BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478573
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12140.3 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-li... 1759 0.0
AT5G06780.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-li... 444 1e-123
> AT3G12140.3 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like
domains-containing protein | chr3:3869069-3871713 REVERSE
LENGTH=1535
Length=1535
Score = 1759 bits (952), Expect = 0.0
Identities = 1155/1247 (93%), Gaps = 37/1247 (3%)
Strand=Plus/Plus
Query 52 tttttttCAAATTCTTTCAATTTCTCGTTTCAATCCCCTCAATTCTTCGTTTCACCGAAC 111
||||| || ||||||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct 94 TTTTTGTCCAATTCTTTCAACTTCTCGTTCCAATCCCCTCAATTCTCCGTTTCACCGAAC 153
Query 112 GCACGTCGAACCCTTAATTGCtttttttCGGGTTAAGTTTCGATTCGAGCTTTTTAGGGT 171
|||| |||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||
Sbjct 154 GCACTTCGAACCCTTAATTGC-TTTTTGCGGGTCAAGTTTCGATTCGAGCGTTTTAGGGT 212
Query 172 TTCGTATCTGAATCGGTCGACAAGGTAAACCCTTTTGT---GG---------GATTCCGA 219
|||||||||||||||||||||||| ||||||||||||| || |||| |||
Sbjct 213 TTCGTATCTGAATCGGTCGACAAGATAAACCCTTTTGTGGGGGTTTCCTCTAGATTTCGA 272
Query 220 AAACAGAGGTATAGCTTTCGTTTGGATGGGAATTCTCTGAAACTAAACTACATAGTGATA 279
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 273 AAACAGAGGGATAGCTTTCGTTTGGATGGAAATTCTCTGAAACTAAACTACATAGTGATA 332
Query 280 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TGGAGACACAAATTCATCAACTTGAGCAGGAAGCATATACCGCTGTTTTAAGGGCTTTTA 392
Query 340 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AAGCGCAGTCTGATGCGATTTCTTGGGAAAAAGAAAGCTTGATAACCGAATTGCGTAAAG 452
Query 400 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTGAGTAGGGTTAATAAGGATGATA 459
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 453 AATTGAGAGTATCTGATGATGAACATCGAGAGCTTCTCAGTAGGGTCAATAAGGATGATA 512
Query 460 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGGAAGCCAAAATACTAGACATGCAA 519
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 513 CTATCCAGAGGATAAGAGATTGGAGACAGGGAGGCGCAAGCCAAATTACTAGACATGCAA 572
Query 520 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGGCCGAAAGAAACAGA 579
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 573 CTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCTCAGCTGCCCGAAAGAAACAGA 632
Query 580 AAACATT-CCAATCTTATCATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAGT 638
||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 633 AAACATTTCCA-TCTTATAATCCATCAATTGGTGCGACTGGAAATAGGTCATTCAATAAT 691
Query 639 CGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCTGAAGCTTTGATCGGAAGAAAA 698
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 692 CGTCTGGTATCCAGTGGCATATCAGGAAATGAATCTGCTGAAGCTCTGATCGGAAGAAAA 751
Query 699 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GTGTGGACAAAATGGCCTGAAGATAACCACTTCTATGAAGCAATTATAACCCAGTACAAT 811
Query 759 GCAGATGATGGTCGGCATGCTTTGGTGTATGATATACATGCAGCTAATGAAACGTGGGAA 818
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 GCAGATGAGGGTCGGCATGCTTTGGTGTATGATATACACGCAGCTAATGAAACGTGGGAA 871
Query 819 TGGGTTGATCTCAAGGAGATACCACCGGAAGATATACGGTGGGATGGGGAGGAGAGTGGG 878
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 872 TGGGTTGATCTCAAGGAGATACCACCGGAAGACATAAGATGGGATGGGGAGGAGAGTGGG 931
Query 879 GTAGCTTTAAACATCGGACATGGAAGTGGATCATTCCGTGGCAACCGAAGAAGCCAAGTC 938
|||||||||||||| ||||||||||||| ||| |||||||||||| ||||| ||||| ||
Sbjct 932 GTAGCTTTAAACATTGGACATGGAAGTGCATCCTTCCGTGGCAACAGAAGAGGCCAAATC 991
Query 939 CATGGTGGTAGAGGGAGAGGGCCAAGAATTCATCAACCAAGAAGAGAACTCT-TACCACC 997
|||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||| ||
Sbjct 992 CATGGTGGTAGAGGGAGAGGACCAAGAATTCATCAACCAAGAAGGGAACT-TGTACCGCC 1050
Query 998 ACCAACACAACAGAATGGTGGTGGTGGTCGGAGAACTTCCTCTGATGATATTGAATTGTT 1057
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 1051 ACCAACACAACAGAATGGTAGTGGTGGGCGGAGAACTTCCTCTGATGATATTGAGTTGTT 1110
Query 1058 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACTCATCCTGATCC 1117
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1111 CAACACAGACTCGCTTGTGAAGGAGGTGGAGAGAGTTTTCGATTCTACGCATCCTGATCC 1170
Query 1118 GCTCGAGCTCGATAAGGCCAAGAAAATGCTCAAGAGAATAAT-AACAA-CA---A--G-T 1169
||||||||||| ||||||||||||||||||||| ||| | | |||| || | | |
Sbjct 1171 ACTCGAGCTCGACAAGGCCAAGAAAATGCTCAAG-GAACA-TGAACAGGCACTCATTGCT 1228
Query 1170 G---T-GC-----TTGCTGATACTTCTGATGGCGAAATGGGTAATAATAACAAAATCATG 1220
| | || ||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1229 GCCATTGCAAGGCTTGCTGATACTTCGGATGGCGAAATGGGTAATAATAACAAAAGCACG 1288
Query 1221 CTATGTTTAGTTTGTGATCTCAGAATAA-ATTTTATTTACCCTTGAA 1266
||| |||||||||| | |||||||||| || ||||||||| |||||
Sbjct 1289 CTACGTTTAGTTTGCAACCTCAGAATAATATATTATTTACCATTGAA 1335
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 GAGTCCCGGAGAAATCGATCGTAGCTCT 28
||||||||||||||||||||||||||||
Sbjct 7 GAGTCCCGGAGAAATCGATCGTAGCTCT 34
> AT5G06780.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like
domains-containing protein | chr5:2093926-2097129 REVERSE
LENGTH=1535
Length=1535
Score = 444 bits (240), Expect = 1e-123
Identities = 700/909 (77%), Gaps = 83/909 (9%)
Strand=Plus/Plus
Query 267 CTACATAGTGATATGG-AGACACAAATTCATCA-ACTTGAGCAGGAAGCATATACCGCTG 324
||||| | | |||||| || | || |||||| | ||||||||||||||| ||| | ||||
Sbjct 361 CTACACATTAATATGGAAG-CGCAGATTCAT-ATACTTGAGCAGGAAGCTTATTCTGCTG 418
Query 325 TTTTAAGGGCTTTTAAAGCGCAGTCTGATGCGA-TTTCTTGGGAAAAAGAAAGCTTGATA 383
| ||||| |||||| |||| ||| |||||| | |||||||||| |||| || | ||||
Sbjct 419 TATTAAGAGCTTTTCAAGCACAGGCTGATG-AATTTTCTTGGGATAAAGCAACCGTGATG 477
Query 384 ACCGAA-TTGCGTAAAGAATTGA-GAGTATCTGATGATGAACATCGAGAGCT-TCTGAGT 440
| | || | ||||||||||||| || |||||||||||||| | ||| | || | |||
Sbjct 478 A-CAAACCTACGTAAAGAATTGAGGA-TATCTGATGATGAAAACCGACAACTGT-TGAAC 534
Query 441 AGGGTTAATAAGGATGATAC-TATCCAGAGGATAAGAGATTGGAGA-CAGGGAGGCGGAA 498
| || |||| |||||| | |||| | || |||||||||| |||| || |||| ||||
Sbjct 535 AATGTCCATAATGATGAT-CTTATCAAAAGAATAAGAGATTCGAGACCA-AGAGGTGGAA 592
Query 499 GCCAAAATACTAGACATGCAACTATTCAGCCTTTTGATGTTCTTCCTAGTCCCACTTTCT 558
||| | ||||||| | | || || | ||||||| ||||||||| ||||| |
Sbjct 593 ACCAGGTTGTTAGACAT----C-AGTC--CC--TCGATGTTCATCCTAGTCCGACTTTTT 643
Query 559 CAGCTGGC-CGAAAGAAACAGAAAACATTCCAATCTTATCATCCATCAATTGGTGCGACT 617
||||| | || ||||||||||| || |||||||| | |||| || |||||| | |||
Sbjct 644 CAGCT-TCTCGGAAGAAACAGAAGACGTTCCAATC--CT-ATCCGTCGATTGGTTCTACT 699
Query 618 GGAAATAGGTCATTCAATAGTCGTGTGGTATCTGGTGGCATATCAGGAAATGAATCTGCT 677
||| || ||||||||||| | || ||| | |||||| ||||||| ||||
Sbjct 700 AGAAGTAAGTCATTCAATA-AC-CGT-GTA-------G--TATCAGCAAATGAACCTGCG 747
Query 678 GAAGCT-TTGATCGGAAGAAAAGTGTGGACAAAATGGCCTGAAGATAACCA-CTTCTATG 735
|||||| || || |||||||||||||||||||||||||||||||| ||| | ||| ||||
Sbjct 748 GAAGCTCTT-ATTGGAAGAAAAGTGTGGACAAAATGGCCTGAAGACAAC-AGCTTTTATG 805
Query 736 AAGCAATTA-TAACCCAGTACAATGCAGATGATGGTCGGCATGCTTTGGTGTATGATATA 794
||||| | | | || || ||||||||| |||| ||||| ||||| ||||| |||||||||
Sbjct 806 AAGCAGT-AGTTACACAATACAATGCAAATGAGGGTCGACATGCGTTGGTATATGATATA 864
Query 795 CATGCAGCT-AATGAAACGTGGGAATGGGTTGATCTCAAGGAGATACCACCGGAAGATAT 853
| ||| | ||||| || ||||||||||||||||| || ||||| ||| || |||||||
Sbjct 865 AACACAG-TGAATGAGACATGGGAATGGGTTGATCTTAATGAGATTCCAACGAAAGATAT 923
Query 854 ACGGTGGGATGGGGAGGA-GAGTGGGGTAGCTTTAAACATCGGACATGGAAGTGGATCAT 912
| | |||||||| ||||| || ||||||| |||| || | |||||||| ||||| ||
Sbjct 924 AAGATGGGATGGAGAGGAAGA-TGGGGTAACTTTGAATGTAGGACATGGCGGTGGAACAA 982
Query 913 -TCCGTGGCAACCGAAGAAGCC--AAGTCCATGGTGGTAGAGGGAGAGGGCCAAGAATTC 969
|| |||| || ||||| | || ||| ||||||||||||||||||||| ||||||| |
Sbjct 983 CTC-GTGGGAATCGAAGGA-CCTTAAG-CCATGGTGGTAGAGGGAGAGGTCCAAGAA--C 1037
Query 970 ATCAACCAAGAAGAGAAC-TCTTACCACCACCAACACAACAGAATGGTGGTGGTGGTCGG 1028
||| ||||||||||||| | ||| || || | | ||| | | |||||| | ||
Sbjct 1038 -TCAGCCAAGAAGAGAACAT-TTAGCA--ACGGA-A-AAC-G---G-TGGTGG-GA--GG 1083
Query 1029 AGAACTTCCTCTGATGATATTGAATTGTTCAACACAGACTCGCTTGTGAAGGAGGTGGAG 1088
| | || || | ||| ||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1084 A-AGTTTT-TCGG-TGAGATTGAATTGTTCAACACAGACTCACTTGTGAAAGAGGTCGAG 1140
Query 1089 AGAGTTTTCGATTCTA-CTCATCCTGATCCGC-TCGAGCTCGATAAGGCCAAGAAAATGC 1146
|||||||| ||||| | | | ||||||||| | | ||||| |||||||||||||| | |
Sbjct 1141 AGAGTTTTTGATTCAAAC-CTTCCTGATCCACAT-GAGCTTGATAAGGCCAAGAAGCTAC 1198
Query 1147 TCAAGAGAA 1155
||||| |||
Sbjct 1199 TCAAG-GAA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5