BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478579
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12200.2 | Symbols: Nek7 | NIMA-related kinase 7 | chr3:3887... 2444 0.0
> AT3G12200.2 | Symbols: Nek7 | NIMA-related kinase 7 | chr3:3887108-3891000
REVERSE LENGTH=2261
Length=2261
Score = 2444 bits (1323), Expect = 0.0
Identities = 1503/1590 (95%), Gaps = 11/1590 (1%)
Strand=Plus/Plus
Query 406 GATGAAGTTGCTCTCAAATTTAAAGAATCCTTATATCATGCATTATGAAGATTCTTGGAT 465
|||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 678 GATGAAATTGCTCTCAAGCTTAAAGAATCCTTATATCGTGCATTATGAAGATTCTTGGAT 737
Query 466 TGACAAGGACAATAACGCCTGCATTTTTACTGCTTACTGTGAGGGAGGGAACATGGCTAC 525
|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 738 TGACAATGACAATAATGCCTGCATTTTTACTGCTTACTATGAGGGAGGGAACATGGCTAA 797
Query 526 TGCTATTAAGAAAGCGAGAGGAAAGTTATTTCCAGAGGAAAGAATCTTTAAATGGTTGGC 585
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 798 TGCTATTAAGAAAGCGAGAGGAAAATTATTCCCGGAGGAAAGAATCTTTAAATGGTTGGC 857
Query 586 ACAATTGTTACTGGCTGTTAACTATTTGCACTCAAACCGTGTAGTTCACATGGATCTAAC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ACAATTGTTACTGGCTGTTAACTATTTGCACTCAAACCGTGTAGTTCACATGGATCTAAC 917
Query 646 GTGCTCAAATATTTTCCTTCCGAAAGATGATCACGTCCAGCTTGGTAATTATGGTCTGGC 705
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GTGTTCAAATATTTTCCTGCCGAAAGATGATCACGTCCAGCTTGGTAATTATGGTCTGGC 977
Query 706 GAAACTTATAAATCCAGAAAAGCCAGTTTCCATGGTTTCGGGTATCTCTAACAGCATGTG 765
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 978 GAAACTTATAAATCCAGAAAAGCCTGTTTCCATGGTTTCGGGTATCTCTAACAGCATGTG 1037
Query 766 CCCTGAGGTATTAGAAGATCAACCATATGGATATAAATCTGACATATGGTCGTTGGGTTG 825
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1038 CCCTGAGGTATTAGAAGATCAACCATATGGATATAAATCTGACATATGGTCGCTGGGTTG 1097
Query 826 TTGTATGTATGAAATTACAGCACACCAGCCTGCGTTTAAAGCTCCGGATATGGCAGGACT 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1098 TTGTATGTATGAAATTACAGCACACCAGCCTGCGTTTAAAGCTCCGGATATGGCTGGACT 1157
Query 886 CATCAACAAAATAAACAGATCCCTTATGTCTCCTCTTCCGATTGTCTACTCATCTACCTT 945
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1158 CATCAATAAAATAAACAGATCCCTTATGTCTCCTCTTCCGATCGTCTACTCCTCTACCTT 1217
Query 946 GAAACAAATGATAAAGCTTATGCTTAGGAAGAAACCAGAATATAGGCCAACAGCCTGCGA 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1218 GAAACAAATGATAAAGCTTATGCTTAGGAAGAAACCAGAATATCGGCCAACAGCCTGCGA 1277
Query 1006 ATTGTTAAGAAACCCATGTCTACAACCATACCTTCTTCAATGCCAAAACCTGTCGCCTAT 1065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 ATTGTTAAGAAACCCATCTCTACAACCATACCTTCTTCAATGCCAAAACCTGTCGCCTAT 1337
Query 1066 TTACCTTCCTGTTTTCCCAATAAAGTCGGTAAATAGCCCAAAGGATAAAGCAAGAAGAAA 1125
||| ||||| |||||||| |||||| |||||||||| || ||||||||||||||||||||
Sbjct 1338 TTATCTTCCGGTTTTCCCGATAAAGCCGGTAAATAGTCCGAAGGATAAAGCAAGAAGAAA 1397
Query 1126 CTCATTGCCAGGAAAGTTTGTTAAGGAAAGAGATTCGAGAGAGAAGAGCGAGGTGTCCCG 1185
|||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 1398 CTCATTGCCAGGAAAGTTTGGAAAGGAAAGAGTTTCAAGAGAGAAGAGCGAGGTGTCCCG 1457
Query 1186 CAGTTTGGAAAATCTATATCCATTTTGGACGAATGCAGAGACTGGATCTAGCAGCTCATC 1245
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1458 CAGTTTGGAAAATCTATATCCATTTTGGACGAATACAGAGACTGGATCTAGCAGCTCATC 1517
Query 1246 GCAACCGGCATCATCCACAAATGGTGCAGAAGACAAACTTGAAACAAAAAGAATCGATCC 1305
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1518 GCAACCGGCATCATCTACGAATGGCGCAGAAGACAAACTTGAAACAAAAAGAATCGATCC 1577
Query 1306 AAGCTGCGACACATTGAAGATTTCTGAGTTTACTAGCCATAAGTCGGATGAGAGCTTAAT 1365
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1578 AAGCTGTGACACATTGAAGATTTCTGAGTTTACAAGCCAGAAGTCGGATGAGAGCTTAAT 1637
Query 1366 TGATCCTGATATTGCAGTTTACTCTACAGAAAAGCAAGCCGAAGAAAATGCTCTGCCAAA 1425
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1638 TGATCCTGATATTGCAGTTTACTCTACAGAAACGCCAGCCGAAGAAAATGCTCTGCCAAA 1697
Query 1426 AGAAACTGAAAATATGTTCTCTGAGGAATCTCAGTTACGTGATGTTGATGTTGGGGTTGT 1485
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 AGAAACTGAAAATATATTCTCTGAGGAATCTCAGTTACGTGATGTTGATGTTGGGGTTGT 1757
Query 1486 GAGTGCACAAGAAGTAGTATGTTCCCCTCCAAAAGCCATCGAAGAAGCTGAAACTCAGGA 1545
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1758 GAGTGCACAAGAAGTAGCATGTTCCCCTCCAAGAGCCATCGAAGAAGCTGAAACTCAGGA 1817
Query 1546 -GCTATTACCTGAACCAAAGGAACATAGAACGGTTTCCATTTCCAGCACTGCGCCTTCAT 1604
|| ||||||| ||||||||||||| | ||| || ||||||| || ||| | |||||
Sbjct 1818 GGC-ATTACCTAAACCAAAGGAACAGATAACAGTGCCCATTTCTAGTGTTGCACATTCAT 1876
Query 1605 CTACTGAAATTGCAGCAGCAGCAAGAGACCGTTTGTCTGGAAGCCTCGAGGGAGATGAAG 1664
|||||||| ||||||||||| || ||||| ||||||||||||||| ||||| ||| |||
Sbjct 1877 CTACTGAAGTTGCAGCAGCA--AA-AGACCATTTGTCTGGAAGCCTTGAGGGCGATAAAG 1933
Query 1665 TAAAGACGGTAAAACTAACAGCGAGTGAAATGTCATCGGTACTGAGTAAGCTCACAAAAC 1724
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1934 CAAAGATGGTGAAACTAACAGCGAGTGAAATGTCATCGGTACTAAGTAAGCTCACAAAAT 1993
Query 1725 TGGGCCCACCGCAGAGTAAAGAAAGGGCAGATGCGTTGGAGTGTTTGTTAGAGAAATGTG 1784
|||| || |||||||||||||||||||||||||| || |||||||| || ||||||||||
Sbjct 1994 TGGGTCCGCCGCAGAGTAAAGAAAGGGCAGATGCATTAGAGTGTTTATTGGAGAAATGTG 2053
Query 1785 CAGGGCTTGTTAAGCAAGAAAAATATGAAGAACTTGCTGGTTTGCTTACACCATTTGGGG 1844
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 CAGGGCTTGTAAAGCAAGAGAAATATGAAGAACTTGCTGGTTTGCTTACACCATTTGGGG 2113
Query 1845 AAGATGGTGTCTCGGCTAGGGACACTGCAATTTGGTTCGCAAAGACACTCTTGTCTTCTG 1904
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2114 AAGATGGTGTCTCGGCTAGGGACACTGCAATTTGGTTCGCAAAGACACTCTTGTCGTCTG 2173
Query 1905 AGAAACTCAACCAAGGAACCTGATTGAGTTTGAGA-AAATTTCCCTTTTTGGTTATTTGT 1963
| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 2174 ACAAACTCAACCAAGGAACCTGATTGAGTTAGAGACAAATTTCCCTTTTTGGTT-TTTGT 2232
Query 1964 CAAATATGTAAAAA--TTCCTTTT-TCATC 1990
|||||||||||||| ||| |||| |||||
Sbjct 2233 CAAATATGTAAAAAAATTC-TTTTATCATC 2261
Score = 348 bits (188), Expect = 1e-94
Identities = 237/260 (91%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 155 TGAAACTGGGTTCCTGTAGCTTTGTTTCTCCGGG--AGG----GGTTTTTTGAAGAATTC 208
||||| |||||| |||||||||| |||||||||| ||| ||||||||||| |||
Sbjct 391 TGAAATTGGGTTTCTGTAGCTTTTTTTCTCCGGGAAAGGTTTTTCTTTTTTGAAGATTTC 450
Query 209 ATGCAAATGGAGGCTAATGACTGTGAAGAAGAACACAAGTTCACTCTCGACAACTATCAT 268
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 451 ATGCAAATGGAGGCTAATGACTGTCAAGAGGAACATAAGTTCACTCTCGACAACTATCAT 510
Query 269 GTCGTGGAGCAGGTTAGAAGAGGCAAGTCCTCTTCCGATTTCTTGGTTCTTCATCAAATT 328
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 511 GTCGTGGAGCAGGTTAGAAGAGGCAAGTCCTCTTCCGATTTCGTGGTTCTTCATGATATT 570
Query 329 GAAGACAAAAAGTATGCAATGAAGAAGATTTGCCTGGCTAAACACACCGACAAGTTAAAG 388
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 571 GAAGACAAAAAGTATGCAATGAAGAAGATTTGCCTAGCGAAACACACGGACAAGTTAAAG 630
Query 389 CTAACCGCTTTCCAAGAGAT 408
| ||||||||| ||||||||
Sbjct 631 CAAACCGCTTTACAAGAGAT 650
Score = 156 bits (84), Expect = 1e-36
Identities = 138/162 (85%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 1 AAAAATAGAATCCAATGAC---CAT-AAAGTCTTGATAGGTGGGCGATTTCAACAT-CC- 54
||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 184 AAAAAAAGAATCCAATGACATAAATAAAAGTCTTGATAGGTGGGCGATTTCAACATACCT 243
Query 55 CCTTCC-TCCGTCGTCGGCTTCCATTGATTTTGACACTACTACAAGCGTTTTATGTCCGT 113
|| ||| | |||||||||||||||||||||||| |||||||||||| | ||| || | |
Sbjct 244 CC-TCCGT-CGTCGTCGGCTTCCATTGATTTTGGCACTACTACAAGAGACTTACGTTCTT 301
Query 114 CTTGATTGTCTTCTTCTTCTCTTTCTGAAACCCGAAGATTTT 155
||| ||| ||||||||| || || ||||||||| ||||||||
Sbjct 302 CTTCATTATCTTCTTCT-CT-TT-CTGAAACCCTAAGATTTT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104467334145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5