BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478533
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11890.2 | Symbols: | Sterile alpha motif (SAM) domain-cont... 808 0.0
AT3G11860.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 453 2e-126
> AT3G11890.2 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr3:3755542-3757775 FORWARD LENGTH=1815
Length=1815
Score = 808 bits (437), Expect = 0.0
Identities = 492/519 (95%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 954 GAAGCTAGTCGTGTTCACACTGTGGAACCTGAGGCTTATCCTGATTTCACCTCAGTAGAC 1013
||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1155 GAAACTAGTCGTGTTCAAACTGTGGAACCTGAGGCCTGTCCTGATTTCACCTCAGTAGAC 1214
Query 1014 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1274
Query 1074 TCACTTCAAGATTGTAG-AATGAATCAGGATAGAAGAGTGGAGGTTCACAGGAGACGTGC 1132
||||| ||||| |||| || |||||||||||||||||||||| | |||||||| |||||
Sbjct 1275 TCACTGCAAGAAAGTAGGAA-GAATCAGGATAGAAGAGTGGAGATCCACAGGAGGCGTGC 1333
Query 1133 GGGTCACAAGCCCATAAGGTTTCCTAGAGTGATGTGCAGCTCTGTAGTTATTGATAATGA 1192
|||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 1334 GGGTCACAAGCCCATAAGGTTTCCAAGAGTGATGTGTAGCTCTGTTGTTATGGATAATGA 1393
Query 1193 GAAGCTGAGAGTGTTGAATCTAGAGAAGAAGGTTGAGAAAGCGGGTGGGTTGCACGAATG 1252
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 1394 GAAGCTGAGAGTGTTGAATCTGGAGAAGAAGGTTGAGAAAGCGGGAGGGTTGAACGAATG 1453
Query 1253 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAAGATGAG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1454 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAGGATGAG 1513
Query 1313 TAAGTTTCAGATGGCGAATTTGACCATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1372
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1514 TAAGTTTCAGATGGCGAATTTGACAATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1573
Query 1373 TGGGCCAAGAAGAAAGCTTATACATGCAATTGGTTGTGTCTATCACCCACATTGTCTACG 1432
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1574 TGGGCCAAGAAGAAAGCTTATACATGCAATAGGTTGTGTCTATCACCCACATTGTCTACG 1633
Query 1433 TACTTCCTTTAACTGACAACTATCTATGAAAGTTTAGTT 1471
| |||||||||||||| |||||||| | | |||||||||
Sbjct 1634 TGCTTCCTTTAACTGAGAACTATCTGTTAGAGTTTAGTT 1672
Score = 429 bits (232), Expect = 4e-119
Identities = 292/320 (91%), Gaps = 8/320 (3%)
Strand=Plus/Plus
Query 1 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAACTTGTGATAAAGGTTATAATGGCGAAGC 60
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 21 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAAC---T--CAAAGGTTACAATGGCGAAGC 75
Query 61 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTAGGTTTTGATGGAG 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 76 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTGGGTTTTGATGGAG 135
Query 121 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCATTGTTTTGCCTTCTCTTC 180
||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||
Sbjct 136 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAAAATCTTCATTGTCTTGCCTTCTCTTC 195
Query 181 CACTACCTGAACAACATC-T--CACTATGGAGAAACCTGCAATAACTTCTCAATTAGAAG 237
|||| ||| ||||||| | | |||| ||||||||||||||||| || ||||||||||||
Sbjct 196 CACTTCCTCAACAACAGCATTTCACTTTGGAGAAACCTGCAATATCTCCTCAATTAGAAG 255
Query 238 CTGAGTTAAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTTTCTTCACACTGTGGTAC 297
||| ||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |
Sbjct 256 CTGGGTTTAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTTTGTTCACACTGTGGTGC 315
Query 298 CTGCTCTTCCTCTGCCTGAA 317
|| |||||||||||||||||
Sbjct 316 CTTCTCTTCCTCTGCCTGAA 335
Score = 235 bits (127), Expect = 8e-61
Identities = 164/182 (90%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804
|||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 976 CGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAAT 1035
Query 805 CACAAGCTGAGTTAAGAGCGGAT-ACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCT 863
||||||||||| ||||| | | | || | ||||||||| | ||||||||||| | |||||
Sbjct 1036 CACAAGCTGAGGTAAGAAC-GTTGACACACAAAGCTACCCATGTTCACACAGCGATGCCT 1094
Query 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1095 TCCCTTTCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCGCAAGCT 1154
Query 924 GA 925
||
Sbjct 1155 GA 1156
Score = 233 bits (126), Expect = 3e-60
Identities = 166/185 (90%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 862 CGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAAT 921
Query 805 CACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGC 861
|||||||||||||||||||| | |||||||||||||||||||||||| ||| | | | |
Sbjct 922 CACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATAC 981
Query 862 CTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAG 921
|||| ||||||||| ||||||||| || | | | |||||| ||||||||||||||||||
Sbjct 982 CTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAATCACAAG 1041
Query 922 CTGAG 926
|||||
Sbjct 1042 CTGAG 1046
Score = 224 bits (121), Expect = 2e-57
Identities = 168/190 (88%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 748 TGCCTTCTCTTCCTGTACCTGAACAT-TATAGTATACAGAAGCCTTCAACTTCTCAATCA 806
|||||||||||||||||||||||| | | || | | ||||||||| ||||||||||||||
Sbjct 751 TGCCTTCTCTTCCTGTACCTGAAC-TATGTACTTTGCAGAAGCCTGCAACTTCTCAATCA 809
Query 807 CAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGCCT 863
|||||||||||||||||| |||||||||||||||||||||||||| ||| | | |||||
Sbjct 810 CAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATGCCT 869
Query 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923
|| ||||||||| ||||||||| || | | ||||||||| ||||||||||||||||||||
Sbjct 870 TCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAATCACAAGCT 929
Query 924 GAGCTGAGAG 933
||| | ||||
Sbjct 930 GAGTTAAGAG 939
Score = 128 bits (69), Expect = 1e-28
Identities = 150/186 (81%), Gaps = 18/186 (10%)
Strand=Plus/Plus
Query 751 CTTCTCTTCC-TGTACCTGAACATTATAG-TATACAGAAGCCTTCAACTTCTCAATCACA 808
|||||||||| | ||||| |||| | | | | | |||||||| ||||||||||||||||
Sbjct 655 CTTCTCTTCCAT-TACCTCAACACT-TCGTTTTGCAGAAGCCCGCAACTTCTCAATCACA 712
Query 809 AGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCTTCCCT 868
||| | | | | | || || ||| |||||||| |||||||| | ||||||| ||
Sbjct 713 AGC-G-G---ATA-C----ACACG-AAA-CTACTCTTCTTCACACAATACTGCCTTCTCT 760
Query 869 TCCTGTAACTGAACAT-TGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGC 927
||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 761 TCCTGTACCTGAAC-TATGTACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGT 819
Query 928 TGAGAG 933
| ||||
Sbjct 820 TAAGAG 825
Score = 128 bits (69), Expect = 1e-28
Identities = 148/183 (81%), Gaps = 17/183 (9%)
Strand=Plus/Plus
Query 476 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCGGA-T-ACG--C-A---CG---AAA-C 523
||||||||||||||||||||||||||||||||| || | | | | | || ||| |
Sbjct 782 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGC 841
Query 524 TACTCTTCTTCA-G-A-CAGTGATACCTTCTCCCCCTGTACCTGACCATTACAGTCTGCA 580
||||||| |||| | | ||| ||| ||||||| ||||||||||| ||||||||||| ||
Sbjct 842 TACTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACA 901
Query 581 GAAGCCTGCAGCTTCT-ATATCACAATCTGAGTTAAGAATGGAGATAAGCAAAGCTACTC 639
||||||| || ||||| | ||||||| ||||||||||| | ||| ||||||||||||
Sbjct 902 GAAGCCTTCAACTTCTCA-ATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTC 960
Query 640 TTG 642
|||
Sbjct 961 TTG 963
Score = 124 bits (67), Expect = 2e-27
Identities = 94/106 (89%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701
||||| |||||||| |||||||||||||||||||| || || || | |||||||| ||||
Sbjct 790 AGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AATACGCGCAAAGCTACTCTT 848
Query 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744
|||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 849 GTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACA 894
Score = 119 bits (64), Expect = 9e-26
Identities = 93/106 (88%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701
||||| |||||||| |||||||||||||||||||| || || || | |||||||| ||||
Sbjct 904 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AAGACGCGCAAAGCTACTCTT 962
Query 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744
|||||| | ||| ||| ||||||||||||||||||||||||||||
Sbjct 963 GTTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACA 1008
> AT3G11860.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Sterile alpha motif (SAM) domain-containing protein
(TAIR:AT3G11890.2); Has 52 Blast hits to 14 proteins in 3 species:
Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants
- 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:3744816-3746850 FORWARD LENGTH=759
Length=759
Score = 453 bits (245), Expect = 2e-126
Identities = 305/334 (91%), Gaps = 3/334 (1%)
Strand=Plus/Plus
Query 68 TAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTAGGTTTTGATGGAGAAGAAGA 127
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 99 TAGACAGTTGGAACTGAGCAAGGCTGGTCCTTCCAAGTTAGGATTTGATGGAGAAGAAGA 158
Query 128 CGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCATTGTTTTGCCTTCTCTTCCACTACC 187
|||||||||||||||||||||||||||| || ||||||| | ||||||||||||||| ||
Sbjct 159 CGCTTGGGTCTTTGTTAAAAAGCAGAGACTCTTCATTGTCTCGCCTTCTCTTCCACTTCC 218
Query 188 TGAAC-A-A-CATCTCACTATGGAGAAACCTGCAATAACTTCTCAATTAGAAGCTGAGTT 244
| ||| | | ||| ||||| ||||||||||||||||| || ||||||||||||||| |||
Sbjct 219 TCAACAACAGCATTTCACTTTGGAGAAACCTGCAATATCTCCTCAATTAGAAGCTGGGTT 278
Query 245 AAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTTTCTTCACACTGTGGTACCTGCTCT 304
|||||||||||||||| ||||||||| ||||| ||| ||||||||||||| ||| ||||
Sbjct 279 TAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTTTGTTCACACTGTGGTGCCTTCTCT 338
Query 305 TCCTCTGCCTGAACATTTCATTATGCACAAGCCTGAAAATTCTGAGTCTCAAGCTGAGTT 364
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||
Sbjct 339 TCCTCTGCCTGAACATTTCATTAGGCATAAGCCTGAAACTTCTGAGTCTCAAGCTGAATT 398
Query 365 AAGAGACGTTCTTGCGGATACGCACAAAACTACT 398
||||||||||||||||||| ||||||||||||||
Sbjct 399 AAGAGACGTTCTTGCGGATCCGCACAAAACTACT 432
Score = 100 bits (54), Expect = 3e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 679 CGGAAACACACAAAGCTATTCTTGTTCACACAGTGATGCCTTCTCTTCCTGTACCTGAAC 738
|||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 584 CGGATACACGCAAAGCTACTCTTGTTCACACGGTGATGCCTTCTCTTCCTGTACCTGAAC 643
Query 739 ATTACA 744
||||||
Sbjct 644 ATTACA 649
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 746 GATGCCTTCTCTTCCTGTACCTGAACATTA 775
||||||||||||||||||||||||||||||
Sbjct 618 GATGCCTTCTCTTCCTGTACCTGAACATTA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5