BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478533 Length=1471 Score E Sequences producing significant alignments: (Bits) Value AT3G11890.2 | Symbols: | Sterile alpha motif (SAM) domain-cont... 808 0.0 AT3G11860.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 453 2e-126 > AT3G11890.2 | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:3755542-3757775 FORWARD LENGTH=1815 Length=1815 Score = 808 bits (437), Expect = 0.0 Identities = 492/519 (95%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 954 GAAGCTAGTCGTGTTCACACTGTGGAACCTGAGGCTTATCCTGATTTCACCTCAGTAGAC 1013 ||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| Sbjct 1155 GAAACTAGTCGTGTTCAAACTGTGGAACCTGAGGCCTGTCCTGATTTCACCTCAGTAGAC 1214 Query 1014 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 AAACCGGAGATAGTTATGAGTCGCAGTCTCACAACCAGGAAAGCTCCAGCACCAAAGAGA 1274 Query 1074 TCACTTCAAGATTGTAG-AATGAATCAGGATAGAAGAGTGGAGGTTCACAGGAGACGTGC 1132 ||||| ||||| |||| || |||||||||||||||||||||| | |||||||| ||||| Sbjct 1275 TCACTGCAAGAAAGTAGGAA-GAATCAGGATAGAAGAGTGGAGATCCACAGGAGGCGTGC 1333 Query 1133 GGGTCACAAGCCCATAAGGTTTCCTAGAGTGATGTGCAGCTCTGTAGTTATTGATAATGA 1192 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 1334 GGGTCACAAGCCCATAAGGTTTCCAAGAGTGATGTGTAGCTCTGTTGTTATGGATAATGA 1393 Query 1193 GAAGCTGAGAGTGTTGAATCTAGAGAAGAAGGTTGAGAAAGCGGGTGGGTTGCACGAATG 1252 ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| Sbjct 1394 GAAGCTGAGAGTGTTGAATCTGGAGAAGAAGGTTGAGAAAGCGGGAGGGTTGAACGAATG 1453 Query 1253 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAAGATGAG 1312 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1454 GGTTGGATCTATAGGATTAGGGAGAGAGTTTGAGAGGATGTTGAGAGGACAGAGGATGAG 1513 Query 1313 TAAGTTTCAGATGGCGAATTTGACCATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1372 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1514 TAAGTTTCAGATGGCGAATTTGACAATGGAGAAGCTTAAGCAGATGGGTGCTTTAGCCGT 1573 Query 1373 TGGGCCAAGAAGAAAGCTTATACATGCAATTGGTTGTGTCTATCACCCACATTGTCTACG 1432 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1574 TGGGCCAAGAAGAAAGCTTATACATGCAATAGGTTGTGTCTATCACCCACATTGTCTACG 1633 Query 1433 TACTTCCTTTAACTGACAACTATCTATGAAAGTTTAGTT 1471 | |||||||||||||| |||||||| | | ||||||||| Sbjct 1634 TGCTTCCTTTAACTGAGAACTATCTGTTAGAGTTTAGTT 1672 Score = 429 bits (232), Expect = 4e-119 Identities = 292/320 (91%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 1 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAACTTGTGATAAAGGTTATAATGGCGAAGC 60 ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 21 GAAAGTCATCGTCACTCCCAGAAAGAAAGAAAC---T--CAAAGGTTACAATGGCGAAGC 75 Query 61 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTAGGTTTTGATGGAG 120 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 76 TAAGGCCTAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTGGGTTTTGATGGAG 135 Query 121 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCATTGTTTTGCCTTCTCTTC 180 ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| Sbjct 136 AAGAAGACGCTTGGGTCTTTGTTAAAAAGCAGAAAATCTTCATTGTCTTGCCTTCTCTTC 195 Query 181 CACTACCTGAACAACATC-T--CACTATGGAGAAACCTGCAATAACTTCTCAATTAGAAG 237 |||| ||| ||||||| | | |||| ||||||||||||||||| || |||||||||||| Sbjct 196 CACTTCCTCAACAACAGCATTTCACTTTGGAGAAACCTGCAATATCTCCTCAATTAGAAG 255 Query 238 CTGAGTTAAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTTTCTTCACACTGTGGTAC 297 ||| ||| |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| | Sbjct 256 CTGGGTTTAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTTTGTTCACACTGTGGTGC 315 Query 298 CTGCTCTTCCTCTGCCTGAA 317 || ||||||||||||||||| Sbjct 316 CTTCTCTTCCTCTGCCTGAA 335 Score = 235 bits (127), Expect = 8e-61 Identities = 164/182 (90%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804 |||| |||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| Sbjct 976 CGATACCTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAAT 1035 Query 805 CACAAGCTGAGTTAAGAGCGGAT-ACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCT 863 ||||||||||| ||||| | | | || | ||||||||| | ||||||||||| | ||||| Sbjct 1036 CACAAGCTGAGGTAAGAAC-GTTGACACACAAAGCTACCCATGTTCACACAGCGATGCCT 1094 Query 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1095 TCCCTTTCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCGCAAGCT 1154 Query 924 GA 925 || Sbjct 1155 GA 1156 Score = 233 bits (126), Expect = 3e-60 Identities = 166/185 (90%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 745 CGATGCCTTCTCTTCCTGTACCTGAACATTATAGTATACAGAAGCCTTCAACTTCTCAAT 804 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 862 CGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAAT 921 Query 805 CACAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGC 861 |||||||||||||||||||| | |||||||||||||||||||||||| ||| | | | | Sbjct 922 CACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATAC 981 Query 862 CTTCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAG 921 |||| ||||||||| ||||||||| || | | | |||||| |||||||||||||||||| Sbjct 982 CTTCTCTTCCTGTACCTGAACATTACAGTCTACTCAAGCCTTCAACTTCTCAATCACAAG 1041 Query 922 CTGAG 926 ||||| Sbjct 1042 CTGAG 1046 Score = 224 bits (121), Expect = 2e-57 Identities = 168/190 (88%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 748 TGCCTTCTCTTCCTGTACCTGAACAT-TATAGTATACAGAAGCCTTCAACTTCTCAATCA 806 |||||||||||||||||||||||| | | || | | ||||||||| |||||||||||||| Sbjct 751 TGCCTTCTCTTCCTGTACCTGAAC-TATGTACTTTGCAGAAGCCTGCAACTTCTCAATCA 809 Query 807 CAAGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGT-G-G-TGCCT 863 |||||||||||||||||| |||||||||||||||||||||||||| ||| | | ||||| Sbjct 810 CAAGCTGAGTTAAGAGCGAATACGCGCAAAGCTACTCTTGTTCACGCAGCAGCGATGCCT 869 Query 864 TCCCTTCCTGTAACTGAACATTGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCT 923 || ||||||||| ||||||||| || | | ||||||||| |||||||||||||||||||| Sbjct 870 TCTCTTCCTGTACCTGAACATTACAGTCTACAGAAGCCTTCAACTTCTCAATCACAAGCT 929 Query 924 GAGCTGAGAG 933 ||| | |||| Sbjct 930 GAGTTAAGAG 939 Score = 128 bits (69), Expect = 1e-28 Identities = 150/186 (81%), Gaps = 18/186 (10%) Strand=Plus/Plus Query 751 CTTCTCTTCC-TGTACCTGAACATTATAG-TATACAGAAGCCTTCAACTTCTCAATCACA 808 |||||||||| | ||||| |||| | | | | | |||||||| |||||||||||||||| Sbjct 655 CTTCTCTTCCAT-TACCTCAACACT-TCGTTTTGCAGAAGCCCGCAACTTCTCAATCACA 712 Query 809 AGCTGAGTTAAGAGCGGATACGCGCAAAGCTACTCTTGTTCACACAGTGGTGCCTTCCCT 868 ||| | | | | | || || ||| |||||||| |||||||| | ||||||| || Sbjct 713 AGC-G-G---ATA-C----ACACG-AAA-CTACTCTTCTTCACACAATACTGCCTTCTCT 760 Query 869 TCCTGTAACTGAACAT-TGCACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGC 927 ||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||| Sbjct 761 TCCTGTACCTGAAC-TATGTACTTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGT 819 Query 928 TGAGAG 933 | |||| Sbjct 820 TAAGAG 825 Score = 128 bits (69), Expect = 1e-28 Identities = 148/183 (81%), Gaps = 17/183 (9%) Strand=Plus/Plus Query 476 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCGGA-T-ACG--C-A---CG---AAA-C 523 ||||||||||||||||||||||||||||||||| || | | | | | || ||| | Sbjct 782 TTTGCAGAAGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCGAATACGCGCAAAGC 841 Query 524 TACTCTTCTTCA-G-A-CAGTGATACCTTCTCCCCCTGTACCTGACCATTACAGTCTGCA 580 ||||||| |||| | | ||| ||| ||||||| ||||||||||| ||||||||||| || Sbjct 842 TACTCTTGTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACAGTCTACA 901 Query 581 GAAGCCTGCAGCTTCT-ATATCACAATCTGAGTTAAGAATGGAGATAAGCAAAGCTACTC 639 ||||||| || ||||| | ||||||| ||||||||||| | ||| |||||||||||| Sbjct 902 GAAGCCTTCAACTTCTCA-ATCACAAGCTGAGTTAAGAGCGAAGACGCGCAAAGCTACTC 960 Query 640 TTG 642 ||| Sbjct 961 TTG 963 Score = 124 bits (67), Expect = 2e-27 Identities = 94/106 (89%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701 ||||| |||||||| |||||||||||||||||||| || || || | |||||||| |||| Sbjct 790 AGCCTGCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AATACGCGCAAAGCTACTCTT 848 Query 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744 |||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 849 GTTCACGCAGCAGCGATGCCTTCTCTTCCTGTACCTGAACATTACA 894 Score = 119 bits (64), Expect = 9e-26 Identities = 93/106 (88%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 643 AGCCTACAACTTCTAAATCACAAGCTGAGTTAAGAACGGAA-ACACACAAAGCTATTCTT 701 ||||| |||||||| |||||||||||||||||||| || || || | |||||||| |||| Sbjct 904 AGCCTTCAACTTCTCAATCACAAGCTGAGTTAAGAGCG-AAGACGCGCAAAGCTACTCTT 962 Query 702 GTTCAC--A-CAGTGATGCCTTCTCTTCCTGTACCTGAACATTACA 744 |||||| | ||| ||| |||||||||||||||||||||||||||| Sbjct 963 GTTCACGCAGCAGCGATACCTTCTCTTCCTGTACCTGAACATTACA 1008 > AT3G11860.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G11890.2); Has 52 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3744816-3746850 FORWARD LENGTH=759 Length=759 Score = 453 bits (245), Expect = 2e-126 Identities = 305/334 (91%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 68 TAGACAGTTGGAACTGAGCAAGACTGTTCCTTCCAAGTTAGGTTTTGATGGAGAAGAAGA 127 |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 99 TAGACAGTTGGAACTGAGCAAGGCTGGTCCTTCCAAGTTAGGATTTGATGGAGAAGAAGA 158 Query 128 CGCTTGGGTCTTTGTTAAAAAGCAGAGAATCATCATTGTTTTGCCTTCTCTTCCACTACC 187 |||||||||||||||||||||||||||| || ||||||| | ||||||||||||||| || Sbjct 159 CGCTTGGGTCTTTGTTAAAAAGCAGAGACTCTTCATTGTCTCGCCTTCTCTTCCACTTCC 218 Query 188 TGAAC-A-A-CATCTCACTATGGAGAAACCTGCAATAACTTCTCAATTAGAAGCTGAGTT 244 | ||| | | ||| ||||| ||||||||||||||||| || ||||||||||||||| ||| Sbjct 219 TCAACAACAGCATTTCACTTTGGAGAAACCTGCAATATCTCCTCAATTAGAAGCTGGGTT 278 Query 245 AAGAGAAAGCATGGAGGATACGCAAGAAAGTACTTTTCTTCACACTGTGGTACCTGCTCT 304 |||||||||||||||| ||||||||| ||||| ||| ||||||||||||| ||| |||| Sbjct 279 TAGAGAAAGCATGGAGGTTACGCAAGATAGTACCTTTGTTCACACTGTGGTGCCTTCTCT 338 Query 305 TCCTCTGCCTGAACATTTCATTATGCACAAGCCTGAAAATTCTGAGTCTCAAGCTGAGTT 364 ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| || Sbjct 339 TCCTCTGCCTGAACATTTCATTAGGCATAAGCCTGAAACTTCTGAGTCTCAAGCTGAATT 398 Query 365 AAGAGACGTTCTTGCGGATACGCACAAAACTACT 398 ||||||||||||||||||| |||||||||||||| Sbjct 399 AAGAGACGTTCTTGCGGATCCGCACAAAACTACT 432 Score = 100 bits (54), Expect = 3e-20 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 679 CGGAAACACACAAAGCTATTCTTGTTCACACAGTGATGCCTTCTCTTCCTGTACCTGAAC 738 |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 584 CGGATACACGCAAAGCTACTCTTGTTCACACGGTGATGCCTTCTCTTCCTGTACCTGAAC 643 Query 739 ATTACA 744 |||||| Sbjct 644 ATTACA 649 Score = 56.5 bits (30), Expect = 7e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 746 GATGCCTTCTCTTCCTGTACCTGAACATTA 775 |||||||||||||||||||||||||||||| Sbjct 618 GATGCCTTCTCTTCCTGTACCTGAACATTA 647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72539787525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5