BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478612
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12560.1 | Symbols: TRFL9, ATTBP2 | TRF-like 9 | chr3:398198... 3247 0.0
> AT3G12560.1 | Symbols: TRFL9, ATTBP2 | TRF-like 9 | chr3:3981983-3985550
REVERSE LENGTH=2436
Length=2436
Score = 3247 bits (1758), Expect = 0.0
Identities = 2191/2386 (92%), Gaps = 85/2386 (4%)
Strand=Plus/Plus
Query 1 ACGTCTTCTTCCTTCTCTCTTTTCTAAGGACAACGACGGATTCTTACCGCAACa-a-a-a 57
||||| |||||||||| |||||||||| |||||||||||||||||||||||||| | | |
Sbjct 1 ACGTCATCTTCCTTCTTTCTTTTCTAAAGACAACGACGGATTCTTACCGCAACACACACA 60
Query 58 aaaaaaaaaTAACTCGAGAATTCTTCATTTC-TTTAAATCTCAGAATCTCGAGTTTCTGT 116
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 61 AAAAAAAAATAACTCGAGAATTCTTCATTTCTTTTAAATCTTAGAATCTCGAGTTTTTGT 120
Query 117 ATAGATAGATGCTAATTTGT-CTTTGTACATTG--TTATACATA-A-AACAAAATTCAAA 171
||| || ||| ||||||| | |||||||||||| ||||| ||| | || || | ||||
Sbjct 121 ATAAATCGATTCTAATTTTTCCTTTGTACATTGTTTTATATATACATAA-AACACACAAA 179
Query 172 TCGGGTATGGGGAAATTTGGGTTTT-AGTTTGCGTGATCTGTAATAATAAGTGGTT--CG 228
|||||||||||| |||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 180 TCGGGTATGGGGGAATTTGGGTTTTAAGATAGCGTGATCTGTAATAATAAGTGGTTCGCG 239
Query 229 --C--GATCAAGAAAACTGGTGGCTGATAGTGATATGCATATTTGAGAGATGGTGTTCAA 284
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCGTGATCAAG-AAACTGGTGGCTGATAGTGATATGCATATTTGAGAGATGGTGTTCAA 298
Query 285 GAGGAAGTTAGATTG-----CC----GCTTTGATTTTCCCAATATTCCCAGGGCTCCTCG 335
||| ||||||||||| || | |||||||||||||| |||||||| ||||||||
Sbjct 299 GAGAAAGTTAGATTGCCTTTCCGTGGGATTTGATTTTCCCAACATTCCCAGAGCTCCTCG 358
Query 336 TTCATGCAGGAGGAAGG-TCATAAACAAGAGGATTG---ATGATGACGATGACACTCAGA 391
||||||||||||||||| || ||||||||||||||| ||||||| ||| |||||||||
Sbjct 359 TTCATGCAGGAGGAAGGTTC-TAAACAAGAGGATTGATCATGATGATGATAACACTCAGA 417
Query 392 TCTGTGCAATTGACTTACTAGCTTTGGCTGGAAAGATTCTACAGGAAAGCGAGAGTTCCT 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTGTGCAATTGACTTACTAGCTTTGGCTGGAAAGATTCTACAGGAAAGCGAGAGTTCCT 477
Query 452 CCGCCTCGTCCAATGCATTTGAAGGGAATAATCACGATAAAGAAATTAAACAAGAGCAAG 511
| || || || |||||||||||| | | ||| | ||| |||||| |||
Sbjct 478 CTGCGTCTTCTAATGCATTTGAA--G-A-AAT-----T-AAG--------CAAGAGAAAG 519
Query 512 AT-GATAAA-TGCAAGCCTGTTAAATCTGAGTCTTCTGACCAAGGAAACTCTGTGTCAAA 569
| || ||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 520 -TAGA-AAATTGCAAGACTATTAAATCTGAGTCTTCTGACCAAGGAAACTCTGTGTCAAA 577
Query 570 GCCTACTTATGAAATCTCTGCTGACAAGTGTGTGGTGAACA---GTTTTTCATTTCCGGA 626
|||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 578 GCCTACTTATGATATCTCTACTGAGAAGTGTGTGGTGAACAGTTGTTTTTCATTTCCGGA 637
Query 627 TAGTGACGGCGTTTTGGAGCGAACTCCGATGTCTGACTACAAGAAGATTCATGGTTTGAT 686
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 638 TAGTGACGGCGTTTTGGAGCGGACTCCGATGTCTGATTACAAGAAGATTCATGGTTTGAT 697
Query 687 GGA--CACGG-GTG---ATGTTAATGTGAATACTGGGTTTGAACAAGGAGAAGCTACTGA 740
||| | || ||| | ||||| |||| |||||| || ||||||||||| || ||
Sbjct 698 GGATGTAGGGTGTGAAAACAAGAATGTAAATAATGGGTTCGAGCAAGGAGAAGCAACCGA 757
Query 741 TTGCTTGGGAGATGGAGGCTTAATCACTGACACTTGCAACTTAGAGGATGCAACTGCGTT 800
| || |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 758 TCGCGTGGGTGATGGAGGCTTAGTCACTGATACTTGCAACTTAGAGGATGCAACTGCGTT 817
Query 801 AGGTGTGCAGTTTCCGAAATCAGTCTGTGTGGGTGGTGATCTAAAATCACCATCCAGCTT 860
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 818 AGGTCTGCAGTTTCCGAAATCAGTCTGTGTGGGTGGTGATTTAAAATCACCATCCACCTT 877
Query 861 GGATATGACCCCTAATGGTTCCTATGCTAGACATGGGAATCATACTAACCTAGGTAGAAG 920
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 878 GGATATGACCCCTAATGGTTCCTATGCTAGACATGGGAACCATACTAACCTAGGTAGAAA 937
Query 921 AGATGATGATGAAAATTTTTATAGTTACC-TGAAAGTTAGCAATAAATTTAAGTCGTATA 979
||||||||||||||| || |||||||||| | ||| ||||||||||||||||||||||||
Sbjct 938 AGATGATGATGAAAAATTCTATAGTTACCAT-AAACTTAGCAATAAATTTAAGTCGTATA 996
Query 980 GGTCTCCAACAATTCGAAGAATAAGAAAGTCGC-TGTCGTCCAAATACTGGAAACAAGTT 1038
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 997 GGTCTCCAACAATTCGAAGAATAAGAAAGTC-CATGTCGTCCAAATACTGGAAACAAGTT 1055
Query 1039 CCCAAAGATTTTGGACACAGTAGAGCTGATGTCGGTGTAAAGACTCTCTATCGCAAAAGA 1098
|| |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1056 CCAAAAGATTTTGGATACAGTAGAGCTGATGTGGGTGTGAAGACTCTTTATCGCAAAAGA 1115
Query 1099 AAATCATGTTATGGATACAATGCATGGCAGCGTGAGATCATTTATAAGAGAAGAAAG-TC 1157
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1116 AAATCATGTTATGGTTACAACGCATGGCAGCGTGAGATCATTTATAAGAGAAG-AAGATC 1174
Query 1158 ACCTGACAGAAGCTCGGTCGTAACTTCTGATGGAGGACTCAGTAGTGGAAGTGTTTCCAA 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 ACCTGACAGAAGCTCGGTCGTAACTTCTGATGGAGGACTCAGTAGTGGAAGTGTTTCCAA 1234
Query 1218 GGTACCCGAGAAGGGAGATACAGTAAAGCTAAGCATTAAGTCCTTTAGGATTCCAGAGCT 1277
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GTTACCCAAGAAGGGAGATACAGTAAAGCTAAGCATTAAGTCCTTTAGGATTCCAGAGCT 1294
Query 1278 TTTTATTGAAGTTCCAGAAACTGCAACAGTAGGATCACTAAAGAGGACGGTGATGGAGGC 1337
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1295 TTTTATTGAAGTTCCAGAAACTGCAACAGTAGGATCACTAAAGAGGACTGTGATGGAGGC 1354
Query 1338 TGTCAGTGTTTTACTCAGCGGAGGAATACGTGTTGGGGTATTAATGCATGGGAAGAAGGT 1397
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1355 TGTCAGTGTTTTACTCAGCGGAGGAATACGTGTTGGGGTGTTAATGCATGGGAAGAAGGT 1414
Query 1398 TAGAGATGACAGGAAAACTCTGTCACAGACTGGGATCTCATGTGATGAAATTTTAGACAA 1457
||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 1415 TAGAGATGAAAGGAAAACTCTGTCCCAGACTGGGATCTCATGTGATGAAAATCTAGACAA 1474
Query 1458 CCTTGGGTTCACCTTGGAGCCTGGTCCCAGCAAAGTTCCCCTACCTTTGTGTTCCGAAGA 1517
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1475 CCTTGGGTTCACCTTGGAGCCTAGTCCCAGCAAAGTTCCCCTACCTTTGTGTTCTGAAGA 1534
Query 1518 TCCTGCTGTGCCAACCGACCCTACGAGTTTGTCTGAACGGTCTGCGGCGTCTCCCATGTT 1577
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1535 TCCTGCTGTGCCAACCGACCCTACAAGTTTGTCTGAACGGTCTGCGGCGTCTCCTATGCT 1594
Query 1578 AGATTCTGGAATTCCCCATGCAGAGGACGTGATTAATTTAGGAAATATTGTGGACAGTAA 1637
||||||||||||||| |||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct 1595 AGATTCTGGAATTCCACATGCAGATGACGTGATTGATTCAAGAAATATTGTGGACAGTAA 1654
Query 1638 CCTCGAATTAGTTCCATATCAGGGGGACATATCTGTTGATGAACCTTCATCGGATTCAAA 1697
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1655 CCTCGAATTAGTTCCATATCAGGGTGACATATCTGTTGATGAACCTTCATCAGATTCAAA 1714
Query 1698 AGAGCTTGTTCCACTTCCAGCCTTGGAAGTTAAGGCGCTTGCCATAGTTCCGTTGAACCA 1757
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1715 AGAGCTTGTCCCACTTCCAGAGTTGGAAGTCAAGGCGCTTGCCATAGTTCCGTTGAACCA 1774
Query 1758 GAAACCTAAGCGTACTGAGCTTGCCCAGCGCAGAACCAGGAGACCCTTCTCTGTGACAGA 1817
||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||
Sbjct 1775 GAAACCTAAGCGTACTGAGCTAGCCCAGAGGAGAACTAGGAGACCCTTCTCTGTGACAGA 1834
Query 1818 GGTAGAAGCTCTTGTACAAGCAGTTGAGGAACTCGGGACTGGAAGATGGCGTGATGTGAA 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1835 GGTAGAAGCTCTTGTACAAGCAGTTGAGGAACTCGGGACTGGAAGATGGCGTGATGTAAA 1894
Query 1878 ATTGCGTGCTTTCGAGGATGCAGATCATCGGACTTACGTGGACTTGAAGGACAAATGGAA 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 ATTGCGTGCTTTCGAGGATGCAGATCATCGGACTTACGTGGACTTGAAGGACAAATGGAA 1954
Query 1938 GACGCTTGTTCACACAGCAAGTATATCACCGCAGCAACGAAGAGGAGAGCCTGTGCCACA 1997
|||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1955 GACGCTAGTTCACACAGCAAGTATATCCCCACAGCAACGAAGAGGAGAGCCGGTGCCACA 2014
Query 1998 AGAACTCCTAGACAGAGTCTTGAGGGCATACGGGTATTGGTCGCAGCACCAAGGAAAACA 2057
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015 AGAACTGCTAGACAGAGTCTTGAGGGCATACGGGTATTGGTCGCAGCACCAAGGAAAACA 2074
Query 2058 TCAGGCGAGAGGAGCATCCAAAGATCCAGAGATGAACAGAGGTAGAGCTCTTGAATCAGG 2117
||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 2075 TCAGGCGAGAGGAGCGTCCAAAGATCCAGACATGAACAGAGGTGGAGCTTTTGAATCAGG 2134
Query 2118 TGTTTCAGTGTaaaaaaaGGAGGTACGCATTGGTGGGTGGGTGTACAGAAGCAAACAACA 2177
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 TGTTTCAGTGTAAAAAA-GGAGGTACGCATTGGTGGGTGGGTGTACAGAAGCAAACAACA 2193
Query 2178 CAATAAATCGAAAACTCAATTTCTGCAAAGATTAATTGTCTTTATTTCTCGttttttttt 2237
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2194 CAATAAATGGACAACTCAATTTCTGCAAAGTTTAATTGTCTTTATTTCTCGTTTTTTTTT 2253
Query 2238 ttttt-t---t-CA-TT-------C-T-GCTTTGGCATCTGTAAATGACTCCAACTGGGA 2282
|| | | | || || | | ||||||||||||||||||||||||||||||||
Sbjct 2254 TTCTCCTACATACACTTTTTTTTTCCTTGCTTTGGCATCTGTAAATGACTCCAACTGGGA 2313
Query 2283 TGAGATTCGTCCCTAACCAAATTTTTAGGTTCTATCtttttttttt 2328
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2314 TGAGATTCGTCCCTAACCAAATTTTTAGGTTCTATCTTTGTTTTTT 2359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5