BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478600
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12410.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1007 0.0
AT3G12460.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 174 1e-42
AT3G12420.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 102 5e-21
> AT3G12410.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:3946036-3946960 REVERSE
LENGTH=925
Length=925
Score = 1007 bits (545), Expect = 0.0
Identities = 657/710 (93%), Gaps = 12/710 (2%)
Strand=Plus/Plus
Query 1 AATGGCTTCTCCGACGATAAGAACCGTCGCAAGTTACAACACTCACCTAGAGTACTCCGT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATGGCTTCCCCGACGATAAGAACCGTCGCAAGTTACAACACTCACCTAGAGTACTCCGT 60
Query 61 CGATTTCTTTGGAGACGAGTTCATCGTCACCGTAAC-TCCGGATTCCTCCGTCATCAGCC 119
|||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 61 CGATTTCTTTGGAGACGAGTTCATCGTCACCGTAACGTG-GGATTCTTCCGTCATCAGCC 119
Query 120 GTTGGATTCGCGACGTCCTCTTTAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAG 179
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTGGATTCGCAACGTCCTCTTCAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAG 179
Query 180 TCGGCGTCCAGTGGACTCCTTTCTA-TTATTACGCCGATCCTCTGGA--GAATGACTACT 236
| |||||||||||||| || || || ||||||| ||||||| | | |||| ||||||
Sbjct 180 TTGGCGTCCAGTGGACACCGTT-TAGTTATTACTCCGATCCAA-G-ACCGAATAACTACT 236
Query 237 ACGCCGATGCTCCGGCTGGTA-GAAACTACTCAGATAATCCAGCGGATATTCTCCAGTTA 295
|||||||| ||||| | | || || |||||||||||||||||||||||||||||||||||
Sbjct 237 ACGCCGATCCTCCGCC-GATAAGATACTACTCAGATAATCCAGCGGATATTCTCCAGTTA 295
Query 296 TGCGTGGGTAATCGGTGTCTCATCATCCAGTTAGGTTACTGTGAGCAAGTCCCTAACAAT 355
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 296 TGCGTGGGTAATCGATGTCTCATCATCCAGTTAGGTTACTGTGACCAAGTACCTAACAAC 355
Query 356 CTCCGCAGTTTCTTAGGAGATCCAGAAACCACGTTCGTAGGCGTTTGGAATGGTCAAGAT 415
|||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct 356 CTCCGCAGTTTCTTAGCAGATCCAGAAACCACGTTCGTCGGTGTCTGGAATGGTCAAGAT 415
Query 416 GCAGGAAAGCTGGCTCGATGTTGCCACCAGCTGGAGATTGGGGAACTTCTTGACATAAGG 475
||||||||||| ||||| |||||||||||| ||||||| || |||||||| |||||||||
Sbjct 416 GCAGGAAAGCTTGCTCGGTGTTGCCACCAGTTGGAGATCGGAGAACTTCTGGACATAAGG 475
Query 476 CAGTACGTGAATGATTCGTGGGGAAGGAGCATGAGGCGTTGCT-CGTTTGCAGAGATTGT 534
| |||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 476 CGGTACGTGACTGATTCGTGGGGAAGGAGCATGAGGCGTT-CTTCGTTTGAAGAGATTGT 534
Query 535 TGAGGAATGTATGGGTTATCAAGGAGTGACGCTAGATCCGGAGATAAGCATGAGTGATTG 594
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 535 TGAGGAATGTATGGGCTATCAAGGAGTGATGCTAGATCCGGAGATAAGCATGAGCGATTG 594
Query 595 GACCGTTTATGACCTAGACCTTGATCAGATTCTTCAGGCGTCACTAGATGCTTACGTTTG 654
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACCGCTTACGATCTAGACCTTGATCAGATTCTTCAGGCGTCACTAGATGCTTACGTTTG 654
Query 655 CCATCAGCTTGGTGTTTGGGCTCGTCTTTGGGAAGTTTGAAAACAAGTAT 704
||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 655 CCATCAGCTTGGTGTTTGGACTCGTCTCTGGGAAGTTTGAAAACAAGTAT 704
> AT3G12460.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:3954695-3955423 REVERSE
LENGTH=729
Length=729
Score = 174 bits (94), Expect = 1e-42
Identities = 160/191 (84%), Gaps = 8/191 (4%)
Strand=Plus/Plus
Query 9 CTCCGACGATAAGAACCGTCGCAAGTTACAAC-ACTCA-CCTAGAGTACTCCGTCGATTT 66
||||||| || |||||| ||| | |||| | ||||| | || |||||| ||||||||
Sbjct 5 CTCCGACAATCAGAACCATCGGATCTTAC-GCTACTCAGCAAAG-GTACTCAGTCGATTT 62
Query 67 CTTTGGAGACGAG-TTCATCGTCACCGTAACTCCGGATTCC-TCCGTCATCAGCCGTTGG 124
||||||||| ||| || ||||||||||||| ||||| ||| ||||||||| ||| |||
Sbjct 63 CTTTGGAGAAGAGCTT-TTCGTCACCGTAACGCCGGA-TCCTTCCGTCATCGGCCAATGG 120
Query 125 ATTCGCGACGTCCTCTTTAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAGTCGGC 184
|||| ||||||| |||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 121 ATTCACGACGTCTTCTTCCACAACCGTCTCTCTTCTCACCCTCTCGTCGTTGGAGTCGGC 180
Query 185 GTCCAGTGGAC 195
|| ||||||||
Sbjct 181 GTTCAGTGGAC 191
> AT3G12420.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:3948014-3948882 REVERSE
LENGTH=558
Length=558
Score = 102 bits (55), Expect = 5e-21
Identities = 151/195 (77%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 12 CGACGATAAGAACCGTCGCAAGTTAC-A-AC-ACTCACCTAGAGTACTCCGTCGATTTCT 68
||||||||||||||| || ||||| | | ||||||| ||||||||| ||||| |||
Sbjct 8 CGACGATAAGAACCG--GC-GGTTACTACTCTACTCACCAAGAGTACTCTATCGATGTCT 64
Query 69 TTGGAGACGA-GTTCAT-CGTCACCGTAACTCCGGATTCCTCCGTCATCAGCCGTTGGAT 126
| ||| || | ||| || ||||||||||||| |||||| | || ||||||||| |||||
Sbjct 65 TCGGAAAC-ACGTT-ATCCGTCACCGTAACTTCGGATTTCGCCATCATCAGCCAATGGAT 122
Query 127 TCGCGACGTCCTCTTTAACAACCGT--TTC-T-C-CTCT-CACCCTCTCGTCGTTGGAGT 180
| || || | |||||| || | | | | ||| || |||||||||||||||||
Sbjct 123 CCATGAGGTTGAATACAACAACTGTCGTCCGTACTATCTACAACCTCTCGTCGTTGGAGT 182
Query 181 CGGCGTCCAGTGGAC 195
|||||||||||||||
Sbjct 183 CGGCGTCCAGTGGAC 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39684976130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5