BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478618
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12600.1 | Symbols: atnudt16, NUDT16 | nudix hydrolase homol... 1391 0.0
> AT3G12600.1 | Symbols: atnudt16, NUDT16 | nudix hydrolase homolog
16 | chr3:4004512-4006198 FORWARD LENGTH=1043
Length=1043
Score = 1391 bits (753), Expect = 0.0
Identities = 853/900 (95%), Gaps = 11/900 (1%)
Strand=Plus/Plus
Query 1 TTCTTTGTTGACCCACCCAACaaaaaaaacaaaaaaaaaaTACAAATCTGTATCTCTCAG 60
||||||||||||||||||||| || || |||||| |||||||||||||||||| | |
Sbjct 2 TTCTTTGTTGACCCACCCAAC--AACCAA-AAAAAATAAATACAAATCTGTATCT-GC-G 56
Query 61 TCTTTGATCCTAAATAGC--TAGAC--TCA-A-CCAAACCCTAGATCTAACCCCAGCCGT 114
|||||||||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 57 TCTTTGATCCTAAATAGCTATAGACAGACACACCCAAACCCTAGATCTAACCCCAGCCGT 116
Query 115 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATTAAGCAATGGTAGAGGTA 174
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATCAAGCAATGGTAGAGGTA 176
Query 175 GAATCGTATTTGTGGGTATCCAGAAGAGGCGTGAGGATTTTCTCGAAGCTGGGTGTTTTT 234
|||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||
Sbjct 177 GAATCGTATTTGTGGGTATCTAGAAGAGGCGTTAGGATTGTCTCCAAGCTGGGTGTTTTT 236
Query 235 TCATCTTGATGGCCAACAAATCGAATCTCCTCCTCTAAAGATATTTTTGTTTATTTCGGT 294
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 237 TCATCTTGATGGCCAACTAATCGAATCTCCTACTCTAAAGATATTTTTGTTTATTTCTGT 296
Query 295 GATGTGTGATTTGGTCGCGCGTACGGGTCGGCTCCAGCAGCGGTACGAGGATGGCTCTCG 354
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 CATGTGTGATTTGGTCGCGCGTACGGGTCGTCTCCAGCAGCGGTACGAGGATGGCTCTCG 356
Query 355 TCTCGTAGCCGGGTGTATTCCATTTAGGTATATAAATTCTGACAAAGATGGTAATTCTGA 414
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 357 TCTCGTCGCCGGGTGTATTCCGTTTAGGTATGTAAATTCTGACAAAGATGGTAATTCTGA 416
Query 415 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCGGGACTTTTGTT 474
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCTGGACTTTTGTT 476
Query 475 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGTGAGGGAAGCAGT 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGCGAGGGAAGCAGT 536
Query 535 GGAAGAAGCAGGTGTCCGTGGGATTCTAATGGATTTTTTGGGAAATTATGAGTTCAAGAG 594
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 537 GGAAGAAGCAGGAGTCCGTGGGATTCTTATGGATTTTTTGGGGAATTATGAGTTCAAGAG 596
Query 595 CAAAACACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCATT 654
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 CAAATCACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCGTT 656
Query 655 GTATGTGAAGGAAGAGCTAGAGACGTGGCCGGAACATGAGACGAGAACACGGAAATGGCT 714
||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 657 GTATGTGAAAGAAGAGCTAGCGACGTGGCCGGAACATGAGACGAGAACACGTAAATGGCT 716
Query 715 GACAATTGAAGAAGCGGTAGAGAATTGCAGGCACGCTTGGATGAAGGATGCATTGGTGGA 774
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 717 GACAATTGAAGAAGCGGTAGAGAGTTGCAGGCACCCTTGGATGAAGGACGCATTGGTGGA 776
Query 775 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACAAGTGAACA 834
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACTGGTGAACA 836
Query 835 TTGAAGCAAGTGTGCATAAACCTCTGAGGGTTGGTTTCATTTCTTTCGATTTTGTTTTTA 894
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 837 TTGAAGCAAATGTGCATAAACCTCTGAGCGTTGGTTTCATTCCTTTCGATTTTGTTTTTA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5