BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478591
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12290.1 | Symbols: | Amino acid dehydrogenase family prote... 1613 0.0
> AT3G12290.1 | Symbols: | Amino acid dehydrogenase family protein
| chr3:3919502-3921519 FORWARD LENGTH=1182
Length=1182
Score = 1613 bits (873), Expect = 0.0
Identities = 944/979 (96%), Gaps = 1/979 (0%)
Strand=Plus/Plus
Query 39 TCCTAGTGGATCATGGCGTCATCATCTGATCACACGGCAAAGATAATCGACGGAAAGGCG 98
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 78 TCCTAGTGGCTCATGGCGTCATCATCTGATCACACGGCGAAGATAATCGACGGCAAGGCG 137
Query 99 ATTGCTCATACCATCCGATCAGAGATCGCCGAGGAAGTTCGCGGTCTATCTGAGAAACAC 158
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATTGCTCATACCATCAGATCAGAGATCGCCGAGGAAGTTCGCGGTCTATCTGAGAAACAC 197
Query 159 GGCAAGGTCCCAGGACTAGCTGTAGTTATTGTTGGGAGCCGAAAGGATTCACAGACCTAT 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGCAAGGTCCCAGGACTAGCTGTAGTTATTGTTGGGAGCCGAAAGGATTCACAGACCTAT 257
Query 219 GTGAATACGAAGAGGAAAGCATGCGCTGAGGTTGGGATTAAGTCATTTGATGTGGGCCTA 278
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 258 GTGAATACGAAGAGGAAAGCGTGCGCTGAGGTTGGGATTAAGTCATTTGACGTGGGCCTA 317
Query 279 CCAGAGGAAGTTTCTGAAGCTGATCTTATAAGCAAAGTTCATGAACTAAATTCAAATCCG 338
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 318 CCAGAGGAAGTTTCTGAAGCTGATCTTATTAGCAAAGTTCATGAACTAAATTCAAATCCG 377
Query 339 GATGTCCATGGCATATTAGTTCAACTCCCATTGCCGAAACATATTAATGAGGAGAATGTT 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 378 GATGTCCATGGCATATTAGTTCAACTCCCATTGCCGAAACATATTAATGAGGAGCATATA 437
Query 399 TTGGGTGCAATCAGCATTGATAAAGATGTTGATGGCTTCCATCCTTTGAATATTGGTAAG 458
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 438 TTGGGTGCAATCAGCATTGATAAAGATGTCGATGGCTTCCATCCTTTGAATATTGGTAAG 497
Query 459 CTAGCCATGAAAGGCAGAGAACCCCTCTTCCTTCCTTGCACCCCAAAGGGATGCTTGGAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 498 CTAGCCATGAAAGGCAGAGAACCCCTCTTCCTTCCTTGCACCCCAAAGGGATGTTTGGAA 557
Query 519 CTCTTAGCGAGAAGTGGGGTAAAGATAAAGGGGCAACGAGCAGTTGTTGTAGGTCGGAGT 578
||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CTCCTAGCTAGAAGCGGCGTAAAGATAAAGGGGCAACGAGCAGTTGTTGTAGGTCGGAGT 617
Query 579 AATATCGTTGGTTTACCTGTTTCGCTTCTATTGCTCAAGGCTGATGCTACTGTTACAACT 638
|| || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 618 AACATTGTTGGTTTGCCCGTTTCACTTCTTTTGCTCAAGGCTGATGCTACTGTCACAACT 677
Query 639 GTACATTCTCACACCAAGGATCCTGAGGCTATCATACGGGAAGCTGACATCGTTATTGCT 698
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 678 GTACATTCTCACACCAAGGATCCTGAGGCTATCATACGGGAAGCTGACATTGTTATTGCT 737
Query 699 GCTTGCGGACAAGCCCACATGATTAAGGGCAACTGGATAAAGCCAGGGGCTGCGGTAATC 758
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 738 GCATGCGGACAAGCCCACATGATTAAGGGCAACTGGATAAAGCCAGGGGCTGCAGTAATT 797
Query 759 GATGTTGGAACTAACGCAGTCAGCGACCCGAGCAAGAAATCAGGATACCGGTTGGTTGGA 818
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 GATGTTGGAACTAATGCAGTCAGCGACCCGAGCAAGAAATCAGGATACCGGTTGGTTGGA 857
Query 819 GATGTCGATTTTGCAGAAGCTTCTAAAGTTGCAGGTTTCATAACTCCGGTCCCTGGTGGT 878
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 858 GATGTTGATTTCGCAGAAGCTTCAAAAGTTGCAGGTTTCATAACTCCGGTCCCTGGTGGT 917
Query 879 GTAGGCCCAATGACAGTGGCAATGCTTCTCAGGAACACCGTAGACGGTGCCAAGCGTGTC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GTAGGCCCAATGACAGTGGCAATGCTTCTCAGGAACACCGTAGACGGTGCCAAGCGTGTC 977
Query 939 TTTGGCGAGTAAAACTTTCTACTGTATGTAATAAAGAAACCA-GAGTTTCTCCATTCTGT 997
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 978 TTTGGCGAGTAAAACAATCTACTGTATGTAATAAAGAAACCAAGAGTTTCTCCATTCTGT 1037
Query 998 AATTGTGCACTTGGCTTGA 1016
||||||| |||||||||||
Sbjct 1038 AATTGTGTACTTGGCTTGA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5