTGGGTTGAAGAATGATATAACTCAGAGGCTATACAATC 1904
Query 2231 TTTGTATGGTTTCTAACATAAATTGTTTCATTCATGGATT-TGTTTTTC 2278
||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1905 TTTGTATGGTTTCTAACATGAATTGTTTCATTCATGGATTCT-TTTTTC 1952
Score = 137 bits (74), Expect = 4e-31
Identities = 110/126 (87%), Gaps = 8/126 (6%)
Strand=Plus/Plus
Query 261 TGTTTCTCTGTTTCGTGGAGGGGAGACAAAATTCTCTCTCTCGAATTTCTGGGTCGCCAA 320
||||||||||||||||||| ||||||||||| | |||||| | |||||||||||||||||
Sbjct 1 TGTTTCTCTGTTTCGTGGACGGGAGACAAAA-T-TCTCTC-C-AATTTCTGGGTCGCCAA 56
Query 321 GGGAATTGGCTTCAGCTGGAtttttttGTTTTATCAA-CC-GTATAAAGTTTCCGATGAT 378
||||||||||||||||||||||||||| |||| | || | | || | ||||||||||
Sbjct 57 GGGAATTGGCTTCAGCTGGATTTTTTTTTTTTTTTTTTCCTG-AGAA-GCTTCCGATGAT 114
Query 379 TTAGGG 384
||||||
Sbjct 115 TTAGGG 120
> AT5G06560.1 | Symbols: | Protein of unknown function, DUF593
| chr5:2003304-2006188 REVERSE LENGTH=2465
Length=2465
Score = 791 bits (428), Expect = 0.0
Identities = 1179/1523 (77%), Gaps = 126/1523 (8%)
Strand=Plus/Plus
Query 526 GGTTCATGGATTCGATCTGTGAAGAAGAGAAGACACGATGAATTACAGACCGAGAAAC-G 584
||||| | | |||| ||||||||| ||| || | |||| ||||| ||| ||||||| |
Sbjct 625 GGTTCTTTGCTTCGGTCTGTGAAG-AGA-AA-ATACGAGGAATTTGAGAATGAGAAACTG 681
Query 585 ATTCTCTATACCGGAGCTGGATGACCTAGACATGTTC-TCTAATCCTAGAGTCCAAATCG 643
||| | |||||||||||||| | || ||| || || || ||| ||| ||| ||||| |
Sbjct 682 TTTCAC-ATACCGGAGCTGGA-G--CTGGACTTG-TCTTCCAATGCTAAAGTTCAAATTG 736
Query 644 AGAACGAA-TGTGAATTAC-TACGCGAGACTGTTAGCAATCAACAGCAAACGATTCAGGA 701
|||| ||| || || | | || | ||||||||||||| ||||||||| ||||||| ||
Sbjct 737 AGAATGAATTG-GAGCTGCTTA-GGGAGACTGTTAGCAGTCAACAGCAGTCGATTCAAGA 794
Query 702 TTTGTATCATGAGCTCGAGGAAGAGCGTATTGCTTCATCAACAGCTG-TAGATGAAGCAC 760
||||||| | ||||| || |||||||| | |||| | || ||||||| || ||| |||
Sbjct 795 TTTGTATGAGGAGCTTGATGAAGAGCGGAATGCTGCTTCGACAGCTGCAAG-TGAGGCAA 853
Query 761 TGAATCTGAT-TGGGAAGTTGCAGAAGGA-AAAGACTGATA-TGCTGATGGAACTGACAC 817
|| | |||| | || |||||||| ||| |||| |||| | | | |||||| ||| ||
Sbjct 854 TGTCTATGATAT-TGAGGTTGCAGAGGGATAAAG-CTGA-ACTCCAAATGGAATTGAGAC 910
Query 818 AGCTTCAGC-GTTGTGTTAAGGA-CAGATTGACTTATGA-AAACGCAGAGATTGAGGCAT 874
|| || ||| ||| || | |||| | || || |||| ||| |||| || || ||
Sbjct 911 AGTTTAAGCGGTT-TGCTGAGGAGAAAATGGA-GCATGATCAAC-AAGAGCTTTTGG-AT 966
Query 875 -TGGAAGCTGTGGTTTATCAA-AGGGATCAGACGATTCAGGCTCTT-ACATTTGAAACTC 931
|||||| | || | ||| || ||||| ||||| ||||||||| || ||||||||| |||
Sbjct 967 CTGGAAGATTTGATATAT-AAGAGGGAGCAGACTATTCAGGCT-TTGACATTTGAAGCTC 1024
Query 932 AGGCTTATAAGCACAGAATGATGAGCTTTGGGCTAACCGAGGCAGAAGCTG-ATGGTGAG 990
||||||||||||| ||||||||||| |||||| | || ||||| || | || | | |||
Sbjct 1025 AGGCTTATAAGCATAGAATGATGAGTTTTGGGTTCACTGAGGCTGAGGTTGAAACG-GAG 1083
Query 991 AGGAGCTTGCTTAGTCGTAACCCGAGCATGGTCGACATTAATT-CTGAATATGATTTCCC 1049
| || | ||||||| ||||| ||||||||| |||| | | ||| | |||||||| ||||
Sbjct 1084 AAGAACATGCTTAGCCGTAATCCGAGCATGATCGAAAATGATTAC-CAATATGATCTCCC 1142
Query 1050 TATACCTGATTACCCTCCTCTAAAGTGCAATATTAATGAGAACCAAGATCCTCTTGAGGC 1109
| | |||||||||||||| ||||||||||| | |||||||||| || ||| || |||||
Sbjct 1143 CACATCTGATTACCCTCCTATAAAGTGCAATGTGAATGAGAACCCAGGTCCCCTGGAGGC 1202
Query 1110 TGATATCT-ATGTTGCA-GATGATGAAAACTACCCACCAGCTGATTCCCCTCATGGACGA 1167
|||||| | |||||| | |||| |||||| |||||| |||||||| |||| ||
Sbjct 1203 TGATAT-TGATGTTG-ATGATGTTGAAAAGTACCCATTGGCTGATTCACCTC----AC-- 1254
Query 1168 GAACATTTAAAGACTTTGGATCGAA-GACTCAGCCAGATGGAGACATATCCTAGCTTTAC 1226
|| || ||||||||||| |||| || | || |||||||||| | |||||||||||||
Sbjct 1255 --CCA-TTGAAGACTTTGGAACGAAGGA-TAAGTCAGATGGAGAGAAATCCTAGCTTTAC 1310
Query 1227 TCAG-----T--TGA---A--TAGAGGGAGAGATGT-TTCAGAGAAGTCAA--TGGTTGG 1271
|||| | ||| | | |||||||| || | | |||||||| || |||||||
Sbjct 1311 TCAGCCTACTGGTGATGTATCTGGAGGGAGACAT-TATACAGAGAAG--AACGTGGTTGG 1367
Query 1272 TCAGAGTCCTAGGCGTCAAAGACATTTTAGGAGGATTTCCCCTACTGGTTCAAGTTCACA 1331
|||||||||||||| ||| |||||||| |||||| ||||| || | || |||||||||
Sbjct 1368 TCAGAGTCCTAGGCATCAGAGACATTTCAGGAGGGTTTCCACTGGTAGTGCAAGTTCACT 1427
Query 1332 CTTGGGAGCATCTAAAGAACTAAGACGTGATGCTTTTGT--TGATTCCCCGAGGT-C--C 1386
|||||| || ||| |||| ||| | |||| |||| | ||||||||| |||| | |
Sbjct 1428 TTTGGGAACAACTAGAGAAAAAAGGCTTGAT--TTTTCTAATGATTCCCCAAGGTCCAAC 1485
Query 1387 ---GGAAGCTACAAGAAAATGGAAGATGTCTCATATACAG--AG-AA-T--AAT--AA-T 1434
|| |||| || ||||||||||||| | ||||| ||| | || | | ||
Sbjct 1486 AATGGTAGCTTCAGGAAAATGGAAGATCCCCCATATGCAGCTGGTAATTCCTTTGCAAGG 1545
Query 1435 GCTAAAGCCGACTCATCGGAAATAGGAG---ATGACATGAGTGATAGAGTTTATACCATT 1491
| ||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1546 GATAAGGGTGACTCATCGGAAATAGGAGATAATGACATGAATGATAGAGTTTATACCATT 1605
Query 1492 GATTCTGTCCATCACAGCAGTGTGTCTCATAGTGGTGGTGTAACTGAGCAGAAGCTTGAG 1551
|| ||||||||| || |||||| |||||||||||| || ||||||| ||| || ||
Sbjct 1606 GACTCTGTCCAT--CA-CAGTGTATCTCATAGTGGTACTG---CTGAGCAAAAGTTTAAG 1659
Query 1552 GATGGCACTTCTGATGGCAATGTGGTTTTC-CCGAGAG--A-A-C--A-CA--CGGATCT 1601
||| |||| ||||||| ||| | || ||||||| | | | | || |||||||
Sbjct 1660 AATGACACTGCTGATGGTTATG-CAATGTCTCCGAGAGAAATATCGAATCAGCCGGATCT 1718
Query 1602 TGGTGATCCTGATATAACGAAACTCTACATGAGGCTTCAAGCACTGGAGGCTGACAGGGA 1661
|||||||||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1719 TGGTGATCCTGAAATATCGAAACTTTACATGAGACTTCAAGCACTAGAGGCTGACAGGGA 1778
Query 1662 ATCAATGAAACATGCGCTTCTCTCTATGAGGACTGA-AAAGGCTCAAATGGTACTGTTGA 1720
|||||||| ||| ||| || | || ||||||||||| ||| || || ||||| |||||||
Sbjct 1779 ATCAATGAGACAGGCGATTATGTCGATGAGGACTGAGAAA-GCACAGATGGTTCTGTTGA 1837
Query 1721 AAGAAATTGCTCAACATTTGTCAAAGGAAGTTGTCCCTCAACGGAGATTGCCTCTACGTA 1780
|||||||||| |||||| |||||||||| |||||||| |||| ||||||||||| || |
Sbjct 1838 AAGAAATTGCCCAACATCTGTCAAAGGATGTTGTCCCAGAACGTAGATTGCCTCTGCGGA 1897
Query 1781 AAGCATCTATTGCTGG-GCCATT-GACTTTCACGCCGGTCTTTAAGTGGATCACATCTTT 1838
|| |||||||| ||| | |||| || |||| | |||||||||||||||||||||||
Sbjct 1898 AAACATCTATTATTGGAG-CATTCAAC-TTCATATCTGTCTTTAAGTGGATCACATCTTT 1955
Query 1839 TGTTTCCTGGAAAAGAAAGGCTCGTCGAAGCAAATACATGTTTGGAATGTCA-GGAAACA 1897
||||| ||||| |||||||||||||||||||||||||||| || | || || ||||
Sbjct 1956 TGTTTTCTGGAGAAGAAAGGCTCGTCGAAGCAAATACATGAACGGGGTA-CAAGGGAACA 2014
Query 1898 ACATCGGCTTGCAAATGCTTCTAGAAAA-AGTCCCTCGG-TCACGAAAATGGCGATGTCT 1955
|||| || |||||||||||||||||||| | ||| ||| | ||| ||||| |||||||
Sbjct 2015 ACATGGGATTGCAAATGCTTCTAGAAAAGACTCC-TCGAAT-ACGGCAATGGAGATGTCT 2072
Query 1956 -T-AGGAGCACGCAAGTGTGAAA 1976
| | ||||| |||||||||||
Sbjct 2073 CTCA--AGCACACAAGTGTGAAA 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113051627340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5