BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478603
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11 ... 1857 0.0
> AT3G12480.1 | Symbols: NF-YC11 | nuclear factor Y, subunit C11
| chr3:3957777-3960472 FORWARD LENGTH=1364
Length=1364
Score = 1857 bits (1005), Expect = 0.0
Identities = 1211/1307 (93%), Gaps = 27/1307 (2%)
Strand=Plus/Plus
Query 1 TTTT-ATTTTTCGATCGCACGGAGATTGTAACAAGGAAACCGCCGTCGCCGGATCTGGTA 59
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 43 TTTTAATTTTTCCATCGCACGGAGATTGTAACAAGGAAACCGCCGTCGCCGGATCTGATA 102
Query 60 GTGAGCGTATCCATGAAGTAGACGACGAAGCAA-TTACTTTCTGATCTTAAAACGTAGTT 118
|| || ||||||||||||||| ||||||| || |||||||||||||||| |||| |||
Sbjct 103 GT--GCATATCCATGAAGTAGAAGACGAAGAAACTTACTTTCTGATCTTAGAACGGAGTA 160
Query 119 TTTGTACAGAAGATT--CG-CCCTCAATTTTTGATCTGAAGGGTTGGGTTTA-Ctttttt 174
| ||||||||||||| || ||||||||||||||||| |||||| ||||||| |||||||
Sbjct 161 TATGTACAGAAGATTCGCGTCCCTCAATTTTTGATCTCAAGGGTCGGGTTTACCTTTTTT 220
Query 175 t--tt-tt-tttttGGGTGG-TGTTGCGTTTTCTCATTCGACGGTTTCTGGA-TTGGGGA 228
| || || ||||| ||||| | |||||||||||||||||||| |||||||| |||||||
Sbjct 221 TCCTTCTTATTTTT-GGTGGCT-TTGCGTTTTCTCATTCGACGATTTCTGGATTTGGGGA 278
Query 229 TATCAAAACCATGAGGAAGAAGCTCGATACTCGGTTCCCAGCTGCTCGTATTAAAAAGAT 288
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 TTTCAAAACCATGAGGAAGAAGCTCGATACTCGGTTCCCAGCTGCTCGTATTAAAAAGAT 338
Query 289 TATGCAAGCTGATGAGGATGTTGGCAAGATAGCTTTGGCAGTGCCTGTCTTAGTCTCAAA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 TATGCAAGCTGATGAGGATGTTGGCAAGATAGCTTTGGCAGTGCCTGTCTTAGTCTCAAA 398
Query 349 ATCTTTGGAATTGTTCTTGCAAGACCTTTGCGATCGTACATATGAGATTACCCTTGAAAG 408
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 399 ATCTTTGGAGTTGTTCTTGCAAGACCTTTGTGATCGTACATATGAAATTACCCTTGAAAG 458
Query 409 AGGAGCCAAGACCGTCAGCTCATTGCACCTAAAACATTGTGTGGAAAGATATAACGTGTT 468
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AGGTGCCAAGACTGTGAGCTCATTGCACCTAAAACATTGTGTGGAAAGATATAACGTGTT 518
Query 469 TGATTTTCTGAGGGAAGTTGTGAGCAAGGTGCCTGACTATGGCCATTCGCAAGGGCAGGG 528
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 519 TGATTTTCTGAGGGAAGTTGTGAGTAAGGTGCCTGACTATGGCCATTCCCAAGGGCAAGG 578
Query 529 CCATGGTGATGTCACCATGGATGATCGCACCATCTCCAAGAGAAGGAAGCCCATCAGCGA 588
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 579 ACATGGTGATGTTACCATGGATGATCGCAGCATCTCCAAGAGAAGGAAGCCCATCAGCGA 638
Query 589 TGAAGTGAATGACAGCGACGAGGAATATAAGAAAAGCAAAACGCAAGAGAT-GGTGAATG 647
||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||
Sbjct 639 TGAAGTGAATGACAGTGACGAGGAATATAAGAAAAGCAAAACGCAAGAGATAGG-GAGTG 697
Query 648 CTAAGCCCAGTGGCAGGGGTGGTAGAGGAAGAGGGCGAGGAAGAGGTCGTGGTGGACGAG 707
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CTAAGACCAGTGGCAGGGGTGGTAGAGGAAGAGGGCGAGGAAGAGGTCGTGGTGGACGAG 757
Query 708 CTGCAAGAGCAGCCGAAAGAGAGGGTCCCAACCGCGAGATGGAACTAGAAGCTGCCATAT 767
|||||| |||||||||||||||||||| |||||||||||||||| ||||||| |||| ||
Sbjct 758 CTGCAAAAGCAGCCGAAAGAGAGGGTCTCAACCGCGAGATGGAAGTAGAAGCCGCCA-AT 816
Query 768 -CGGGACAGCCACCTCCAGAAGACAATATCAAGATGCATGTGTCAGAGTCATCACCACAA 826
| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 817 TCTGGACAGCCACCACCAGAAGACAATGTCAAGATGCATGCGTCAGAGTCATCACCACAA 876
Query 827 GAGAATGAGAAGAAAGACATTGATGGCACAGTAGCATCAAACGAAGACACCAAGCAACAC 886
||| |||||||||||| ||| || ||||||| |||||| |||||||||||||||||||||
Sbjct 877 GAGGATGAGAAGAAAGGCATCGACGGCACAGCAGCATCGAACGAAGACACCAAGCAACAC 936
Query 887 CTTCAAAGTCCAAAAGAAGGCATTGCCTTTGATCTCAACGCTGAATCCCTCGACCTAAAC 946
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 937 CTTCAAAGTCCCAAAGAAGGCATTGACTTTGATCTCAACGCTGAATCCCTCGACCTAAAC 996
Query 947 GAGACCAAACTGGCACCAACCACTGGCGCAACCACAACCGCA---GCAACAACGGACTCA 1003
|||||||||||||||||| |||| ||| ||||||||||| || ||| |||| |||||
Sbjct 997 GAGACCAAACTGGCACCAGCCACAGGCACAACCACAACCACAACTGCAGCAACAGACTCT 1056
Query 1004 GAGGAATATTCGGCCTGGCCTATGATGGACATAGGCAAAATGGATCCAGCACAGCTTGCC 1063
||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1057 GAGGAGTATTCGGGCTGGCCTATGATGGACATAAGCAAAATGGATCCAGCACAGCTTGCT 1116
Query 1064 AGTCTGGGTAAGAGGATAGACGAGGATGAGGAAGATTATGACGAAGAAGGTTAAGGCATA 1123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1117 AGTCTGGGTAAGAGGATAGACGAGGATGAGGAAGATTATGACGAAGAAGGCTAAGTCATA 1176
Query 1124 GCAGCACCT-TAGGATATATAGAGTAGCAGCATTTAGCGGTTTGTCTAGAAAATGCTTCT 1182
|||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1177 ACAGCAC-TATAGGATATATAGAGTAGCAGCGTTTAGCAGTTTGTCTAGAAAATGCTTCT 1235
Query 1183 TCTGTCTTCAAAATCTTCTTCTAGTTTCCATTTATTGTACGGACCAAAGATTGTATGCGC 1242
|||||| |||||||||||| || |||||||||||||||| | ||||||||||| |||| |
Sbjct 1236 TCTGTCATCAAAATCTTCTCCT-GTTTCCATTTATTGTATGAACCAAAGATTGCATGCAC 1294
Query 1243 TTTATGAAACTTAATTTTATTCTCCTGATATGTTATTTAAGGGTTTA 1289
| ||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1295 TCTATGAAACTTAATTT-ATTCTCCTGATTTGTTATTTAAGGTTTTA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63403288335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5