BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478613
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12570.1 | Symbols: FYD | FYD | chr3:3988743-3991052 FORWARD... 2536 0.0
> AT3G12570.1 | Symbols: FYD | FYD | chr3:3988743-3991052 FORWARD
LENGTH=1748
Length=1748
Score = 2536 bits (1373), Expect = 0.0
Identities = 1459/1502 (97%), Gaps = 0/1502 (0%)
Strand=Plus/Plus
Query 373 TGGAAGAAATATGGGTGAGACTCTCATCACCACCCTGTCTATGGAGAACTATCACCCGTC 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 TGGAAGAAATATGGGTGAGACTCTCATCACCACCCTGTCTATGGAGAACTATCACCCGTC 152
Query 433 AACACTACTATCCATGGATTCAGGTGCTTTTACTCATGAAGAATCTGAGAGGGATATAAA 492
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 153 AACACTGCTATCCATGGATTCAGGTGCTTTTACTCATGAAGAATCAGAGAGGGATATGAA 212
Query 493 TCGGTCGCTCCTACTTACTGGACCGCCTGATATTAATCTCCCACTCTCATCTGAAGCAAG 552
| |||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 213 TGGGTCTCTCATACTTACTGGACCGCCTGATATTAATCTACCACTCTCTTCTGAAGCTAG 272
Query 553 CCCATCTCTGCTTTTGTGGAACGAACACTGTGACATCTTAGACGTTGGACTCGGCCCTCA 612
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 273 GCCATCTCTGCTTTTGTGGAACGAACACTGTGACATCTTAGACGTTGGACTTGGACCTCA 332
Query 613 GCTATATGAGCCTGAGGCTGTTGTTCATGTGCCTAAGGTTGCTAAGAAGTACAACAAGCG 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GCTATATGAGCCTGAGGCTGTTGTTCATGTGCCTAAGGTTGCTAAGAAGTACAACAAGCG 392
Query 673 TGTTGATAGTGCATGGGGTGCTTGGCTTTTCTTCAGTTTCTACTTCAAACCTGTTTTGGA 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TGTTGATAGTGCATGGGGTGCTTGGCTTTTCTTCAGTTTCTACTTCAAACCTGTTTTGGA 452
Query 733 TGAGAAGTCCAAAAGTAAGTTAACGAGGGACAGCAATGGCTTGTCCGGGTATGATAAATC 792
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 453 TGAGAAGTCTAAAAGTAAGTTAACGAGGGACAGCAATGGCTTGTCTGGGTATGATAAATC 512
Query 793 TGATTTGCAGCTCGACTCCTTCTTGGTTCAGCATGACATGGAGAATATGTACATGTGGGT 852
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TGATTTGCAGCTCGACTCGTTCTTGGTTCAGCATGACATGGAGAATATGTACATGTGGGT 572
Query 853 GTTCAAGGAAAAGCCTGAAAATGCCCTTGGCAAGATGCAGCTGAGGAGTTACATGAACGG 912
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 573 GTTCAAGGAAAAGCCTGAAAATGCCCTTGGCAAGATGCAGCTGCGGAGCTACATGAACGG 632
Query 913 ACACTCACGTGAGGGTGAGCGTCCTTTCCCTTTTAGTGTGGACAAAGGTTTTGTCCGCTC 972
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 ACACTCACGCGAGGGTGAGCGTCCTTTCCCTTTTAGTGTGGACAAAGGTTTTGTCCGCTC 692
Query 973 TCATAGGATGCAGAGGAAACATTATCGTGGTCTCTCTAATCCACAGTGCCTCCATGGAAT 1032
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 693 TCATAGGATGCAGAGGAAACATTACCGTGGTCTCTCTAACCCACAGTGCCTCCATGGAAT 752
Query 1033 CGAGGTTGTTTATTCACCCAACCTTTCTGTACTCAACGAGGATGAAAAGAAGAAGTGGAC 1092
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 753 CGAAGTTGTTTATTCACCCAACCTTTCTGTACTCAGCGAGGATGAAAAGAAGAAGTGGAC 812
Query 1093 AGAACTCACAGGTCGAGATGTGAACTTTGCTATTCCAGCTGAAGCTAGTGATTACGGTTC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AGAACTCACAGGTCGAGATGTGAACTTTGCTATTCCAGCTGAAGCTAGTGATTACGGTTC 872
Query 1153 ATGGAGGAGTCTCCCAAACACCGAATTTGAGGCTGAGCGACCTCTTCCTCTGGCTAAAGC 1212
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 873 ATGGAGGAATCTCCCAAACACCGAATTTGAGGCTGAGAGACCTCTTCCTCTGGCTAAAGC 932
Query 1213 TAACGGGCACACCCACCTGAAAAAGCTGAACGGTACCTGTCTGAACCTGTCTACACATTC 1272
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 933 TAACGGGCACACCCACCTGAAAAAGCTGAATGGTACCTGTCTAAACCTGTCTACACATTC 992
Query 1273 CCCAGACCATGCAGTTGATACAGTGGAAGTTCAACCCGCTGGTAGCAATAAACGCAAAAG 1332
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 993 CCCAGACCATGCAGTTGATACAGTGGAAGTTCAACTCGCTGGTAGCAATAAACGCAAAAG 1052
Query 1333 GGATTGTCTTGCTCTAGGAAACTGTGATGACTCGAGCTCAAGTGAGAAATCTCTGGACAT 1392
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1053 GGATTGTCTTGCTCTAGGAAACTGCGATGACTCGAGCTCAAGTGAGAAATCTCTGGACAT 1112
Query 1393 GAAAATCCATGCAACAGAGCTACCTTGGTCAAATGATTTCAGTGGGGTGATGAAGAATGT 1452
||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1113 GAAAATCCATGCAACGGAGCTGCCTTGGTCAAATGATTTTAGCGGGGTGATGAAGAATGT 1172
Query 1453 GTACGGTCCAGTCACAGCCACAAAAACAATATATGAAGACGACAAAGGGTTCTTGATAGT 1512
||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1173 GTACGGTCCAGTCACAGCCGCAAAAACGATATATGAAGACGACAGAGGGTTCTTGATAGT 1232
Query 1513 TATGAGCCTGCCGTTTGTTGATTCGGGAAGGGTGAAAGTGACATGGAGGAATACACCAAC 1572
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1233 TATGAGCCTGCCATTTGTTGATTCCGGAAGGGTGAAAGTGACATGGAGGAATACACCAGC 1292
Query 1573 ACATGGAATAGTGAAGATATCATGTGTAAGTACAGCATGTGAGCCATTCATCAAGAGACA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 ACATGGAATAGTGAAGATATCATGTGTAAGTACAGCATGTGAGCCATTCATCAAGAGACA 1352
Query 1633 TGATAGAACATTTAAGCTAACAGATTCAACACCAGAGCATTGCCCACCGGGAGAATTTGT 1692
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1353 TGATAGAACATTTAAGCTAACAGATCCAACACCAGAGCATTGCCCACCGGGGGAATTTGT 1412
Query 1693 CCGCGAAGTCTCCCTGCCGAACAGGATTCCAGATGACGCGACGCTTGAAGCTTACCGGGA 1752
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1413 CCGCGAAGTCTCCCTGCCGAACAGGATTCCAGATGACGCCAAGCTTGAAGCTTACCGGGA 1472
Query 1753 CGAAACAGGAACAACGCTAGAGGTTTTAGTGCCTAAACACCGAATGGGACCAGAGGAGCA 1812
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 CGAAACAGGAACAACACTAGAGGTTTTAGTGCCTAAACACCGAATGGGACCAGAGGAGCA 1532
Query 1813 TGAGGTTCGCGTCTGTCTCCGTCCGTTCGTGCTAGAGTGAGATTGTAGCGCATAACTTCT 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TGAGGTTCGCGTCTGTCTCCGTCCGTTCGTGCTAGAGTGAGATTGTAGCGCATAACTTCT 1592
Query 1873 TA 1874
||
Sbjct 1593 TA 1594
Score = 130 bits (70), Expect = 5e-29
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 74 AAAATTTGGGATCATTTTGATAGGAGCGACTCTGTTCCTTCGCCGCCGATACTCACTCTT 133
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAA-TTGGGATCATTTTGATAGGAGCGACTCTGTTCCTTCGCCGCCGATACGCACTCTT 59
Query 134 CTTCATCGGATTTGATCCTC 153
|||||||||||||| |||||
Sbjct 60 CTTCATCGGATTTGTTCCTC 79
Score = 82.4 bits (44), Expect = 2e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1874 ATGTATCATTGGATTATTCATATTTAATAATATTTCCCCCATTTGATTGTGTTCTT 1929
|||||||||||||||||||||||||||| |||||| | |||||| |||||||||||
Sbjct 1612 ATGTATCATTGGATTATTCATATTTAATCATATTTACTCCATTTCATTGTGTTCTT 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5