BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478602
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12470.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 804 0.0
> AT3G12470.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:3956057-3956827 REVERSE
LENGTH=771
Length=771
Score = 804 bits (435), Expect = 0.0
Identities = 657/760 (86%), Gaps = 32/760 (4%)
Strand=Plus/Plus
Query 1 AAGAAGAAGACAGATCAATGGCTCTGACGATCAAAACAATCGGAAGTTTCCGTACTCACC 60
|||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 26 AAGAAGAAGACAGATCAATGGCTCCGACGATCAAAAGAATCAGAAGTTTCCGTACTCACC 85
Query 61 AAAAACAC-TTGATCAATTTCTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTACT 119
|||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 86 AAAAACACTTTG-TCGATTTTTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTGCT 144
Query 120 ACCGTAATCCGCCGCTGGATTCGCAGCGTCCGCTCCTACAACCGTAATCACTCAGTGCAT 179
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 145 TCCGTTATCCGCCGCTGGATTCGTAGCGTCCGCTCCTACAACCGTAATCACTCGGTACAT 204
Query 180 CCTCTCGTC----G--TCGG-G---A-TCG-G--C-GTTCGTTCCGATCCAGATCCTTCG 224
||||||||| | |||| | | | | | | | | |||||||||||||||| |
Sbjct 205 CCTCTCGTCGTTGGAATCGGTGTTCAGTGGAGACCGGATAGTTCCGATCCAGATCCACCA 264
Query 225 CCAAAAACTCTCCAGTTATGCGTTGGTAGTCGCTGTCTCATCATCCAGTTAGGTGACTGT 284
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct 265 CCAAAAACTCTCCAGTTGTGCGTCGGTAGTCGCTGTCTCATCATCCAACTAGGTTACAAT 324
Query 285 TACTGTCTCCCCAACGTACTCCGAACTTTCCTCT-CCGACCCCAATACCACTTTTGTCGG 343
||| ||||||| || || ||||| |||||||| | |||| ||||| || ||||| |||||
Sbjct 325 TACGGTCTCCCAAAAGTCCTCCGCACTTTCCT-TGCCGATCCCAAAACGACTTTCGTCGG 383
Query 344 CGTCTGGAACGGCCAAGACCAGAGAAAACTCGCTACATGTAGGCATCAATTGGAGATCGG 403
||| ||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||
Sbjct 384 CGTTTGGAACGGCCAAGACCAGAAAAAACTCGAGAAATGTAGGCATCGAGTGGAGATCGG 443
Query 404 GAAGCTTCTAGACATAAGGCTGTACGTGATAGATTCGAGA-AGGATTGCGATGCGTTTTT 462
||||||||| ||||||||| ||| ||||| |||||||||| || | | |||| ||||||
Sbjct 444 GAAGCTTCTGGACATAAGGATGTTCGTGAGAGATTCGAGAGGGGCTAG-GATGTGTTTTT 502
Query 463 GTTCGTTTGAACAGATCGTGAAAGAGCGTTTGGGACGCGAAGGTGTGAGGTTAGATCCGG 522
|||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||
Sbjct 503 GTTCGTTTGAACAGATCGTGAAGGAGCGTTTGGGTCGCGTAGGAGTGAGGTTAGATCCGG 562
Query 523 CGATTTGTATGAGCGATTGGGGCGTTTACATGCTCAGCCATGATCAGGTACTTCAGGCGT 582
|||||||||||||||||||||||||||| | || | |||| ||||||||||||||||||
Sbjct 563 CGATTTGTATGAGCGATTGGGGCGTTTATAACCTTAACCATTATCAGGTACTTCAGGCGT 622
Query 583 CGATTGAGTCATGTGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGGGAACTTAAAA 642
|||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 623 CGATTGAGTCGTATGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGG-AACTTAAAA 681
Query 643 GTTGTAATGGTGTTGCTAATCTTGTGATTTGAACAAGTTGTTGTTCTTCACTCTTTATCA 702
|||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 682 GTTGC--TG------CTAATCTTGTGATTTGAATTTGTTGTTGTTCTTCTCTCTTTATCA 733
Query 703 AGACAATCAACGTCTTCTAATTCATAAAAGTTTTCGTGTT 742
| ||| | | ||||||||||||| ||||||||| ||||
Sbjct 734 AT-CAA-CGTCTTCTTCTAATTCATGAAAGTTTTCATGTT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5