BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478557
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12050.1 | Symbols: | Aha1 domain-containing protein | chr3... 2080 0.0
> AT3G12050.1 | Symbols: | Aha1 domain-containing protein | chr3:3839102-3841466
FORWARD LENGTH=1433
Length=1433
Score = 2080 bits (1126), Expect = 0.0
Identities = 1225/1272 (96%), Gaps = 9/1272 (1%)
Strand=Plus/Plus
Query 84 TCTCTTCTCAATCCGTATAGCTTAGCTTCCCTAATCCAACAACCATGGCAAAGTTCGGCG 143
|||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct 148 TCTC-TCTCAATCCGTGTAGCTTAGCTTCCCTAAT-C--CAACCATGGCAAAGTTCGGTG 203
Query 144 AAGGTGACAAGAGATGGATCGTAGAAGACAGACCTGACGGCACCAACGTCCATAACTGGC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AAGGTGACAAGAGATGGATCGTAGAAGACAGACCTGACGGCACCAACGTCCATAACTGGC 263
Query 204 ACTGGTCCGAAACCAATTGCCTTGAATGGTCTCGCAACTTCTTCACCAAACAATTCTCCG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 ACTGGTCCGAAACCAATTGCCTTGAATGGTCTCGCAACTTCTTCACCAAACAATTCTCCG 323
Query 264 GCGTTGTTATCCTCTCCGGCGAAGGTAATCTATTCATCAAGGTCAATAAGATCGAGAAAG 323
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 324 GCGTTGATATCCTCTCCGGCGAAGGTAATCTTTTCATCAAGGTCAGTAAGATCGAGAAAG 383
Query 324 TCGAAGGCGAGGCTTATGTGAATGT-ACGGAAGGGGAAGATTATCCCTGGGTACGAGCTT 382
||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 384 TCGAAGGCGAGGCTTATGTGAATGTGA-GGAAGGGGAAGATTATCCCTGGCTACGAGCTT 442
Query 383 AATGTCTCTTTATCCTGGGAAGGTGAGGCCAAAGATTCCGATGGGAAGACGCTGTTGAAA 442
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 443 AACGTCTCTTTATCTTGGGAAGGTGAGGCTAAAGATTCCGATGGGAAGACGCTTTTGAAA 502
Query 443 GCTGATGGATTGGTGGATATGCCTTATATCTCCGATGAGAATGCTGATGAAGATCCGGAG 502
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GCTGATGGATTGGTCGATATGCCTTATATCTCCGATGAGAATGCTGATGAAGATCCGGAG 562
Query 503 ATTAGGTTTTCGGTGAAGGATGAGGGACCGATTGGGAGGACTTTGAAGGAGGCGATGGTG 562
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 563 ATTAGGTTTTCGGTGAAGGATGAGGGACCGATTGGGAGGACTTTGAAGGAAGCGATGGTG 622
Query 563 AAGAAGGGGAAATCGATTATTCTGGAGAAGGTTAGGGTTTATGTGGAGGCTATGGCGAAA 622
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 623 AAGAAGGGGAAGGAGATTATTCTGGAGAAGGTTAGGGTTTATGTGGAGGCTATGGCGAGA 682
Query 623 GGAGGTCCGTGTAGGGATGAATTGGAGTCGAAGAAGGTTGCGCCGAAATCTGTAGCGGCT 682
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 683 GGAGGCCCGTGTAGGGATGAATTGGAATCGAAGAAGGTTGCGCCGAAATCGGTAGCGGCT 742
Query 683 GGATCAGCTACTGTGGCAGTGGAGAAGTCTGGTGGTGCCCCGGCGGTGTCTGCTGCTGCG 742
||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 743 GGATCAGCTACGGTGGCGGTGGAGAAGTCTGGTGCTGCCCCGGTGGTGTCTGCTGCTGCG 802
Query 743 GTGGAGACTAAGGTAGTGAAGGAGAAGAAGAAGGCGAAGACTAAGGAAGGGTTTAAGACA 802
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GTGGAGAGTAAGGTAGTTAAGGAGAAGAAGAAGGCGAAGACTAAGGAAGGGTTTAAGACA 862
Query 803 ATTACTATGACTGAGAAGTTTAATTGCAGAGCTAGGGATTTGTATGAGATTTTAATGGAT 862
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATTACTATGACCGAGAAGTTTAATTGCAGAGCTAGGGATTTGTATGAGATTTTAATGGAT 922
Query 863 GAGAATCGTTGGAAAGGTTTTACGCAGAGCAATGCTAAGATTAGTAAAGATGTGAATGGT 922
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 923 GAGAATCGTTGGAAAGGTTTTACGCAGAGTAATGCTAAGATTAGTAAAGATGTGAATGGT 982
Query 923 CCGATTAGTGTTTTTGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGAAAA 982
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 983 CCGATTAGTGTCTTTGATGGGTCTGTTACTGGAATGAATCTTGAGCTTGAAGAAGGCAAA 1042
Query 983 TTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGGTGAAG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TTGATTGTTCAGAAGTGGAGATTTGGGAGCTGGCCTGATGGTCTTGATTCAACGGTGAAG 1102
Query 1043 ATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 ATCGTTTTCGAGGAGCCTCAACCAGGAGTCACCATTGTCAATCTTACTCACACTGACGTT 1162
Query 1103 CCTGAAGAGGACAGATATGGGAATGCGACTGTGGTGGAGAACACTGAGAGAGGATGGAGA 1162
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1163 CCTGAAGAGGACAGATACGGGAATGCGACTGTGGTGGAAAACACTGAGAGAGGATGGAGA 1222
Query 1163 GATCTTATATTCCATAGGATCCGTGCAGTTTTCGGATTTGGAATATGAT-TTATGATTTT 1221
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1223 GATCTTATATTCCATAGGATCCGTGCAGTTTTCGGATTTGGAATATGAACTTATGATTTT 1282
Query 1222 GATTATCAAATAAGTTAATTATGATTTGGACCAAGAAACAATGCAAAATGTATGATTTGA 1281
|||||||||||||||| ||||||||||||||| | || |||||||||||||||||||| |
Sbjct 1283 GATTATCAAATAAGTTGATTATGATTTGGACCGATAACCAATGCAAAATGTATGATTTTA 1342
Query 1282 AAGTTTTTCACTTTTAGTTAATGCATTTCCCTTGAACTTATATA-A-TCTCTTTCTTTAG 1339
|||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1343 AAGTTTTTCAGTTTTAGTTAATGCATTTCCCTTGAACTTATATATAATCTCTTTCTTTAG 1402
Query 1340 GCCATAGGCCCT 1351
||||||||||||
Sbjct 1403 GCCATAGGCCCT 1414
Score = 86.1 bits (46), Expect = 8e-16
Identities = 55/59 (93%), Gaps = 1/59 (2%)
Strand=Plus/Plus
Query 1 aaaaaagaaaaaaaaCTGTTTCTAGAGGCTTCGTTAGCCTAATTCATTAATCTAGGTTC 59
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 12 AAAAAAAAAAAAAAAAAGTTTCTAGAGGCTTCGTTAGCCTAATTCATTAA-CTAGGTTC 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5