BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478562
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein | c... 3435 0.0
> AT3G12080.1 | Symbols: emb2738 | GTP-binding family protein |
chr3:3847792-3852138 FORWARD LENGTH=2209
Length=2209
Score = 3435 bits (1860), Expect = 0.0
Identities = 1994/2059 (97%), Gaps = 7/2059 (0%)
Strand=Plus/Plus
Query 1 CTCTGCCAAAAATGGCGAGTCTACTTGATTCGTTGACAACCAGAGGCTTCTTCACCATTC 60
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 49 CTCTGCCAAAAATGGCGAGTCTACTCGATTCGTTGACAACCAGAGGGTTCTTCACCATGC 108
Query 61 CTTCAATttctaggatttcttctcctttagcttcttcatcttcattgacttcttcaccat 120
| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 109 CCTCAATTTCTAGGATTTATTCTCCTCTAGCTTCTTCAACTTCATTGACTTCTTCACCAT 168
Query 121 cttcctcttcttcGATTATCCCATCCTTGTCAGTTCTCTCTTACACTCACCAACACTCGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 169 CTTCCTCTTCTTCGATTATCCCATCCTTGTCAGTTCTCTCTTACACTCACCAACACCCGC 228
Query 181 A-T--TCTCGCTTCCCTTTCCTTGTTGCAGCAACTCTGGATGGTTCCTCTGCTGAAGAAG 237
| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 229 ATTCCTCTCGCTTCCCTTTCCTTGTTGCAGCAACTCTGGATGGTTCCTCTGCTGAGGAAG 288
Query 238 AGCTAGATTTCGAAGAATTCGACCAATATGCTGAAGACAACTACGC---TGATGATTCCG 294
||||||||||||| ||||||||||||||||||||||| |||| ||| |||| |||| |
Sbjct 289 AGCTAGATTTCGAGGAATTCGACCAATATGCTGAAGATAACTTCGCAGATGATTATTCGG 348
Query 295 ATGACGAAGACGACTCCATCGATATCTCCGTTCTTGAGAAAGAAGCGAGAGATATCGTGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATGACGAAGACGACTCCATCGATATCTCCGTTCTTGAGAAAGAAGCGAGAGATATCGTGA 408
Query 355 GAGATTATGCTACCACTTTGTCTCGCGAGCTCAAACTCGAGGATGAGACCATTGAGGGGA 414
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 409 GAGATTATGCTACCACTCTGTCTCGCGAGCTCAAAATCGAGGATGAGACCATTGAGGGGA 468
Query 415 AGGAAACTCGTAGAAAAGGGAAAAGGCTAGCCAAAAATACGCAGCAGATACCAGAGCATC 474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 AGGAAACTCGTAGAAAAGGGAAAAGGCTAGCCAAAAATACACAGCAGATACCAGAGCATC 528
Query 475 TTCTCCAAAGAGTTGCGATAGTTGGAAGGCCCAATGTTGGCAAATCAGCATTGTTCAACC 534
|||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 529 TTCTCCAAAGAGTTGCTATAGTTGGAAGGCCTAATGTCGGAAAATCAGCATTGTTCAACC 588
Query 535 GTCTTGTTGGGGAGAATAGAGCTATTGTAGTGGATGAACCTGGAGTTACTAGGGATCGAT 594
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCCTTGTTGGGGAGAATAGAGCTATTGTAGTGGATGAACCTGGAGTTACTAGGGATCGAT 648
Query 595 TGTACGGTAGATCGTATTGGGGTGATCAAGAATTTGTGGTGGTAGACACAGGAGGTGTTA 654
|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 649 TGTATGGTAGATCATATTGGGGTGATCAAGAGTTTGTGGTGGTAGACACCGGAGGAGTTA 708
Query 655 TGACTGTTTCAAAGTCACCATCTGGTGTCATGGAAGAGCTGAATGTGTCAACCACCATTG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGACTGTTTCAAAGTCACCATCTGGTGTCATGGAAGAGCTGAATGTGTCAACCACCATTG 768
Query 715 GGATGGAAGGTATTCCACTAAGCTCTAGGGAAGCAGCTATTGCAAGGATGCCTTCCATGA 774
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GCATGGAAGGTATTCCACTAAGCTCTAGGGAAGCAGCTATTGCAAGGATGCCTTCCATGA 828
Query 775 TTGAGAAACAAGCGACAGCAGCTGTCGACGAATCAGCTGTTATTATTTTCGTTGTCGATG 834
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTGAGAAACAAGCTACAGCAGCTGTCGACGAATCAGCTGTTATTATTTTCGTTGTCGATG 888
Query 835 GCCAGGCAGGGCCATCAGGTGCTGATGTGGAAATTGCGGACTGGTTGCGGAAGTACTACT 894
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 889 GCCAGGCAGGGCCATCAGGTGCTGATGTGGAAATTGCAGACTGGTTGCGGAAGTACTACT 948
Query 895 CACATAAGTATATCATTCTCGCGGTAAACAAATGTGAATCACCACGTAAAGGACTCATGC 954
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 949 CACATAAGTATATCATTCTCGCGGTGAACAAGTGTGAATCGCCACGTAAAGGACTCATGC 1008
Query 955 AGGCTTCGGAATTTTGGTCTCTAGGGTTCACACCTATCCCTATTTCTGCATTGTCGGGAA 1014
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1009 AGGCTTCGGAATTTTGGTCTCTAGGGTTCACACCTATCCCTATCTCTGCATTGTCGGGAA 1068
Query 1015 CTGGAACAGGAGAGCTGCTTGATCTTGTTTGTTCTGGGCTAAATAAACTCGAGATCATGG 1074
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1069 CTGGAACAGGAGAGCTGCTTGATCTTGTTTGTTCTGGCCTAATTAAACTCGAGATCATGG 1128
Query 1075 AGAACATCGAAGAGGAGGAAGAAGAAAACTACATTCCTGCCATTGCAATTATTGGTCGGC 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AGAACATTGAAGAGGAGGAAGAAGAAAACTACATTCCTGCCATTGCAATTATTGGTCGGC 1188
Query 1135 CAAATGTTGGCAAAAGTAGCATTTTAAATGCACTTGTCCGAGAGGATAGAACAATAGTTA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1189 CAAATGTTGGCAAAAGTAGCATTTTAAATGCACTTGTCCGAGAGGATAGAACAATTGTTA 1248
Query 1195 GCCCTGTTAGTGGAACTACCCGTGATGCTATAGATGCAGAATTTACCGGACCAGATGGGG 1254
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GCCCTGTTAGTGGCACTACCCGTGATGCTATAGATGCAGAATTTACCGGACCAGATGGGG 1308
Query 1255 AGAAGTTTCGGCTTATAGATACAGCCGGGATCAGGAAAAAGTCATCTGTGGCTTCATCAG 1314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1309 AGAAGTTTCGGCTTATAGATACAGCTGGGATCAGGAAAAAGTCATCTGTGGCTTCATCAG 1368
Query 1315 GCAGCACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GCAGCACTACAGAGGCCATGTCAGTGAATCGTGCATTTCGAGCAATTCGTCGTTCTGATG 1428
Query 1375 TTGTTGCCCTTGTCATTGAAGCCATGGCATGCATAACAGAGCAGGATCTGAAGATTGCAG 1434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1429 TTGTTGCCCTTGTCATTGAAGCTATGGCATGCATAACAGAGCAGGATCTGAAGATTGCAG 1488
Query 1435 AAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTGTTGTAAACAAATGGGATACAATAC 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 AAAGAATAGAAAGAGAAGGGAAAGGATGTCTGGTTGTTGTAAACAAATGGGATACAATAC 1548
Query 1495 CAAACAAAAACCAAGAGACTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTT 1554
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CGAACAAAAACCAAGAGACTGCAGCACATTACGAGGACGATGTTCGGGAGAAGCTCCGTT 1608
Query 1555 CCCTCAAATGGGCACCTATTGTTTATTCTACTGCAATAACTGGCCATAGTGTTGACAATA 1614
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1609 CCCTCAAATGGGCACCTATTGTTTATTCAACCGCAATAACTGGCCATAGCGTTGACAATA 1668
Query 1615 TTGTGGTTGCTGCTGCGACGGTTCAAAAGGAGAGATCAAGAAGACTTAGTACAGCCATAT 1674
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1669 TTGTGGTTGCTGCTGCTACGGTTCAAAAGGAGAGATCAAGAAGACTTAGTACGGCTATAT 1728
Query 1675 TGAACCAAGTGATAAGAGAAGCAGTTGCATTTAAATCCCCTCCAAGAACCCGTGGAGGCA 1734
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1729 TGAACCAAGTGATAAGAGAAGCAGTTGCATTTAAATCCCCTCCAAGGACCCGTGGAGGCA 1788
Query 1735 AGCGAGGCCGCGTTTACTATTGCACCCAGGCAGCAATAAGGCCACCGACGTTTGTTTTCT 1794
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 AGCGAGGTCGCGTTTACTATTGCACCCAGGCAGCAATAAGGCCACCGACGTTTGTTTTCT 1848
Query 1795 TTGTAAACGACGCAAAGCTGTTTTCGGATACGTACAGAAGGTATATGGAGAAGCAGCTAC 1854
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1849 TTGTAAACGACGCAAAGCTGTTTTCGGATACGTACAGAAGGTATATGGAGAAACAGCTAC 1908
Query 1855 GCACTGATGCAGGCTTTGCTGGGACTCCAATTCGGCTTCTTTGGCGCAGTCGTAAACGAT 1914
|||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1909 GCACTGATGCAGGCTTTGCTGGGACTCCAATTCGGCTTCTTTGGCGTAGCCGTAAAAGAT 1968
Query 1915 CTGACAAAAATGGAGGAGGTGGAGGAACAATGAGAATGGCAGGTCTTACACGCCAGAGAA 1974
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1969 CTGACAAAAATGGAGGAGGTGGAGGAACAATGAGAATGGCAGGCCTTACACGTCAGAGAA 2028
Query 1975 ATCTTGCAACCAAAAGAACATAATAACGGACGATGTAATTTTTGTTGTATTGAAAAATAA 2034
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2029 ATCTTGCAACCAAAAGAACATAATAACCGACGATGTAATTTT-GTTGTATTGAAAAATAA 2087
Query 2035 TTACTATCAAAATATATAT 2053
|||||||||| ||||||||
Sbjct 2088 TTACTATCAATATATATAT 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5