BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478601

Length=982
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12420.1 | Symbols:  | Polynucleotidyl transferase, ribonucl...   401    5e-111


> AT3G12420.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease 
H-like superfamily protein | chr3:3948014-3948882 REVERSE 
LENGTH=558
Length=558

 Score =  401 bits (217),  Expect = 5e-111
 Identities = 274/301 (91%), Gaps = 5/301 (2%)
 Strand=Plus/Plus

Query  9    GACGATAAGAACCGGCGGTAACTACTCTACCCACCAAGAGTACTCTATCGATGTCTTTGG  68
            ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct  9    GACGATAAGAACCGGCGGTTACTACTCTACTCACCAAGAGTACTCTATCGATGTCTTCGG  68

Query  69   AAACGCGTTATCCGTCACCGTAACCTCGGATTTCGCCATCATCAGCCAATGGATCCGTGA  128
            |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct  69   AAACACGTTATCCGTCACCGTAACTTCGGATTTCGCCATCATCAGCCAATGGATCCATGA  128

Query  129  GGTCCTCTACAACAACTGTGGTCCGTACTATCCACAACCTCTCGTCGTTGGAGTCGGCGT  188
            |||    |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct  129  GGTTGAATACAACAACTGTCGTCCGTACTATCTACAACCTCTCGTCGTTGGAGTCGGCGT  188

Query  189  CCAGTGGACACCGCCACTAAGTTACGACGCTAATCCTCCATCGAATAGGTACTACTCCGA  248
            |||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||||
Sbjct  189  CCAGTGGACACCGCCAGTAAGTTACGACGCCAATCCTCCACCGGATAGGTACTACTCCGA  248

Query  249  TCAGC--C-ACTGCGTGGTTACGACGCC-AATCCTCCACCGAATAGGTATTACTCCGATC  304
            ||| |  | || |||| |||||||  || |||||||||||||||||||| ||||| ||||
Sbjct  249  TCATCATCCACCGCGTAGTTACGAT-CCTAATCCTCCACCGAATAGGTACTACTCGGATC  307

Query  305  A  305
            |
Sbjct  308  A  308


 Score =  285 bits (154),  Expect = 5e-76
 Identities = 190/207 (92%), Gaps = 3/207 (1%)
 Strand=Plus/Plus

Query  572  ATCCTCCTGCGGATACTCTCCAGTTATGCGTGGGTAACAAATGTATCATCATCCAGTTAG  631
            ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| 
Sbjct  320  ATCCTCCGGCGGATACTCTCCAGTTATGCGTGGGTAACCAATGTCTCATCATCCAGTTAT  379

Query  632  GCCACTGTGACCAAGTCCCTAATAGTCTCCGCACTTTCTTGACGGATCC-AGGACCACGT  690
            | |||||||||||||||||||  ||||| |||| ||||||||| ||||| |  |||||||
Sbjct  380  GTCACTGTGACCAAGTCCCTACCAGTCTGCGCAGTTTCTTGACCGATCCAAATACCACGT  439

Query  691  TCGTCGGCGTTTGGAATAGTCAAGACGCAAGAAAGCTGGCGATATCTAAACATCAGTT-G  749
            ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct  440  TCGTCGGCGTTTGGAATAGTCAAGACGCAGGAAAGCTGGCGAGATCTAAACATCAGTTAG  499

Query  750  CAGATCGGGAAACTTCTAGACATAAGG  776
             ||||||||||||||||||||||||||
Sbjct  500  -AGATCGGGAAACTTCTAGACATAAGG  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48074078679


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5