BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478564
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12090.1 | Symbols: TET6 | tetraspanin6 | chr3:3852145-38537... 1519 0.0
> AT3G12090.1 | Symbols: TET6 | tetraspanin6 | chr3:3852145-3853720
REVERSE LENGTH=1036
Length=1036
Score = 1519 bits (822), Expect = 0.0
Identities = 891/925 (96%), Gaps = 2/925 (0%)
Strand=Plus/Plus
Query 1 ACTATTATGTACAGATTCAGCAACACAGTTATTGGGGTCTTAAACCTCCTCACCTTACTA 60
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ACTACTATGTACAGATTCAGCAACACAGTTATTGGGGTCTTAAACCTTCTCACCTTACTA 60
Query 61 GCCTCGATTCCAATCATAGGAACTGCTTTATATAAGGCAAGAAGCAGCACGACATGTGAA 120
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 GCCTCGATTCCAATCATCGGAACCGCTTTATACAAGGCAAGAAGCAGCACGACATGTGAA 120
Query 121 AACTTCCTCCAGACGCCGCTACTTGTTATAGGATTCATCATACTCTTAGTATCGCTTGCG 180
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 121 AACTTCCTCCAGACGCCGCTACTTGTTATAGGATTCATCATACTCATAGTTTCCCTTGCG 180
Query 181 GGTTTCATAGGAGCCTGCTTCAACGTCGCATGGGCTCTTTGGGTATACTTAGTGGTGATG 240
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 181 GGATTCATAGGAGCCTGCTTCAACGTGGCATGGGCTCTTTGGGTGTACTTAGTGGTCATG 240
Query 241 ATCTTCCTCATCGCGACTCTAATGGGTCTAACACTGTTTGGTCTGGTGGTGACGAGCCAA 300
|||||||||||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 241 ATCTTCCTCATCGCTACCCTAATGGGTCTAACGCTATTTGGTCTGGTGGTGACGAGCCAA 300
Query 301 GGAGGTGGAGTGGAAGTTCCAGGGAGGGTTTATAAAGAGTATAGGCTTGGAGACTATCAT 360
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGAGGTGGAGTGGAAGTGCCAGGGAGGATTTATAAAGAGTATAGGCTTGGAGACTATCAT 360
Query 361 CCATGGTTGAGAGAGAGAGTTAGGGATCCTCAGTATTGGAACTCCATTAGAAGCTGTATC 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CCATGGTTGAGAGAGAGAGTTAGGGATCCTGAGTATTGGAACTCCATTAGAAGCTGTATC 420
Query 421 TTGAGTTCCAAGACTTGTACTAAGATTGAGACTTGGACTACACTTGATTATTTCCAAAGA 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TTGAGTTCCAAGACTTGTACTAAGATTGAGTCTTGGACTACACTTGATTATTTCCAAAGA 480
Query 481 GACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCACCAACGGCGTGCACGTACGAAGCT 540
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 481 GACATGACTTCTGTTCAGTCGGGATGTTGTAAGCCACCGACGGCGTGTACGTACGAAGCT 540
Query 541 GGAGTAGTGGATGGAGGAGGAGATTGCTACAGATGGAACAATGGAGTGGAGATGTTATGC 600
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 541 GGAGTAGTGGACGGAGGAGGAGATTGCTTCAGATGGAACAATGGAGTGGAGATGTTATGC 600
Query 601 TACGAGTGCGATGCTTGCAAGGCTGGTGTTCTCGAAGAGATCCGTCTCGACTGGAGAAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TACGAGTGCGATGCTTGCAAGGCTGGTGTTCTCGAAGAGATCCGTCTCGACTGGAGAAAG 660
Query 661 TTATCGGTTGTCAACATTCTCGTCCTCGTCCTCCTCATTGCGGTCTACGCAGCTGGTTGC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 661 TTATCGGTTGTCAACATTCTCGTCCTCGTCCTCCTCATCGCGGTCTACGCCGCTGGTTGC 720
Query 721 TGCGCCTTCCACAACACTCGCCACGCGGCTCATCCTTACCATCCATCTGATGATAACCGC 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TGCGCCTTCCACAACACTCGCCACGCAGCTCATCCTTACCATCCATCTGATGATAACCGC 780
Query 781 ATGACCAGAGTCCGTCCTCGTTGGGACTATTACTGGTGGAGATGGTGGCACGAAAAGAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGACCAGAGTCCGTCCTCGTTGGGACTATTACTGGTGGAGATGGTGGCACGAAAAGAAA 840
Query 841 GAGCAGCTTTACTGAAATCCGCATC-TTCTTTTGTTTCTTAAACATTTTCTTTTTAGCAA 899
||||||||||||| ||| ||||||| || ||||||| ||||| |||||||||||||||||
Sbjct 841 GAGCAGCTTTACTAAAAGCCGCATCGTTTTTTTGTT-CTTAATCATTTTCTTTTTAGCAA 899
Query 900 ACTGAGATTAAGAAAACACAAAGAT 924
||| |||||||||||||||||||||
Sbjct 900 ACTTAGATTAAGAAAACACAAAGAT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5