BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478543
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein... 1339 0.0
AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | ... 769 0.0
> AT3G11940.1 | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein
5A | chr3:3777895-3779467 REVERSE LENGTH=1017
Length=1017
Score = 1339 bits (725), Expect = 0.0
Identities = 761/778 (98%), Gaps = 3/778 (0%)
Strand=Plus/Plus
Query 63 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAGG 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 109 CAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAG 168
Query 123 TCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTGTTG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTGTTG 228
Query 183 ACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAGAT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAGAT 288
Query 243 ACTCTGTGAAGAGATTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTC 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 289 ACTCTGTGAAGAGATTCAGGAAGGCTCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTC 348
Query 303 TCATGATGCATGGGAGGAACAACGGTAAGAAATTGATGGCAGTGAGGATCGTCAAGCATG 362
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 349 TCATGATGCACGGGAGGAACAACGGTAAGAAATTGATGGCTGTCAGGATCGTCAAGCACG 408
Query 363 CCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATCCAGGTCATCATTGACGCCA 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 CCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATTCAGGTCATCATTGACGCCA 468
Query 423 TTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGA 528
Query 483 GACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAAGCTATCTTCTTGATTACCA 542
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 529 GACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTCTTGATTACCA 588
Query 543 CTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATG 648
Query 603 AATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATGAGA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATGAGA 708
Query 663 TTGAAAGAGTTGCCAAGGCCAATCGTTAAGGATTTTCCTTTTGCCTTGAGGGTTACAATC 722
||||||||||||||||||| |||||||||||||||||| |||||| || | |||||||||
Sbjct 709 TTGAAAGAGTTGCCAAGGCTAATCGTTAAGGATTTTCCCTTTGCCCTGTGCGTTACAATC 768
Query 723 T--TATCAATGAGTTTAATGTTTTATCTTCATTTAGATTGAAATATGTATCTCAGATGTT 780
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCGTATCAATGAGTTTAATGTTTTATCTTCATTTAGATTGAAATATGTATCTCAGATGTT 828
Query 781 TTGCTCTTTTGTTTTATGAAGTTTATTTCGTCCGAACTACTTTGAATAGATAAATTTT 838
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 829 T-GCTCTTTTGTTTTATGAAGTTTATTTCGTCTGAACTACTTTGAATAGATAAATTTT 885
> AT2G37270.1 | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B
| chr2:15647677-15649221 REVERSE LENGTH=930
Length=930
Score = 769 bits (416), Expect = 0.0
Identities = 642/750 (86%), Gaps = 20/750 (3%)
Strand=Plus/Plus
Query 61 TTCAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGC-GCTCACTAACG 119
||||| ||||||| || ||||||| | |||||||||||||| || || ||| || || |
Sbjct 94 TTCAGTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACA-GCAGCTTACCAATG 152
Query 120 AGGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTG 179
|||| |||||||||||||| |||| || ||| |||||| |||| || || || |||||||
Sbjct 153 AGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGTTACGGATATTAGTCTTG 212
Query 180 TTGACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAA 239
| ||||||||||| |||||| || | || || || || ||||||||||| || ||||||
Sbjct 213 TGGACTACATTGGTGTTCAGCCATCGAAGCACGCAACTTTTGTTCCCCATACTGCTGGAC 272
Query 240 GATACTCTGTGAAGAGATTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACT 299
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 273 GATACTCTGTGAAGAGGTTCAGAAAGGCGCAGTGCCCAATTGTTGAGAGGCTCACTAACT 332
Query 300 CTCTCATGATGCATGGGAGGAACAACGGTAAGAAATTGATGGCAGTGAGGATCGTCAAGC 359
||||||||||||| || || ||||| |||||||| |||||||| || |||||||||||||
Sbjct 333 CTCTCATGATGCACGGAAGAAACAATGGTAAGAAGTTGATGGCTGTCAGGATCGTCAAGC 392
Query 360 ATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATCCAGGTCATCATTGACG 419
|||||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct 393 ATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATG 452
Query 420 CCATTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTA 479
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 453 CCATTGTTAACAGTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTA 512
Query 480 GGAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAAGCTATCTTCTTGATTA 539
|||| || ||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 513 GGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCGATCTTCTTGCTTA 572
Query 540 CCACTGGTGCTCGTGAAGCTGC-TTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCT 598
| |||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||
Sbjct 573 CAACTGGTGCACGTGAAGCTGCCTTT-AGAAACATCAAGACAATCGCTGAGTGCCTTGCT 631
Query 599 GATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGAT 658
|||||| | ||||| || || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 632 GATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCATCAAGAAGAAAGAT 691
Query 659 GAGATTGAAAGAGTTGCCAAGGCCAATCGTTAAGG-ATTTTCCTTTTGCCT-TGAGGGTT 716
|||||||| |||||||| ||||||||||||||||| || | ||||| ||| | || ||
Sbjct 692 GAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTCCCTTT--CCTCTAAGT-TT 748
Query 717 ACAATCTTATCAATGAGTTTAATGTTTTATCTTC-ATTTAGATT-GAAATATGTATCTCA 774
|| | | ||||| |||||| ||| || | ||| ||| || || | | ||||| | |||
Sbjct 749 GCATTAT-ATCAAAGAGTTTT-TGTGTTGT-TTCCATT-AGCTTTGGA-TATGT-T-TCA 801
Query 775 GATGTTTTGCTCTTTTGTTTTATGAAGTTT 804
|||| | | |||| | ||| ||||| |||
Sbjct 802 GATGATCT-CTCTATC-TTTAATGAAATTT 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5