BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478619
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12610.1 | Symbols: DRT100 | Leucine-rich repeat (LRR) famil... 2061 0.0
> AT3G12610.1 | Symbols: DRT100 | Leucine-rich repeat (LRR) family
protein | chr3:4006399-4007807 REVERSE LENGTH=1409
Length=1409
Score = 2061 bits (1116), Expect = 0.0
Identities = 1292/1376 (94%), Gaps = 16/1376 (1%)
Strand=Plus/Plus
Query 1 ATATCAAACATTTATTTTAAAAATGAGAAAGTTGTTAGCATCGCCGTTTAGTTCATTACT 60
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 7 ATATCAAACATTTCTTTTAAAAATGAGAAAGTTGTTGGCATCGCCGTTTAGTTCATTACT 66
Query 61 CGCCGTAGTTTTCATTTCCGTCATCTCCGTCGTCCGATGCTGCTCTCCTGAAGATCAGAC 120
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 67 CGCCGTCGTTTTCATTTCCGTCATCTCCGTCGTCAGATGCTGCTCTCCTAAAGATCAGAC 126
Query 121 GGCTCTCAATGCTTTCAAGTCATCACTGAGCGAACCAAACCTAGGCATCTTTAACACTTG 180
||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 127 GGCTCTCAATGCTTTCAAGTCGTCACTGAGCGAACCAAACCTCGGTATCTTCAACACTTG 186
Query 181 GTCTGAAAACACTGACTGTTGCAAGGAATGGTACGGTATTAGCTGCGATCCTGATTCGGG 240
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 187 GTCTGAAAACACTGATTGTTGCAAGGAATGGTACGGTATCAGCTGCGATCCTGATTCGGG 246
Query 241 TCGGGTCACTGATATTTCTCTCCGGGGAGAATCTGAAGACGCCATTTTCCAAAAGGCAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TCGGGTCACTGATATTTCTCTCCGGGGAGAATCTGAAGACGCCATTTTCCAAAAGGCAGG 306
Query 301 CCGGTCCGGTTATATGTCCGGTTCGATTGATCCATCGGTTTGTGACTTAACCGCACTCAC 360
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 307 CCGGTCCGGTTATATGTCCGGTTCGATTGATCCAGCAGTTTGTGACTTAACCGCACTCAC 366
Query 361 TTCCCTCGTCCTCGCCGACTGGAAAGGAATCACCGGAGAGATTCCTCCGTGCGTAACCTC 420
||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 367 TTCCCTCGTTCTCGCCGACTGGAAAGGAATCACCGGAGAGATTCCTCCGTGCATTACTTC 426
Query 421 ATTGGCTTCTCTCCGTATCTTCGACCTCGCCGGCAACAAGATCACCGGAGG-GATTCCCG 479
| ||||| ||||||||| |||| ||||||||||||||||||||||| || ||||||||
Sbjct 427 CCTAGCTTCGCTCCGTATCCTCGATCTCGCCGGCAACAAGATCACCGG-GGAGATTCCCG 485
Query 480 CGGAAATCGGCAAACTCTCAAAACTCGCTGTTCTAAACCTCGCGGAGAATCAGATGTCCG 539
||||||||||||||||||| |||||||||||| |||||||||| |||||||| |||||||
Sbjct 486 CGGAAATCGGCAAACTCTCGAAACTCGCTGTTTTAAACCTCGCCGAGAATCAAATGTCCG 545
Query 540 GCGAGATTCCGTCGTTGCTGACGTCACTCGTCGAGTTGAAGCATCTTGAATTGACGGAAA 599
||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 546 GCGAGATTCCGGCGTCACTGACGTCACTCATCGAGTTGAAGCATCTTGAATTGACGGAAA 605
Query 600 ACGGAATCACCGGCGTGATCCCGGCCGACTTCGGATCGTTGAAGATGCTGAGCAGAGTTT 659
| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 606 ATGGAATCACCGGCGTGATCCCGGCCGATTTCGGATCGTTGAAGATGTTGAGCAGAGTTT 665
Query 660 TAATGGGCCGTAACGAGCTAACCGGGTCAATACCAGAGTCGATCTCGGGTATGGGACGGT 719
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 666 TACTGGGCCGTAACGAACTAACCGGGTCAATTCCAGAGTCGATCTCGGGTATGGAACGGT 725
Query 720 TAGTGGATCTGGATCTATCCAGGAACCATATCGAAGGTCCGATACCCGAATGGATGGGTA 779
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 726 TAGCGGATCTGGATCTATCCAAAAACCATATCGAAGGTCCGATACCCGAATGGATGGGTA 785
Query 780 ACATGAAGGTACTCTCACTTTTGAATCTCGATTGCAATTCGTTAACCGGTTCAATCCCCG 839
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 786 ACATGAAGGTACTCTCACTTTTGAATCTCGATTGCAATTCGTTAACCGGTCCAATCCCCG 845
Query 840 GTTCGCTTCTTAGCAATTCCGGTTTAGATGTTGCGAATTTGAGCAGAAATGCGTTGGAAG 899
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 846 GTTCGCTTCTTAGCAATTCCGGTTTAGATGTTGCCAATTTGAGCCGAAATGCGTTGGAAG 905
Query 900 GATCTATACCCGACGTTTTCGGGTCAAAAACGTATTTAGTTTCGCTTGATTTGTCCCACA 959
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 906 GAACTATACCCGACGTTTTCGGGTCAAAAACGTATTTAGTTTCGCTTGATCTGTCACACA 965
Query 960 ATAATCTATCGGGTCGGATCCCGGATTCGTTGTCGTCAGCTAAGTTTGTGGGACATTTGG 1019
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 ATAGTCTATCGGGTCGGATCCCGGATTCGTTGTCGTCAGCTAAGTTTGTGGGACATTTGG 1025
Query 1020 ATATTAGCCATAACAAGCTTTGTGGGCGTATCCCAACGGGTTCTCCTTTTGATCACCTTG 1079
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1026 ATATTAGCCATAACAAGCTTTGTGGGCGTATTCCAACGGGTTTTCCTTTTGATCACCTTG 1085
Query 1080 AAGCCACGTCGTTTAGTGACAACCAATGTCTCTGCGGTGGCCCTTTGATGACGTTATGTT 1139
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1086 AAGCTACGTCGTTTAGTGACAACCAATGTCTCTGCGGTGGCCCTTTGACGACGTCATGTT 1145
Query 1140 AATAACAAGGATATGGTTCC-GGTTTTACTGAACCGGGTT-T-CTTGTTGCTGTTGCTCT 1196
|||||||||||||||||| | ||||||||||||||||||| | ||| |||||||||||||
Sbjct 1146 AATAACAAGGATATGGTTTCTGGTTTTACTGAACCGGGTTATTCTTTTTGCTGTTGCTCT 1205
Query 1197 TGTTCGCTGTATCAAACTTGTGATATTTTACTTTTCATTTA--C-T-TTTCAGATTTTAG 1252
|||||| |||||||||||||||||||||| |||||||||| | | |||||||||||||
Sbjct 1206 TGTTCGTTGTATCAAACTTGTGATATTTTGCTTTTCATTTCTTCGTCTTTCAGATTTTAG 1265
Query 1253 TTT-TCACAGCTAATATATGTTCTACTACTGGCAACGGACAGGTACACCGATCCAATATG 1311
||| | | |||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1266 TTTCTAA-AGCTAAGATATGTT--ACT---GGCAACGGACAGGTACACCGATCCAATATG 1319
Query 1312 CTTTGCGGTTTATGTAAAATGATTCCGAATGTAATATTAAAAGCAACGTTATAGAA 1367
|||||||| |||||| ||||| |||| |||||| || |||||||| |||||||||
Sbjct 1320 GTTTGCGGTCTATGTACAATGAATCCGGATGTAAAATCAAAAGCAATGTTATAGAA 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5