BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478610

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12545.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   204    6e-52


> AT3G12545.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:3977550-3978294 
REVERSE LENGTH=372
Length=372

 Score =  204 bits (110),  Expect = 6e-52
 Identities = 124/131 (95%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  277  ACCAAACTGCCGAGTTACTGTTGTGGAAGACTGGTAAAGCCACAACCATGTGCTTGTAAG  336
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct  241  ACCAAATTGCCGAGTTACTGTTGTGGAAGAATGGTAAAGCCACAACCATGTGCCTGCAAG  300

Query  337  TATTTTATTAAGAACCCTGTCCTCTTGCCCAGACTTCTCATTGCTTGTCGTGTTCCTCAT  396
            |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  301  TATTTTATCAAGAACCCTGTGCTCTTGCCCAGACTTCTAATTGCTTGTCGTGTTCCTCAT  360

Query  397  CCTAAGTGTTA  407
            |||||||||||
Sbjct  361  CCTAAGTGTTA  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5