BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478628
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12685.1 | Symbols: | Acid phosphatase/vanadium-dependent h... 1210 0.0
> AT3G12685.1 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr3:4029183-4030355 REVERSE
LENGTH=798
Length=798
Score = 1210 bits (655), Expect = 0.0
Identities = 767/817 (94%), Gaps = 24/817 (3%)
Strand=Plus/Plus
Query 1 GACATAACAGAGCGTCAGAACCATAGGTTCCAAATTTCTCGCTGCCCCCTTCTTATCGTC 60
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 GACATAACAGAGCGTCAGAACCATTGGTTCCAAATTTCTCGCTGCCTTATTCTTATCGTC 60
Query 61 ATCATCCGACCAAAGTAATCCTCAAGCTCTTTCGTTTGCACAGAGATG-T--TGAAGCAC 117
||| |||||||||||| | | | | || ||| |||||||||||| | ||||||||
Sbjct 61 ATCCTCCGACCAAAGT--T-C-C-A--TC-TTC---TGCACAGAGATGTTGATGAAGCAC 109
Query 118 TGTTTTGTGTCTCATAACGCCAATGATCTCTATTTCTCCTTCTCCAACTCCAAATTCAAT 177
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 110 TGTTTTGTGTCTCATAACGCCAATGATCTCTGTTTCTCTTTCTCCAACTCCAAATTCAAT 169
Query 178 CTTGCAAGCTGCCCAAAGAAGCCACCTCGTCTCACCTCGTGCGTTGTCAATGTTGGATTC 237
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 170 CTTGCAAGCTGCCCAAAGAAGCCACCTCGTCTCA-C-C-TGCGTTGTCAATGTTGGATTC 226
Query 238 CAAGATATCGCTGAGGTCATCCACAACAAGGTACTCATAGCTGCTGGGACTTCTGCTGTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CAAGATATCGCTGAGGTCATCCACAACAAGGTACTCATAGCTGCTGGGACTTCTGCTGTG 286
Query 298 ATTGGGCAGCTCTCAAAACCATTCACTTCTGTGGTTTTGTATGGGAAAAATCTGGACTTT 357
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 287 ATTGGGCAGCTCTCAAAGCCATTCACTTCTGTCGTTTTGTATGGGAAAAATCTGGACTTT 346
Query 358 AGAAGTGTCTTTCAAGCTGGAGGTTTCCCTTCAACACATTCTTCTTCTGTTGTGGCTGCA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AGAAGTGTCTTTCAAGCTGGAGGTTTCCCTTCAACACATTCTTCTTCTGTTGTGGCTGCA 406
Query 418 GCAACTGCAATTGCTTTTGAAAGGGGATTTGCTGACTCCATTTTTGGTCTGACGGTGGTT 477
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 407 GCAACTGCTATTGCTTTTGAAAGGGGATTTGCTGACTCCATTTTTGGTCTAACTGTGGTT 466
Query 478 TATGCTGGCCTTATCATGTATGATGCCCAGGGGGTGAGGAGAGAAGTTGGGAAACATGCG 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 467 TATGCTGGCCTTATCATGTATGATGCCCAGGGGGTGAGGAGAGAAGTTGGAAAACATGCC 526
Query 538 AAAGTGTTGAACAAACTAACAGCTAATGCTCGTAGAAGTGAAGTAATGAGTTTAAAGGGC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAAGTGTTGAACAAACTAACAGCTAATGCTCGTAGAAGTGAAGTAATGAGTTTAAAGGGC 586
Query 598 AACGAATCTAATAAGGCATTG-CAATCAGACGAGATCAGTGAAGAGGTTGCTCCTCCATT 656
||||||||||| || || ||| || ||||| ||||||||||| ||| |||||||||||||
Sbjct 587 AACGAATCTAACAAAGCTTTGACA-TCAGAAGAGATCAGTGAGGAGATTGCTCCTCCATT 645
Query 657 GAAAGAATCAATAGGACACACTGAAGTTGAGGTCATAGCAGGGGCTTTGTTCGGTTTCTT 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 GAAAGAATCAATAGGACACACTGAAGTTGAAGTCATAGCAGGGGCTTTGTTCGGTTTCTT 705
Query 717 AGTTACCTTCAGTGTTTATTCCCTTATGTAAAAA-GCTCCCAACTTTATAAAAACAATAt 775
||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 706 AGTTACCCTCAGTGTTTATTCCCTGATGTAAAAAAGCTCCCAACTTTATAAAAACTATAT 765
Query 776 ttttttttGGTGTATTGATAAGAAAGAGAGAGAATTT 812
|||||| | ||| | ||||||||||| |||||||||
Sbjct 766 ATTTTTT-G-TGT-T-GATAAGAAAGAAAGAGAATTT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39534273689
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5