BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478556
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12040.1 | Symbols: | DNA-3-methyladenine glycosylase (MAG)... 1387 0.0
> AT3G12040.1 | Symbols: | DNA-3-methyladenine glycosylase (MAG)
| chr3:3835129-3836833 REVERSE LENGTH=1037
Length=1037
Score = 1387 bits (751), Expect = 0.0
Identities = 832/871 (96%), Gaps = 5/871 (1%)
Strand=Plus/Plus
Query 1 TTTTGATAAGTCAAATCTTTTTGCTTCGGGTTCG-ACAATGAAAACGCCGGCTCGTCGAT 59
|||||| |||||||||||||| | |||||||| | | |||||||||||||||||||||||
Sbjct 16 TTTTGAAAAGTCAAATCTTTTCGTTTCGGGTT-GTATAATGAAAACGCCGGCTCGTCGAT 74
Query 60 CGAAGCGGATTGATC---AGGAATCGGAGACCAATGTTACAACCCGAGTAGTCCTACGGA 116
|||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 75 CGAAGCGGGTTAATCAGGAGGAATCGGAGACAAATGTTACAACCCGAGTAGTCCTACGGA 134
Query 117 CACGAAAGACCAACTGTTCCAAGACTCGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 176
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 135 CACGAAAGACCAACTGTTCCAAGACACGAGCGGCTCGGGTCAGACCCGATTACCCACTGA 194
Query 177 CCCGCTCCACCTCCGAGTCCGAGATGAAGTTAATGCCTCTGGAGTTCTTTCAAATCGACG 236
||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 195 CCCGCACCACCTCCGAGTCCGAGATGAAGTTAATGCCTCCGGAGTTCTTTCAGATCGACG 254
Query 237 CGCTTGATCTTGCGCCACGTTTGCTTGGGAAGTTCCTAAGGAGAGACAATGTTGTGCTGC 296
| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
Sbjct 255 CACTTGATCTTGCGCCACGTTTGCTTGGCAAGTTCATGAGGAGAGACAATGTTGTGCTTC 314
Query 297 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GAATTACAGAGGTAGAAGCTTATAGACCAAATGATTCAGCTTGCCATGGACGATTTGGTG 374
Query 357 TTACCCCACGGACCGCACCAGTGTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 375 TTACCCCACGGACCGCACCAGTTTTTGGACCAGGAGGACATGCTTATGTTTATCTATGTT 434
Query 417 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAGGAAGGAGTTGGAGCCGCTGTTT 476
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 435 ATGGTCTTCATATGATGCTCAATATTGTTGCTGATAAAGAAGGAGTCGGAGCTGCTGTTT 494
Query 477 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGATACGGTCTTGTTCTCCTGTTTCCGGAATGGAGACTATACAGGAGCGTCGTGGCCTGA 554
Query 537 AAACCGACAAACCTGTTCTTCTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 596
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 555 AAACCGACAAACCTGTTCTTTTAAATGGACCAGGAAAGGTTGGTCAAGCGCTTGGACTCT 614
Query 597 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTTGATGGAG 656
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 615 CAACAGAGTGGTCTCATCATCCACTTTATTCTCCTGGAGGACTGGAGCTTCTGGATGGAG 674
Query 657 GAGAATATGTGGAGAAAGTAATGGTTGGCCCTCGCGTTGGGATAGATTACGCATTGCCTC 716
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 675 GAGAAGATGTGGAGAAAGTAATGGTTGGTCCTCGCGTTGGGATAGATTACGCATTGCCTG 734
Query 717 AACATGTCAATGCCTTGTGGAGATTTGCTATTGCAGAAACTCCATGGATAAGTGCTCCGA 776
||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 735 AACATGTGAATGCCTTGTGGAGATTTGCTGTTGCAGACACTCCATGGATAAGTGCTCCTA 794
Query 777 AGAACACTCTTAAGCCTCTCTAACTTCAACTCAAAACTTCTTTTTTCCTCTTCTTTGTAA 836
||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 795 AGAACACTCTTAAACCTCTCTAACTTCAACTCAAAACTCCTTTGTACCTCTTCTTTGTAA 854
Query 837 ATAGACATCTGCATGTAATATTAACTCTTTG 867
|||||||||||||||| ||||||||||||||
Sbjct 855 ATAGACATCTGCATGTCATATTAACTCTTTG 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5