BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478581 Length=690 Score E Sequences producing significant alignments: (Bits) Value AT3G12210.2 | Symbols: | DNA binding | chr3:3894778-3896066 FO... 1075 0.0 > AT3G12210.2 | Symbols: | DNA binding | chr3:3894778-3896066 FORWARD LENGTH=882 Length=882 Score = 1075 bits (582), Expect = 0.0 Identities = 654/690 (95%), Gaps = 0/690 (0%) Strand=Plus/Plus Query 1 ATGGAACTAGACTTCAAGTGTTCCGATGTTGGAGTTTGGAAGGAGGCTCTGTCTTCCTAC 60 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 66 ATGGAACTAGAGTTCAAGTGTTCCGATGTTGGAGTATGGAAGGAGGCTCTGTCTTCGTAC 125 Query 61 GAATCCCGAATCGAGTCACTCAACAAACCAGACCTCGTCTCTCTCGATCAATTTTACCGC 120 || ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct 126 GATTCCCGAATCGAATCACTGAACAAACCAGAACTCGTCTCTCTCGACCAATTCTACCGC 185 Query 121 GTAAAACTCCCTTCTCTTCTTCACGACCGAGATCCTGACCCTTACCTCACCACCTCCGAG 180 | |||||||||| |||||||||||||||||| ||| ||||||||||||| || |||||| Sbjct 186 ATCAAACTCCCTTGTCTTCTTCACGACCGAGACCCTAACCCTTACCTCACTACTTCCGAG 245 Query 181 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGCAAATGGCGGCCGCGTCTGCTGGAT 240 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 246 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGAAAATGGCGGCCGCGTCTGCTGGAC 305 Query 241 TTCGTGTCGTCTCTAGAAGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTCAAATCG 300 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 306 TTCGTGTCGTCTCTAGACGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTTAAATCG 365 Query 301 CTTCCTGACATTTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTCCGGCC 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 366 CTTCCTGACATCTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTGCTGCC 425 Query 361 ACTGCCTCCGCCGTTCTGGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 420 || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 426 ACCGCATCCGCCGTTCTTGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 485 Query 421 GCAATGGAGGTGGCTCTCGGGAACTCAAAGGATTACTCTTTGAAGCAATACTTGTTGTTT 480 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 486 GCAATGGAGGTGGCTCTTGGGAACTCAAAGGATTACTCTTTGAAACAATACTTGTTGTTT 545 Query 481 GTAACTAAGCTACAAGATAAAGCCAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 540 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 546 GCAACTAAGCTACAAGATAAAGCAAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 605 Query 541 TCAGATGTTGAAAGAGCTCTATGGAGTTGTACTGTGAGTGCAAAGTCACAGCCAGAGAAG 600 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 606 TCAGATATTGAAAGAGCTCTATGGAGTTGTACTGTGCGTGCAAAGTCACAGCCAGAGAAG 665 Query 601 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCTAATTCACCTTCT 660 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 666 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCCAGTTCACCTTCC 725 Query 661 ATCCATTGTTAAGATCAACCATATGTCAGC 690 ||||||| |||||||||||||||||||||| Sbjct 726 ATCCATTTTTAAGATCAACCATATGTCAGC 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33405707755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5