BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478627
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12680.1 | Symbols: HUA1 | floral homeotic protein (HUA1) | ... 2793 0.0
> AT3G12680.1 | Symbols: HUA1 | floral homeotic protein (HUA1)
| chr3:4025076-4029140 REVERSE LENGTH=1916
Length=1916
Score = 2793 bits (1512), Expect = 0.0
Identities = 1751/1861 (94%), Gaps = 37/1861 (2%)
Strand=Plus/Plus
Query 1 GTAAACCCCACAAACACAACAA-TTTGATAA----TTTGACACC-AAAAAGTAGAAAGC- 53
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 52 GTAAACCCCACAAACACAACAATTTTGATAATTTGTTTGACACCAAAAAAGTAGAAAGCT 111
Query 54 -TTTCCTTTAGGGTTT-CTCTTTTCAATCGAATGGCACATCGTCAATTGTATAGCTACGC 111
||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 112 TTTTCCTTTAGGGTTTCCT-TTTTCGATCGAATGGCACATCGTCAATTGTATAGCTACGC 170
Query 112 TCTTCAACCTTCTTA--C-GCTGCTGCCTCCGCCGTATCTCCAG---CTCCTCCGCCGCA 165
|||||||||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 171 CCTTCAACCTTCTTATGCTGCTGCTGCCTCCACCGTATCTCCAGCTCCTCCTCCGCCGCA 230
Query 166 AC-AGCA--GCCGCCAAAAACCGGTCTTTCCTCTCTCTACGGTTCTTCTGCTGATCATTA 222
|| | || ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 231 ACAACCACTGCCGCCAAAAACCGGTCTTTCTTCTCTCTACGGTTCTTCTGCTGACCATTA 290
Query 223 -TTACCCCGATACCACGTTTCGTTTCTTAGCTCGCGATGGATCCGAAGCTTTGAGCAACT 281
|| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 291 CTT-TCCGGATACCACGTATCGTTTCTTAGCTCGTGATGGATCCGAAGCTTTGAGCAACT 349
Query 282 ATTCAGGGACTCTTGCATCGTCTTCCGCTATGTACCACCATTTGCCTAACACGACGGCAT 341
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 350 ATTCAGGGACTCTTGCATCGTCTTCCTCTATGTACCATCATTTGCCTAACACGACGGCAT 409
Query 342 CGCATTTGGCGTATCCGCAGCTGCTTCAACATCAGGAAGCAGCTTGGCCACCTGGTGTGG 401
|||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 410 CGCATTTGGCGTATCCTCAGCTGCTTCAGCATCAGGAAGTTGCTTGGCCACCTGGTGTGG 469
Query 402 AGGTTCCAGGTGCTTCTTCCGCCGTCGAGCCACTTCCGCCTGGTGTCAAACGCACCTCTG 461
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 AGGTTCCCGGTGCTGCTTCCGCCGTCGAGCCACTTCCTCCTGGTGTCAAACGCACCTCTG 529
Query 462 AAGCGCTCTACTATCCGACTCTGTTGGGTGCCCATAATACAATTGGTCAAACCGAAGCTT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AAGCGCTCTACTATCCGACTCTGTTGGGTGCCCATAATACAATTGGTCAAACCGAAGCTT 589
Query 522 GGTATACTACAGACTATTTTACCAAGCGCCCTAAGTTGGAGAGTACAAGCCATTTGCCTA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGTATACTACAGACTATTTTACCAAGCGCCCTAAGTTGGAGAGTACAAGCCATTTGCCTA 649
Query 582 TATATCCACAGAGGGCAGGAGAGAAGGATTGTACCCACTATATGCAAACAAGAACATGTA 641
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 650 TATATCCACAGAGGGCAGGAGAGAAAGATTGTACCCACTATATGCAAACAAGAACATGTA 709
Query 642 AATTTGGAGATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGCGGAATCCCAG 701
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AATTTGGAGAAAGCTGCAGGTTTGATCATCCTATTTGGGTTCCTGAGGGCGGAATCCCAG 769
Query 702 ATTGGAAAGAGGCACCAGTTGTTCCAAATGAAGAGTACCCTGAGAGACCAGGAGAACCAG 761
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 ATTGGAAAGAGGCACCAGTTGTTCCAAATGAAGAGTATCCTGAGAGACCAGGAGAACCAG 829
Query 762 ATTGTCCTTACTATATAAAAACCCAACGCTGCAAATATGGTTCAAGGTGCAAATTTAATC 821
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 830 ATTGTCCTTACTATATAAAAACACAACGCTGCAAATATGGTTCAAAGTGCAAATTTAATC 889
Query 822 ATCCGAGAGAAGAGGCTGCAGTTAGTGTTGAAACCCAAGATGCATTGCCTGAGAGGCCTT 881
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 890 ATCCAAGAGAAGAGGCTGCAGTTAGTGTTGAAACTCAAGATTCATTGCCTGAGAGGCCTT 949
Query 882 CTGAACCTATGTGCACATTCTACATGAAGACTGGAAAATGTAAATTTGGTTTAACATGCA 941
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 CTGAACCTATGTGCACATTCTACATGAAGACTGGAAAATGTAAATTTGGTTTGTCATGCA 1009
Query 942 AATTCCACCATCCAAAGGATATCCAGGTACCATCATCTAGTCAGGATAATGGTAGCAGTG 1001
|||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||
Sbjct 1010 AATTCCACCATCCAAAGGATATCCAGCTACCATCATCGAGTCAAGATATTGGTAGCAGTG 1069
Query 1002 TGGGGTTAACCAGTGAGCCTGATGCCACAAACAATCCGCATGTCACATTTACCCCAGCAT 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TGGGGTTAACCAGTGAGCCTGATGCCACAAACAATCCGCATGTCACATTTACCCCAGCAT 1129
Query 1062 TGTATCATAACTCGAAAGGACTACCTGTTAGACCGGGCGAAGTGGACTGCCCATTCTATC 1121
||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1130 TGTATCACAACTCAAAAGGACTACCTGTTAGATCGGGTGAAGTGGACTGCCCATTCTATC 1189
Query 1122 TCAAAACCGGAAGCTGCAAGTATGGAGCCACTTGTCGCTACAATCATCCTGAGAGGACTG 1181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TCAAAACGGGAAGCTGCAAGTATGGAGCCACTTGTCGCTACAATCATCCTGAGAGGACTG 1249
Query 1182 CATTTATCCCCCAAGCTACTGGGATAAACTATTCTCTAGTTTCGTCGAACACTGCGAATT 1241
|||| || ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1250 CATTCATTCCCCAAGCTGCTGGGGTAAACTATTCTCTAGTTTCATCGAACACTGCGAATT 1309
Query 1242 TAAACCTTGGGATGGTTACACCAGCTACCTCCTTCTACCAGACTCTTACTCAACCCACGC 1301
| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1310 TGAACCTTGGGCTGGTTACACCAGCTACCTCTTTCTATCAGACTCTTACTCAACCCACGC 1369
Query 1302 TTGGAGCGCTTTCAGCAACTTATCCCCAAAGACCTGGACAATCAGAATGTGACTACTACA 1361
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TTGGAGTGATTTCAGCAACTTATCCCCAAAGACCTGGACAATCAGAATGTGACTACTACA 1429
Query 1362 TGAAGACAGGGGAGTGCAAGTTTGGAGAGAAATGCAGGTTCCATCACCCAGCAGATAGGT 1421
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1430 TGAAGACAGGGGAGTGCAAGTTTGGAGAGAGATGCAAATTCCATCACCCAGCAGATAGGT 1489
Query 1422 TAAGTGCAACGAGCAATCAAGCTTCTCAACAACCAAATGTAAAGCTGAGTCTTGCAGGGT 1481
||||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1490 TAAGTGCAATGACCAAACAAGCTCCTCAACAACCAAATGTAAAGCTGAGTCTTGCAGGGT 1549
Query 1482 ATCCCAGAAGAGAGGGTGCGCTTAATTGCCCTTATTACATGAAGACAGGGACTTGCAAAT 1541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1550 ATCCCAGAAGAGAGGGTGCGCTTAATTGCCCTTATTACATGAAGACAGGAACTTGCAAAT 1609
Query 1542 ACGGGGCAACATGCAAGTTTGACCATCCTCCTCCAGGTGAGGTGATGGCTAAGACCACTT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ACGGGGCAACATGCAAGTTTGACCATCCTCCTCCAGGTGAGGTGATGGCTAAGACCACTT 1669
Query 1602 CAGAAGCCGATGCTGCTGGAGCAACC------GACACTACTCAATGAGTTTCCCAGCTTT 1655
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1670 CAGAAGCCGATGCTGCTGGAGCAACCAACACCGACACTACTCAATGAGTTTCCCAGCTTT 1729
Query 1656 GTATAAGATAAGATGATATCGTGTTGTAATCTTAGTTTACTTGCTATGTTGTGCATCTGT 1715
|| ||| ||||||||||||| |||||||||| |||||||||| |||||| |||||||||
Sbjct 1730 GTGTAACATAAGATGATATCTTGTTGTAATCCTAGTTTACTTCCTATGTACTGCATCTGT 1789
Query 1716 TTCGTTTC-AAATGCTTGTCGCTCCTGAGTTCTCT--TT------ATCATCCTAAAACGA 1766
|||||||| |||||||| |||||| |||||||||| || ||||||||||||| |
Sbjct 1790 TTCGTTTCGAAATGCTTATCGCTCGTGAGTTCTCTACTTCTCTTTATCATCCTAAAACAA 1849
Query 1767 AAA-GAAATGGTTGAGCGAGTCTTCTTTTACTCAGTTGAGTTCATAAAGGCAAAATTGTT 1825
||| || || |||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1850 AAAAGATATCGTTGAGTGAGTCTTCTTTTACTCAGTTGAGCTCATAAAAGCAAAATTGTT 1909
Query 1826 C 1826
|
Sbjct 1910 C 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90360981000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5