BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478588
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12260.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 1066 0.0
AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 58.4 9e-08
> AT3G12260.1 | Symbols: | LYR family of Fe/S cluster biogenesis
protein | chr3:3908940-3910420 REVERSE LENGTH=797
Length=797
Score = 1066 bits (577), Expect = 0.0
Identities = 634/662 (96%), Gaps = 2/662 (0%)
Strand=Plus/Plus
Query 1 GAAGGAAAAAATTCTCGATTGCGTAGGATCAAAATGGCGGCACCATTCACGTTGAGGAAA 60
||||| ||| || |||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 52 GAAGGTGAAATTTTTCGATTTCGTA-GATCAAAATGGCGGCACCATTCGCGTTGAGGAAA 110
Query 61 ATCGGTGTTCCACCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTATTCGATTTC 120
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 111 ATCGGTGTTCCTCCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTTTTCGATTTC 170
Query 121 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 230
Query 181 GTCGCGCCTTCTCAGCTCCGCTATGCAATCTCTGCTCAGATTCGGAATAACGCTCACATC 240
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 231 GTCGCTCCTTCTCAGCTCCGCTATGCTATCTCTGCTCAGATTCGGAATAACGCTCACATC 290
Query 241 ACCGACCCTAAGGTAATTGATCTTCTTATATTCAAGGGAATGGAAGAGCTGACTGACATA 300
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 291 ACCGATCCTAAGGTAATTGATCTTCTTATATTCAAAGGAATGGAAGAGCTGACTGACATT 350
Query 301 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 410
Query 361 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 470
Query 421 AGCAACTACTTCTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGGTT 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 471 AGCAACTACTTTTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGTTT 530
Query 481 ATGCTGCTTCAGTTCATGTTCAAGTTTCGCATAAGTCTTGCCAGTATTGTATTGTCGACT 540
||||||||||||||| || |||||||| ||||| ||||||||||||||||||| |||||
Sbjct 531 ATGCTGCTTCAGTTCTTGCTCAAGTTT-GCATATGTCTTGCCAGTATTGTATTCTCGACA 589
Query 541 TTTGGAAGAAATCTTCTTCCCGAAAATAATTAGATCTTTTCATTTGTACGAGTATTTTCT 600
|||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 590 TTTGGAAGAAGTCTTCTTCCTGGAAATAATTAGATCTTTTCATTTGTATGAGTATTTTCT 649
Query 601 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCATTATCTGTGACAG 660
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 650 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCTTTATGTGTGACAG 709
Query 661 TG 662
||
Sbjct 710 TG 711
> AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G49410.2);
Has 54 Blast hits to 54 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27798313-27799596
REVERSE LENGTH=736
Length=736
Score = 58.4 bits (31), Expect = 9e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 395 CTGATTTTCTCAAGAATTTCTACACCAGCAACTA 428
|||| |||||||||||||||||||||||||||||
Sbjct 668 CTGACTTTCTCAAGAATTTCTACACCAGCAACTA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5