BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478621
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12620.1 | Symbols: | Protein phosphatase 2C family protein... 2610 0.0
AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein... 176 6e-43
> AT3G12620.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:4009275-4011399 REVERSE LENGTH=1711
Length=1711
Score = 2610 bits (1413), Expect = 0.0
Identities = 1628/1726 (94%), Gaps = 38/1726 (2%)
Strand=Plus/Plus
Query 1 TAAGAGAAATCGAACCCCCAAATAAGGAAATTCTGACAGAGTCGCCTGCTAGATTTGttt 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4 TAAGAGAAATCGAACCCCCAAATAAGG-AATTCTGACAGAGTCGCCTGCTAGATTTG--- 59
Query 61 tttttttttCTCTTTCTCGTCATCTCTCTTCCTCTCTGTAA-CCCAACCGGAGTTACGAT 119
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 -TTTTCTTTCTC--TCTCGTCATCTCTCTTCCTCTCTGTAATCCCAACCGGAGTTACGAT 116
Query 120 TCCCTCTTATCGTAACTCCTGCTTCCGATCTCGATCCACTTTCCAGTTTTGTTTTGT-CG 178
||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 117 TCCTTCTTATCGTAACTCCTGCTTCCGATCTCGATCCAATTTTCACTTTTGTTTTGTCCG 176
Query 179 GACGGT-AATCATTTCCCGGCTCtttttttGTTTTAGGGAAGGAGGAATAAGC-AA---- 232
||||| ||||||||| ||||| ||||||| ||| |||||||||||||||||| ||
Sbjct 177 AACGGTAAATCATTTCGCGGCT-TTTTTTT-TTTAAGGGAAGGAGGAATAAGCAAATTTT 234
Query 233 -A----A-t---tttttttGGGGGTGTTAGTGATCTTATAGATGAAGTaaaaaaaaaTTT 283
| | | ||||||||||||||||||||||||| |||||||||| ||| ||| |||
Sbjct 235 GATTTGATTCCGTTTTTTTGGGGGTGTTAGTGATCTTTTAGATGAAGT-AAAGAAATTTT 293
Query 284 GATTATTGAGGGGATTATGTGAGTTATGGTATCATCGGCAACTATTTTGCGGATGGTAGC 343
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 GATTATTGAGGGGATTATGTGAGTTATGGTATCATCGGCAACTATATTGCGGATGGTAGC 353
Query 344 ACCATGTTGGAGGCGACCTTCTGTCAAGGGAGATCATTCTACTAGAAATGACGCTAATGG 403
|||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||
Sbjct 354 ACCATGTTGGAGGCGACCTTCTGTTAAAGGAGATCATTCTACTAG--A-GACGCTAATGG 410
Query 404 TCGATGTGATGGTCTTCTTTGGTATAAAGATTCTGGTAACCATGTTGCTGGAGAGTTCTC 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCGATGTGATGGTCTTCTTTGGTATAAAGATTCTGGTAACCATGTTGCTGGAGAGTTCTC 470
Query 464 TATGTCTGTCATTCAAGCCAATAATCTTCTTGAAGATCATAGCAAGCTTGAGTCTGGACC 523
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 TATGTCTGTTATTCAAGCTAATAATCTTCTCGAAGATCATAGCAAGCTTGAGTCTGGACC 530
Query 524 CGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTCTATGATGGTCATGG 583
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 531 TGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTTTATGATGGTCATGG 590
Query 584 AGGTCCTGAAGCTGCCCGTTTTGTTAATAAACACCTCTTCGATAACATCAGGAAGTTTAC 643
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 591 TGGTCCTGAAGCTGCCCGTTTCGTTAATAAACACCTCTTCGACAACATCAGGAAGTTTAC 650
Query 644 ATCAGAGAATCATGGAATGTCTGCCAATGTTATAACTAAAGCGTTTTTAGCTACGGAAGA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ATCAGAGAATCATGGAATGTCTGCCAATGTTATAACTAAAGCGTTTTTAGCTACGGAAGA 710
Query 704 AGATTTTCTTTCTCTTGTGCGGCGGCAGTGGCAGATTAAACCACAGATTGCTTCTGTTGG 763
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGATTTTCTTTCTCTTGTCCGGCGGCAGTGGCAGATTAAACCACAGATTGCTTCTGTTGG 770
Query 764 AGCATGTTGTCTGGTAGGGATCATATGTAGTGGATTGTTGTATATTGCAAACGCTGGAGA 823
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGCTTGTTGTCTGGTAGGGATCATATGTAGTGGATTGTTGTATATTGCAAACGCTGGAGA 830
Query 824 TTCTCGGGTTGTGCTAGGAAGATTGGAAAAAGCGTTTAAAATTGTCAAGGCCGTTCAGTT 883
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 831 TTCTCGGGTTGTGCTAGGAAGACTGGAAAAAGCGTTTAAAATTGTCAAGGCCGTTCAGTT 890
Query 884 ATCGTCTGAGCACAATGCAAGTCTTGAATCTGTGAGAGAGGAGTTGCGCTCGTTGCATCC 943
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATCGTCTGAGCATAATGCAAGTCTTGAATCTGTGAGAGAGGAGTTGCGCTCGTTGCATCC 950
Query 944 AAATGATCCTCAGATTGTTGTCTTGAAGCACAAAGTTTGGCGAGTCAAAGGTATTATACA 1003
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 AAATGATCCTCAGATTGTGGTCTTGAAGCACAAAGTTTGGCGTGTCAAAGGTATTATACA 1010
Query 1004 GGTTTCACGGTCGATTGGTGATGCCTACTTAAAGAAAGCAGAATTCAACCAGGAACCGTT 1063
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1011 GGTTTCACGGTCGATTGGTGATGCATACTTAAAGAAAGCAGAATTCAACCGGGAACCATT 1070
Query 1064 GTTGGCAAAGTTCAGAGTCCCCGAGGTTTTCCATACGCCCATCCTTAGAGCAGAGCCAGC 1123
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 1071 GTTGGCAAAGTTCAGGGTCCCTGAGGTTTTCCATAAGCCCATCCTTAGAGCAGAGCCGGC 1130
Query 1124 AATTACAGTACACAAAATCCATCCAGAGGATCAGTTTCTGATATTTGCATCAGACGGCTT 1183
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1131 AATTACAGTACACAAAATCCATCCAGAAGATCAGTTTCTTATATTTGCATCAGACGGCTT 1190
Query 1184 GTGGGAGCACTTAACCAATCAAGAAGCTGTTGACATTGTGAACACATGCCCACGCAATGG 1243
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1191 GTGGGAGCACTTGTCCAATCAAGAAGCTGTTGACATTGTGAACACATGCCCGCGCAATGG 1250
Query 1244 GATTGCAAGGAAGCTAATAAAAACAGCTCTAAGAGAGGCAGCAAAGAAGAGAGAGATGAG 1303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GATTGCAAGGAAGCTCATAAAAACAGCTCTAAGAGAGGCAGCAAAGAAGAGAGAGATGAG 1310
Query 1304 ATATTCGGATCTAAAAAAGATCGATAGAGGAGTGAGGAGACATTTTCATGATGATATAAC 1363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1311 ATATTCGGATCTAAAAAAGATCGATAGAGGAGTGCGGAGACATTTTCATGATGATATAAC 1370
Query 1364 AGTCATAGTTGTGTTTCTTGATTCACATCTCGTCAGTCGGAGTACCTCACGCCGACCTCT 1423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1371 AGTCATAGTTGTGTTTCTTGATTCACATCTCGTCAGTCGCAGTACCTCACGCCGACCTCT 1430
Query 1424 CATCTCCATTTCAGGTGGTGGTGACTTGGCTGGACCTTCCACTTGACTCAACTCTCACCA 1483
| ||||||| |||||||||||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 1431 CCTCTCCATCTCAGGTGGTGGTGATTTAGCTGGACCTTCTACTTGACTCTACTCTCACCA 1490
Query 1484 CAATCtatatatattttttatatacattatccactatatatatataAACACATTGCAAAG 1543
|| ||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1491 CA-TCTATATATATCTTATATATACATTATCCACTATATATA-A-AAACACATTGCAAAA 1547
Query 1544 CGCAATTCAAGTCCCTTCTTATTTTTT--CTCTATATA-AAAAATTTCCTTTTTAACTCT 1600
|||||||||||| ||||||| |||||| ||||||||| ||||||||||| || ||||||
Sbjct 1548 CGCAATTCAAGTTCCTTCTTTTTTTTTTTCTCTATATATAAAAATTTCCTCTT-AACTCT 1606
Query 1601 GCTTTTTATTCATCCCaaaaaaaaaTTGAAGAGTTGGAATCCAATGTATAGGTCTTTTGG 1660
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1607 GTTTTTTATTCATCCCAAAAAAAAAT-GAAGAGTTGAAATCCAATGTATAGGTCTTTTGG 1665
Query 1661 CAAACTGAGTTTATTATGGATAATATAAATAGATGTCATTTGTTGG 1706
||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1666 CAAACTGAGTTTATTATGGATAATATAAAGAGATATCACTTGTTGG 1711
> AT5G66080.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:26423419-26425406 REVERSE LENGTH=1691
Length=1691
Score = 176 bits (95), Expect = 6e-43
Identities = 341/457 (75%), Gaps = 28/457 (6%)
Strand=Plus/Plus
Query 912 TCTGTGAGAG-AGGAGTTGCGCTCGTTGCATCCAAATGA-TCCTCAGATTGTTGTCTTGA 969
|||||||| | |||| ||| ||| || || || |||| ||| || ||||| ||||| |
Sbjct 973 TCTGTGAG-GCAGGAAATGCACTCCTTACACCCTGATGACTCC-CATATTGTCGTCTTAA 1030
Query 970 AGCACAAAGTTTGGCGAGTCAAAGGTATTATACAGGTTTCACGGTCGATTGGTGATGCCT 1029
| ||||| || ||||| || || || ||||| ||||| ||||| || || || || | |
Sbjct 1031 AACACAATGTCTGGCGTGTTAAGGGCATTATTCAGGTATCACGATCCATAGGAGACGTGT 1090
Query 1030 A-CTTAAAGAAAGCAGAATTCAACCAGGAACCGTTGTTGGCAAAGTTCAGAGTCCCCGAG 1088
| ||| |||||| | || |||||| ||||||| |||| |||||| | || | | |||
Sbjct 1091 ATCTT-AAGAAATCGGAGTTCAACAAGGAACCTTTGTACACAAAGTACCGATTGCGGGAG 1149
Query 1089 GTTTTCCATACG-CCCATCCTTAGAG--CAGAGCCAG-CAATTACAGTACACAAAATCCA 1144
| | | | || || ||| ||| || || | | || || || || | ||||
Sbjct 1150 CCAAT-GAAAAGACCTAT-CTT-GAGTTGGGAACC-GTCGATAACCGTGCATGATCTCCA 1205
Query 1145 TCCAGAGGATCAGTTTCTGATATTTGCATCAGACGG-CTTGTGGGAGCA-CTTAACCAAT 1202
||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| | ||
Sbjct 1206 ACCAGACGATCAGTTTCTGATATTTGCATCAGACGGACTT-TGGGAGCAGCTTAGC-AAC 1263
Query 1203 CAAGAAGCTGTTGACATTGT---GAACACATGCCCACGCAATGGGATTGCAAGGA-AGCT 1258
||||| |||||||| || || |||| || |||| | || ||||| || |||| | ||
Sbjct 1264 CAAGAGGCTGTTGAAATCGTTCAGAAC-CA--CCCAAGAAACGGGATAGCGAGGAGA-CT 1319
Query 1259 AATAAAAACAGCTCTA-AGAGAGGCAGCAAAGAAGAGAGAGATGAGATATTCGGATCTAA 1317
| ||| | || || || |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1320 GGTGAAAGCTGCGCTGCAG-GAGGCAGCAAAGAAAAGAGAGATGAGATATTCTGATCTCA 1378
Query 1318 AAAAGATCGATAGAGGAGTGAGGAGACATTTTCATGA 1354
| ||||| || |||||||| ||||| ||||| |||||
Sbjct 1379 ACAAGATTGAGAGAGGAGTCAGGAGGCATTTCCATGA 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5