BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478625
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12660.1 | Symbols: FLA14 | FASCICLIN-like arabinogalactan p... 1188 0.0
> AT3G12660.1 | Symbols: FLA14 | FASCICLIN-like arabinogalactan
protein 14 precursor | chr3:4019060-4019827 FORWARD LENGTH=768
Length=768
Score = 1188 bits (643), Expect = 0.0
Identities = 721/758 (95%), Gaps = 7/758 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTCACTTACAATCTTCTTCTTC---TTTGCTTCCACATTCCTCTACACTTCA 57
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTTCACTTACAATCTTCTTCTTCTTTTTTGCTTCCACATTCCTCTACACTTCA 60
Query 58 TCAAATTCATTCAACATCACTAACATCTTAAACGAGCATGATGATTTCTCAACTTTCAAC 117
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 61 TCAAATTCATTCAACATCACTAACATCTTAAACGAGCACGATGATTTCTCAAATTTCAAC 120
Query 118 CAGCTTCTCTCCGAAACTCAGCTCGCTTCTACCATCAACAAACGTCAAACCATAACCGTC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGCTTCTCTCCGAAACTCAGCTCGCTTCTACCATCAACAAACGTCAAACCATAACCGTC 180
Query 178 CTTGTGGTTTCCAACGGCGCACTCTCCTCTCTCTCCGGCCAACCAACCGCCGTTATCAAG 237
||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 181 CTTGTGGTTTCCAACGGTGCACTCTCCTCTCTCTCTGGCCAACCAACCTCCGTCATCAAG 240
Query 238 AAAATCCTTAGCCTCCACATCGTTTTAGATTACTATGACCAGAAGAAACTCAACAATCTG 297
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 AAAATCCTTAGCCTTCACATTGTTTTAGATTACTACGACCAGAAGAAACTCAAGAATCTG 300
Query 298 AGCAAGAAATCAGTACTCCTCACCACTCTTTTCCAATCTAGCGGCCTAGCCAGAGGCCAG 357
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AGCAAGAAAACAGTACTCCTCACCACTCTTTTCCAATCTAGCGGTCTAGCCAGAGGCCAA 360
Query 358 CAAGGGTTCTTGAACGCAACCGTTACGAAAGACGGAGACGTGGCGTTTGGATCTGCGGTT 417
||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 361 CAAGGGTTCTTGAACGCAACCGTTATGAAAAACGGAGACGTGGCGTTTGGTTCTGCGGTT 420
Query 418 CCTGGGTCTAGCCTTGATGCTCAGCTTCAAGACACTGTAGC-GTCACTACCATTTAACAT 476
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 421 CCTGGGTCTAGCCTTGATGCTCAGCTTCAAGACACTGTAGCAG-CACTACCGTTTAACAT 479
Query 477 CTCGGTGCTTCATATTAGTAGTGCTATAATGATTGATGTTAAAGGTGATAATGCACCTAC 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCTGTGCTTCATATTAGTAGTGCTATAATGATTGATGTTAAAGGTGATAATGCACCTAC 539
Query 537 TGCTTCTCCTTTGTCACCGGTATCATCTCCACCGCGCCCTGCAGAATCACCTAAGGATGA 596
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 540 TGCTTCTCCTTTGTCACCGGTATCATCTCCACCACGCCCTGCAGAATCACCTAATGATGA 599
Query 597 TGGTCATGATTTTGACGAGCCACCATCCTCTGCTCCTGATGCTGCTGCTGATGGACCTTC 656
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 TGGTCAAGATTTTGACGAGCCACCATCCTCTGCTCCTGGTGCTGCTGCTGATGAACCTTC 659
Query 657 CGAAAACGCCGGCTCAGCCAATGGAGTTTCAAGGATCGATTCTCAGCCTGCGTTCACGTT 716
|||||||||||||||||| |||||||||||||| | |||||||||||| || ||| ||||
Sbjct 660 CGAAAACGCCGGCTCAGCTAATGGAGTTTCAAGAAACGATTCTCAGCCCGCTTTCGCGTT 719
Query 717 TCCGCTGTTGATGTC-TTCCATTTGGTGGTTCATGGCT 753
| ||||||||||||| ||| ||||||||||||||||||
Sbjct 720 TACGCTGTTGATGTCATTC-ATTTGGTGGTTCATGGCT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5