BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478581
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12210.2 | Symbols: | DNA binding | chr3:3894778-3896066 FO... 1075 0.0
> AT3G12210.2 | Symbols: | DNA binding | chr3:3894778-3896066
FORWARD LENGTH=882
Length=882
Score = 1075 bits (582), Expect = 0.0
Identities = 654/690 (95%), Gaps = 0/690 (0%)
Strand=Plus/Plus
Query 1 ATGGAACTAGACTTCAAGTGTTCCGATGTTGGAGTTTGGAAGGAGGCTCTGTCTTCCTAC 60
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 66 ATGGAACTAGAGTTCAAGTGTTCCGATGTTGGAGTATGGAAGGAGGCTCTGTCTTCGTAC 125
Query 61 GAATCCCGAATCGAGTCACTCAACAAACCAGACCTCGTCTCTCTCGATCAATTTTACCGC 120
|| ||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 126 GATTCCCGAATCGAATCACTGAACAAACCAGAACTCGTCTCTCTCGACCAATTCTACCGC 185
Query 121 GTAAAACTCCCTTCTCTTCTTCACGACCGAGATCCTGACCCTTACCTCACCACCTCCGAG 180
| |||||||||| |||||||||||||||||| ||| ||||||||||||| || ||||||
Sbjct 186 ATCAAACTCCCTTGTCTTCTTCACGACCGAGACCCTAACCCTTACCTCACTACTTCCGAG 245
Query 181 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGCAAATGGCGGCCGCGTCTGCTGGAT 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 246 CTTTCTCAACTCATGAAATGGAAGCTCTCTCGTGGAAAATGGCGGCCGCGTCTGCTGGAC 305
Query 241 TTCGTGTCGTCTCTAGAAGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTCAAATCG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 306 TTCGTGTCGTCTCTAGACGATTCAGTGGTGAAATCTGCTTCTGAGAAAGCTTTTAAATCG 365
Query 301 CTTCCTGACATTTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTCCGGCC 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 366 CTTCCTGACATCTCCAAGGCTGTGAAAGAGCTCACTGTGCTTAAGGGCGTTGGTGCTGCC 425
Query 361 ACTGCCTCCGCCGTTCTGGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 420
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 ACCGCATCCGCCGTTCTTGCTGCTTACGCCCCTGACATTGCACCATTTATGTCCGACGAG 485
Query 421 GCAATGGAGGTGGCTCTCGGGAACTCAAAGGATTACTCTTTGAAGCAATACTTGTTGTTT 480
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 486 GCAATGGAGGTGGCTCTTGGGAACTCAAAGGATTACTCTTTGAAACAATACTTGTTGTTT 545
Query 481 GTAACTAAGCTACAAGATAAAGCCAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 540
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 546 GCAACTAAGCTACAAGATAAAGCAAAGGAATTAAAGTTGAAGGGAGAGTGGGATGGGCCT 605
Query 541 TCAGATGTTGAAAGAGCTCTATGGAGTTGTACTGTGAGTGCAAAGTCACAGCCAGAGAAG 600
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 606 TCAGATATTGAAAGAGCTCTATGGAGTTGTACTGTGCGTGCAAAGTCACAGCCAGAGAAG 665
Query 601 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCTAATTCACCTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 666 AGCTCTTCCGGGAAGAAAAGAAAACGGTAGGTGATAATATTTCTATCCAGTTCACCTTCC 725
Query 661 ATCCATTGTTAAGATCAACCATATGTCAGC 690
||||||| ||||||||||||||||||||||
Sbjct 726 ATCCATTTTTAAGATCAACCATATGTCAGC 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5