BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478575
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12150.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1766 0.0
> AT3G12150.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149);
Has 421 Blast hits to 334 proteins in 155 species: Archae
- 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants
- 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
| chr3:3876407-3878900 REVERSE LENGTH=1652
Length=1652
Score = 1766 bits (956), Expect = 0.0
Identities = 1044/1088 (96%), Gaps = 0/1088 (0%)
Strand=Plus/Plus
Query 192 GAACAATGGTGTCGATCAAATTGGGAATGCTCCATTATGTAATTGACCATGTATATGGAG 251
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 284 GAACAATGGTGACGACCAAATTGGGAATGCTCCATTATGTAATTGACCATATATATGGAG 343
Query 252 CGTTTATGCACCGCACCAAGATAACCCCACCCTTCTTCTCTCGAGGATGGGGTGGTCCGA 311
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 344 CGTTTATGCACCGCACCAAGATGACCCCACCCTTCTTCTCTCGAGGTTGGGGTGGTCCCA 403
Query 312 ATCTGGAATTGCTCGAGCGGATGGTTCAACGCCTCTTTCCGCTTGAGGTTCAAGGTCAGA 371
|||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 404 ATCTCGAATTGCTCGAGCGTATGGTTCAACGCCTCTTCCCTCTTGAGGTTCAAGGTCAGA 463
Query 372 ATTGGCCACCGCCTTTGGTTCGTCCACTCTGGAGGACTGTTTGGGAGACAAAGACCGCTA 431
|||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 464 ATTGGCCACCGCCTCTGGTTCGTCCAGTCTGGAGAACTGTTTGGGAGACAAAGACCGCTA 523
Query 432 CTTTGAGAGAAGGCGTTTTCCAGACTCCGTGTGCCGATGAGCTAACCGCTGCTTTGCCTC 491
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 524 CTTTGAGAGAAGGTGTTTTCCAGACTCCTTGTGCCGATGAGCTTACCGCTGCTTTGCCTC 583
Query 492 CGGAGTCTCGCACCGCCAGGGTTGCTTGGCTTGTCCCCAAAAACGTTCCTCCCCAAAAGA 551
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CGGAGTCTCGCACAGCCAGGGTTGCTTGGCTTGTCCCCAAAAACGTTCCTCCCCAAAAGA 643
Query 552 TGGCTTGTGTGGTTCATCTTGCAGGTACGGGTGATCATACATATGATCGAAGATTGCGTC 611
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 644 TGGCTTGTGTGGTTCATCTTGCAGGCACAGGTGATCATACATATGACCGAAGATTGCGTT 703
Query 612 TAGGTGGACCGTTGGTGAAACAAAACATTGCAACAATGGTGTTGGAAAGCCCTTTCTATG 671
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TGGGTGGACCGTTGGTGAAACAAAACATTGCAACAATGGTGTTGGAAAGCCCTTTCTATG 763
Query 672 GCCAAAGGCGTCCGTTTCTTCAACGTGGTGCAAGACTCCTCTGTGTTAGTGATTTACTTT 731
||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| ||||||
Sbjct 764 GCCAAAGGCGTCCCTTTCTTCAATGCGGTGCGAGACTCCTCTGTGTTAGTGATCTACTTT 823
Query 732 TACTAGGGAGGGCAACGATTGAAGAGTCTCGCAGTCTTATTCACTGGCTAGACACTGAGG 791
| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 824 TGCTAGGGAGGGCAACAATCGAAGAGTCCCGCAGTCTTATTCACTGGCTAGACACTGAGG 883
Query 792 AAGGCTTTGGAAAGATGGGTGTTTGTGGGCTTAGTATGGGAGGAGTACATGCTTCGATGG 851
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 884 AAGGCTTTGGAAAGATGGGTGTTTGTGGGCTAAGTATGGGAGGAGTACATGCTTCGATGG 943
Query 852 TTGGATCGCTTCATCCAACACCAGTTGCAACACTTCCATTCCTATCTCCGCACTCTGCTG 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTGGATCGCTTCATCCAACACCAGTTGCAACACTTCCATTCCTATCTCCGCACTCTGCTG 1003
Query 912 TTGTTGCATTCTGCGAAGGAATATTAAAGTATGGAACCGCTTGGGAAGCACTGAGGGAGG 971
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1004 TTGTTGCATTCTGCGAAGGAATATTAAAGTATGGGACTGCTTGGGAGGCACTGAGGGAGG 1063
Query 972 AACTTGCAGCACAGAAGATCACAATGAGTCTTGATGAAGTGAGAGAGCGGATGCGAAATG 1031
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1064 AACTTGCAGCACAGAAGATCACAATGACTCTTGATGAAGTGAGAGAGCGGATGCGGAATG 1123
Query 1032 TTCTCTCCCTCACAGATGTCACTCGCTTCCCTATCCCCAAAAACCCTGATGCTGTTATCT 1091
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1124 TTCTCTCCCTCACAGACGTCACTCGCTTCCCTATTCCCAAAAACCCTGATGCTGTTATCT 1183
Query 1092 TTGTTGCTGCAACTGATGATGGATACATACCAAAACACTCAGTGTTGGAGCTTCAAAAGG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TTGTTGCTGCAACTGATGATGGATACATACCAAAACACTCAGTGTTGGAGCTTCAAAAGG 1243
Query 1152 CGTGGCCTGGTTCAGAAGTGAGATGGGTCACAGGTGGACACGTGTCTTCCTTTCTGCTTC 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1244 CGTGGCCTGGTTCAGAAGTGAGATGGGTCACAGGTGGACACGTGTCTTCCTTTATACTTC 1303
Query 1212 ACAACGATGAGTTTCGCAGAGCAATCGTGGACGGTCTCGATAGAGTAGAGTGGAAGGAGT 1271
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1304 ACAATGATGAGTTTCGCAGAGCAATCGTGGACGGTCTCGATAGATTAGACTGGAAGGAGT 1363
Query 1272 CATGGTGA 1279
||||||||
Sbjct 1364 CATGGTGA 1371
Score = 276 bits (149), Expect = 5e-73
Identities = 181/196 (92%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 1280 ATGTAAATGTCTTAATCTCTTCTTGTTGTATCATTTGTGTTGTTTTAAGAATAAGATTCT 1339
||||||||||||||||||| ||||||||||||||||||| | | ||| ||||||||||||
Sbjct 1423 ATGTAAATGTCTTAATCTCCTCTTGTTGTATCATTTGTG-TATGTTAGGAATAAGATTCT 1481
Query 1340 TTGCGCTTTCAAAAGTGGTGGGCTCTGATATTCATTTGTCTTTGTATTGTTTTTGTCCCA 1399
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 1482 TTGCGCTTTCAAAAGTGGTGGGCTCTGATATTTATTTGTC-TTGTGTTGTTTTTGTCCCA 1540
Query 1400 ACACATAGCAACAATTTTAGAGGTATCCACTCATTACATTCGATTAATATGTCATATACA 1459
|||||||||||| ||||||| ||| | | |||||||||||| ||||||||||||||||||
Sbjct 1541 ACACATAGCAACCATTTTAGGGGTTTTCGCTCATTACATTCCATTAATATGTCATATACA 1600
Query 1460 TTGGA-CTTTAACATT 1474
||||| ||||||||||
Sbjct 1601 TTGGATCTTTAACATT 1616
Score = 222 bits (120), Expect = 7e-57
Identities = 171/194 (88%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTTAGATTTCTCCATCGATCTTGAACAAAGCATTCACCTTTGCATTCATA 60
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 51 TCTTATTCTTCTTAGATTTCTCCATCGATCTCGAACAAAGGATTCACCTTTGCATTCATA 110
Query 61 TTC-TTATTCTTGACTTCCAAGTCAAttttttttCCCAATTCGA-AAATCAAACTGGGTA 118
||| ||| |||||||||| ||||||| | || |||||| ||| |||| |||| |
Sbjct 111 TTCTTTA-TCTTGACTTCAAAGTCAA----ACCT-CCGATTCGATAAA-CAAATTGGGGA 163
Query 119 ATGGATGATTGCGTTCGTCTTTCTCACCAGATCTGAAGAACCCAAATTCCAAATTCATAT 178
||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 164 ATGGATGCTTGCTTTCGTCTTTCTCACCAGATCTGAAGCACCCAAGTTCCAAATTCATAT 223
Query 179 TCGATTCACCGGCG 192
||||||||||||||
Sbjct 224 TCGATTCACCGGCG 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5