BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478588 Length=662 Score E Sequences producing significant alignments: (Bits) Value AT3G12260.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 1066 0.0 AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 58.4 9e-08 > AT3G12260.1 | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr3:3908940-3910420 REVERSE LENGTH=797 Length=797 Score = 1066 bits (577), Expect = 0.0 Identities = 634/662 (96%), Gaps = 2/662 (0%) Strand=Plus/Plus Query 1 GAAGGAAAAAATTCTCGATTGCGTAGGATCAAAATGGCGGCACCATTCACGTTGAGGAAA 60 ||||| ||| || |||||| |||| |||||||||||||||||||||| ||||||||||| Sbjct 52 GAAGGTGAAATTTTTCGATTTCGTA-GATCAAAATGGCGGCACCATTCGCGTTGAGGAAA 110 Query 61 ATCGGTGTTCCACCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTATTCGATTTC 120 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 111 ATCGGTGTTCCTCCGAACTCGGCGAACCTGACGGAAGCTCGCCGCCGTGTTTTCGATTTC 170 Query 121 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 171 TTTAGAGCTGCCTGTAGATCTATCCCCACCATCATGGACATTTACAATCTTCAAGATGTC 230 Query 181 GTCGCGCCTTCTCAGCTCCGCTATGCAATCTCTGCTCAGATTCGGAATAACGCTCACATC 240 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 231 GTCGCTCCTTCTCAGCTCCGCTATGCTATCTCTGCTCAGATTCGGAATAACGCTCACATC 290 Query 241 ACCGACCCTAAGGTAATTGATCTTCTTATATTCAAGGGAATGGAAGAGCTGACTGACATA 300 ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 291 ACCGATCCTAAGGTAATTGATCTTCTTATATTCAAAGGAATGGAAGAGCTGACTGACATT 350 Query 301 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 GTGGATCACGCAAAGCAGCGTCACCACATCATCGGTCAATATGTGGTGGGTGAAGGGCTC 410 Query 361 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GTGCAGAATACTGGAAACAAGGATCAAGGAAAGACTGATTTTCTCAAGAATTTCTACACC 470 Query 421 AGCAACTACTTCTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGGTT 480 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 471 AGCAACTACTTTTGAACTGGTGATGTTTACTTTTCGAGTTTCACATAAGCTGTACTGTTT 530 Query 481 ATGCTGCTTCAGTTCATGTTCAAGTTTCGCATAAGTCTTGCCAGTATTGTATTGTCGACT 540 ||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||||| Sbjct 531 ATGCTGCTTCAGTTCTTGCTCAAGTTT-GCATATGTCTTGCCAGTATTGTATTCTCGACA 589 Query 541 TTTGGAAGAAATCTTCTTCCCGAAAATAATTAGATCTTTTCATTTGTACGAGTATTTTCT 600 |||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||| Sbjct 590 TTTGGAAGAAGTCTTCTTCCTGGAAATAATTAGATCTTTTCATTTGTATGAGTATTTTCT 649 Query 601 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCATTATCTGTGACAG 660 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 650 CTGACTCAGGTTGGTTATACATAGTATTAGCCAAACCTCTGTAAGCTTTATGTGTGACAG 709 Query 661 TG 662 || Sbjct 710 TG 711 > AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27798313-27799596 REVERSE LENGTH=736 Length=736 Score = 58.4 bits (31), Expect = 9e-08 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Minus Query 395 CTGATTTTCTCAAGAATTTCTACACCAGCAACTA 428 |||| ||||||||||||||||||||||||||||| Sbjct 668 CTGACTTTCTCAAGAATTTCTACACCAGCAACTA 635 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31999151639 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5