BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478555
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12030.1 | Symbols: | Protein of unknown function DUF106, t... 1016 0.0
AT5G06660.1 | Symbols: | Protein of unknown function DUF106, t... 671 0.0
> AT3G12030.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr3:3834361-3835075 REVERSE LENGTH=715
Length=715
Score = 1016 bits (550), Expect = 0.0
Identities = 617/649 (95%), Gaps = 5/649 (1%)
Strand=Plus/Plus
Query 1 TTTGAGCAACAATGGCGACTACGATACCGCTCTTCGCTTCTTTCAAATACGCCGATAGCT 60
|||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 10 TTTGCGCAACAATGGCGACTACGATTCCACTCTTCGCCTCTTTCAAATACGCCGATAGCT 69
Query 61 TAACCGTCGTCGGAATCTCCATCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCT 120
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 70 TAACGGTCGTAGGAATCTCCTTCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCT 129
Query 121 TAATCTACCGCACCAGCTCCTACAAATCCTTGAAATACTCCATTGACAAAGCCGCGAAGA 180
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 130 TAATCTACCGTACCAGCTCATACAAATCCTTGAAATACTCCATTGACAAGGCCACGAAGA 189
Query 181 AACTCGAGACGATGAAGACAGAGAATCCATCGTCGAAGCTATCCATAAAGAAATCAAAGA 240
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 190 AACTCGAGACAATGAAGACAGAGAATCCATCGTCAAAGCTATCCATAAAGAAATCAAAGA 249
Query 241 CAAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CGAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTCT 309
Query 301 TCAAGTTCAAATCCGGCGCCGTTGTGGCTCTGGTTCTCTTCGTCGTCTTCGGATTGCTCA 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 310 TCAAGTTCAAATCCGGCGCCGTTGTGGCACTGGTTCTCTTCGTCGTCTTCGGATTGCTCA 369
Query 361 ATTCACTCTTCGAAGGTAAAGTAGTCGCGAAGCTTCCGTTCCATCCGATAACGATAGTGA 420
||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 370 ATTCACTATTCGAAGGTAAAGTCGTCGCGAAGCTTCCTTTCCATCCGATCACGATAGTGA 429
Query 421 AGAAGATGAGTCACAGGGGATTGAAAGGCGATGATCCGACGGATTGCTCAATGGCTTTTC 480
|||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||
Sbjct 430 AGAAGATGAGTCACAGGGGACTGAAAGGTGATGATCCGACGGATTGTTCCATGGCTTTTC 489
Query 481 TTTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTTTCTC 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TCTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTTTCTC 549
Query 541 CACCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACT 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CGCCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCAACT 609
Query 601 GAATCACTCCTTTTGA--ttttttttttt-GTTTCTGTTGAAATTTTTG 646
|| |||||||||| || ||||||||||| |||| |||||| |||||||
Sbjct 610 GA-TCACTCCTTT-GAGGTTTTTTTTTTTTGTTTTTGTTGAGATTTTTG 656
> AT5G06660.1 | Symbols: | Protein of unknown function DUF106,
transmembrane | chr5:2046810-2047794 FORWARD LENGTH=985
Length=985
Score = 671 bits (363), Expect = 0.0
Identities = 529/609 (87%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 3 TGAGCAACAATGGCGACTACGATACCGCTCTTCGCTTCTTTCAAATACGCCGATAGCT-T 61
|||||||||||||| || ||||||| |||||||| |||||||| || |||||||| | |
Sbjct 45 TGAGCAACAATGGCCACCGCGATACCTCTCTTCGCCTCTTTCAAGTATGCCGATAG-TCT 103
Query 62 AACCGTCGTCGGAATCTCCATCTGCACCGCGTTGGTCTGCGAAGCCATCTCATGGATCTT 121
|||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 104 CACCGTCGTTGGAATCTCTTTCTGCACGGCGTTGGTCTGCGAAGCAATCTCATGGATCCT 163
Query 122 AATCTACCGCACCAGCTCCTACAAATCCTTGAAATAC-TCCATTGACAAAGCCGCGAAGA 180
|||||| ||||| ||||| |||||||| ||||||| | ||||||||||||||| | ||||
Sbjct 164 AATCTATCGCACAAGCTCTTACAAATCGTTGAAAT-CTTCCATTGACAAAGCCTCTAAGA 222
Query 181 AACTCGAGACGATGAAGACAGAGAATCCATCGTCGAAGCTATCCATA-AAGAAATCAAAG 239
| || ||||||||||||||||| ||||| || ||||||||| || | |||||||| |||
Sbjct 223 AGCTTGAGACGATGAAGACAGATAATCCTTCCTCGAAGCTA-ACAAACAAGAAATCGAAG 281
Query 240 ACAAAGAAGATCGATCGCGTTGAAACCAGCTTAAAGGAATCGAGCCGAGATCTGTCACTC 299
|| |||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 282 ACGAAGAAGATAGATCGCGTTGAATCCAGCTTAAAGGAATCGAGCAGAGATCTATCACTC 341
Query 300 TTCAAGTTCAAATCCGGCGCCGTTGTGGCTCTGGTTCTCTTCGTCGTCTTCGGATTGCTC 359
|||||||| ||||| || |||||||||||| |||||||||| ||||| || |||||| |
Sbjct 342 TTCAAGTTTAAATCTGGTGCCGTTGTGGCTTTGGTTCTCTTTGTCGTGTTTGGATTGTTG 401
Query 360 AATTCACTCTTCGAAGGTAAAGTAGTCGCGAAGCTTCCGTTCCATCCGATAACGATAGTG 419
||||| || |||||||| ||||| || |||||||||||||| |||||||| ||||| |||
Sbjct 402 AATTCGCTTTTCGAAGGGAAAGTGGTAGCGAAGCTTCCGTTTCATCCGATTACGATTGTG 461
Query 420 AAGAAGATGAGTCACAGGGGATTGAAAGGCGATGA-TCCGACGGATTGCTCAATGGCTTT 478
| |||||||||||| || ||||||||||||||||| ||| || ||||| || ||||||||
Sbjct 462 AGGAAGATGAGTCATAGAGGATTGAAAGGCGATGATTCC-ACTGATTGTTCCATGGCTTT 520
Query 479 TCTTTATCTGCTGTGTTCAATTAGTATCAGAACCAATCTACAGAAATTTCTAGGGTTT-T 537
|||||||||||| ||||| |||||||| || || ||||| ||| || |||| |||||| |
Sbjct 521 TCTTTATCTGCTTTGTTCTATTAGTATAAGGACTAATCTGCAG-AAGTTCTTGGGTTTCT 579
Query 538 CTCCACCGCGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCCATGCCTGATCCTAAGACCA 597
||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 580 CTCCACCTAGAGGAGCTGCTGGTGCTGGTGGTTTGTTCCCAATGCCTGATCCAAAGACCA 639
Query 598 ACTGAATCA 606
| ||| |||
Sbjct 640 ATTGA-TCA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5