BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478624
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1179 0.0
> AT3G12650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 31 Blast hits
to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:4017830-4018631 REVERSE
LENGTH=802
Length=802
Score = 1179 bits (638), Expect = 0.0
Identities = 717/755 (95%), Gaps = 5/755 (1%)
Strand=Plus/Plus
Query 1 GAGCTTCTTCTCTGTATCGAATTCGGCGACGAAGATGATGATCTCTCGTCGATTGGTTTC 60
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAGCTTCTTCTCTGCATCGAAATCGGCGACGACGATGATGATCTCTCGTCGATTGGTTTC 60
Query 61 TAAATTCCTTAAACCCTTGTCATCTCCATCTTTCCATGTTTCTCGCCGTCATCTCCAATC 120
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 61 AAAATTCCTTAAACCCTTGTCTTCTCCATCTTTCCACGTCTCTCGCCGTCATCTCCAATC 120
Query 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTCAGGAGCTTGGTCT 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTAAGGAGCTTGGTCT 180
Query 181 CTTAAGATCATTTTCTGCTTTCAATATCGACAAGCTTCGATCTGAAACATGGTCACCGAG 240
||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 181 CTTAAGATCCTTTTCTGTTTTCAATATCGACAAACTTAGATCTGAAACATGGTCACCGAG 240
Query 241 GTATTTCTCGACTCCAAGCGGAGAGACCGAGCCCAAGAAGCCAGCAGAGGAGTCGAAGCC 300
|||||||||||| |||||||||||||||||||| |||||||||| || | | ||||||
Sbjct 241 GTATTTCTCGACACCAAGCGGAGAGACCGAGCCGAAGAAGCCAG-AG-GAA-TCGAAGGA 297
Query 301 AGAGGAGCTGCCGAAGATGAAGCACCAGGAGATCGAAGGACCAACAGTGGAACGCGATTT 360
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 AGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCGAAGGACCAACTGTGGAACGCGATTT 357
Query 361 GTCGGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAACATGTATAG 420
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 GTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAATATGTATAG 417
Query 421 TTTGAGTGGAGCCATGGGTGCTCTTGG-TTTAACTCAGTTGATTCTTGGAGCAGCGATTT 479
| | |||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||
Sbjct 418 TCTAAGTGGAGCTATGGGTGCT-TTGGGTTTAACTCAATTGATTCTTGGAGCGGCGATTT 476
Query 480 TGTACGCGACTCGATCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 539
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TATACGCCACTCGAGCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 536
Query 540 GATTCCCGTTTGCGATGGCGTTGATGGTGAGACGATCGTTGAAGCCAATGTACTTCTTCA 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 GATTCCCGTTTGCGATGGCGTTGATGGTGAGAAGATCGTTGAAGCCAATGTACTTCTTCA 596
Query 600 AGAAGATGGAAGAGTTAGGTAGGTTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 597 AGAAGATGGAAGAGTTAGGTAGGCTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 656
Query 660 ATCTCAATTTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATCTCAATCTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 716
Query 720 GTTTCGGAAACTTGTTCCTCTTGTTATCACCATGA 754
||||||| |||||||||||||||||||||||||||
Sbjct 717 GTTTCGGTAACTTGTTCCTCTTGTTATCACCATGA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5