BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478629
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12690.1 | Symbols: AGC1.5 | AGC kinase 1.5 | chr3:4030447-4... 3291 0.0
AT5G55910.1 | Symbols: D6PK | D6 protein kinase | chr5:22639844... 165 2e-39
> AT3G12690.1 | Symbols: AGC1.5 | AGC kinase 1.5 | chr3:4030447-4033332
REVERSE LENGTH=2193
Length=2193
Score = 3291 bits (1782), Expect = 0.0
Identities = 1984/2081 (95%), Gaps = 16/2081 (1%)
Strand=Plus/Plus
Query 25 CAATTCAACTGGAAACATCAGTTTCTCCGTTGGTCAGAAGC-AGAAGAAGAGGGAGAGAC 83
||||||||||||||||||||||||||||||| ||||||| | |||||| || ||||||||
Sbjct 125 CAATTCAACTGGAAACATCAGTTTCTCCGTTCGTCAGAA-CAAGAAGACGA-GGAGAGAC 182
Query 84 CAGTTTCTTCGGTTTGATTATCCTCAGCTTGTCTTTTACATCAGCAAGGAAGCGTGATCA 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CAGTTTCTTCGGTTTGATTATCCTCAGCTTGTCTTTTACATCAGCAAGGAAGCGTGATCA 242
Query 144 TTTCAGGTAAAAGGTTAGCTACTTTATAACGGAAGAAGAATCATTATCAACCTGGAGATA 203
| |||||| |||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 243 TCTCAGGTCAAAGGTGAGCTACTTTATAACGGAAGAAGAATCGTCATTAACCTGGAGATA 302
Query 204 TTCCGAATATGGACTTAGCTTCCAAGAAGAACACAGCTAATGTTGGCTCCAAGGAGGTAG 263
||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |||
Sbjct 303 TTCCGAAAATGGACTTAGCTTCTAAGAAGAACACAGCTAATGTCGGTTCCAAGGAGATAG 362
Query 264 ACCCATTCGTAAAACCTAAGTCGCCTCGTACAAGCCTCTCTCCATTTTCACTTAAACTAG 323
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 ACCCA---ATAAAACCTAAGTCGCCTCGTTCAAGCCTCTCTCCATTTTCACTTAAACTAG 419
Query 324 GAGACAATGTTCCCCGAAACCCTTATTTCGATCCCAAGAAGATGGATCCTCTCGTTAAAC 383
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 420 GAGACAATGTTCCCCGAAACCCTCATTTTGATCCCAAGAAGATGGATCCTCTCGTCAAAC 479
Query 384 ATCAACCGATAAAGTCTCATGAACCTCCCACCGCGACTAGAGGGACCAATAGCGAGGGTG 443
|||||||| |||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 480 ATCAACCGCCAAAGTCTCTTGAACCTCCCCCCTCGACTAGAGGGACCAATAGCGAGGGTG 539
Query 444 ATTTAAAGCATAACACCTATTCTAGCGATGGTGATAGCTTAGCAATGCGGAAGAATGCTC 503
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACTTAAAGCATAACACCTATTCTAGCGATGGTGATAGCTTAGCAATGCGGAAGAATGCTC 599
Query 504 CTAAAAATCTTCATTATGATCCCAAAAAGATTGTTCCTTTAACCACATCTGAAACATACT 563
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 CTAAAAATCTTCATTATGATCCCAAAAAGATTGTTCCTTTGACCACATCTGAAACATACT 659
Query 564 CCCCAAGCGCCAGAAATCATCACCACCACAGGACTAAGTCCCCAGACAACAAGAGAGCCC 623
| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 660 CGCCAAGTGCCAGAAATCATCACCACCACAGGACAAAGTCCCCAGACAAGAAGAGAGCCC 719
Query 624 CTAGACATAATGGGGACTATGCATATGGTGATAACTTGGTGGGTCCATCAGCTAC-ACCT 682
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 720 CTAGACATAATGGGGACTATGCCTATGGTGATAACTTGGTAGGTCCATCAGCT-CAACCT 778
Query 683 TTCAAGCCTCACACGGGAGGGGACGTGAGGTGGGATGCTATTAACTCAATCGCTTCAAAA 742
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 779 TTCAAGCCTCACACGGGAGGGGACGTGAGGTGGGATGCCATTAACTCAATCGCTTCTAAA 838
Query 743 GGCCCTCAAATAGGTCTCGACAACTTCAGGCTTCTGAAACGTCTAGGGTATGGGGATATA 802
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGTCCTCAAATAGGTCTCGACAACTTCAGGCTTCTGAAACGTCTAGGGTATGGGGATATA 898
Query 803 GGCAGCGTTTATCTTGCAGACCTGCGAGGGACAAATGCGGTTTTTGCGATGAAGGTGATG 862
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 899 GGCAGCGTTTATCTTGCAGACCTGCGGGGGACAAATGCGGTTTTTGCAATGAAAGTGATG 958
Query 863 GATAAGGCCTCTTTGGCCAGCAGAAACAAGTTGCTGAGGGCACAGACCGAAAGAGAAATC 922
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 959 GATAAGGCCTCCTTGGCCAGCAGAAACAAGTTGCTGAGAGCACAAACCGAAAGAGAAATC 1018
Query 923 CTATCCCTGCTTGATCATCCTTTCTTGCCGACTCTCTATTCTTACTTTGAGACCGATAAA 982
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1019 CTATCCCTGCTTGATCATCCTTTCTTGCCGACTCTCTATTCTTACTTTGAGACAGATAAA 1078
Query 983 TTCTACTGTTTGGTCATGGAGTTCTGCAGCGGCGGAAATCTCCATTCACTCAGACAGAAG 1042
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 TTCTACTGTTTGGTCATGGAGTTCTGCAGCGGCGGAAATCTCCATTCTCTCAGACAGAAG 1138
Query 1043 CAACCCAGCAGGCGTTTCACAGAAGAGGCCGCGAGGTTCTACGCGTCTGAAGTGCTATTG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAACCCAGCAGGCGTTTCACAGAAGAGGCCGCGAGGTTCTACGCGTCTGAAGTGCTATTG 1198
Query 1103 GCTTTGGAGTATCTGCACATGCTGGGGGTTGTGTACAGAGACTTAAAGCCAGAGAACATC 1162
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCTTTGGAGTATCTACACATGCTGGGGGTTGTGTACAGAGACTTAAAGCCAGAGAACATC 1258
Query 1163 CTTGTTCGAGATGAAGGCCACATAATGCTCTCTGACTTTGACCTCTCCCTCCGTTGCACC 1222
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1259 CTTGTTCGAGATGAAGGCCACATAATGCTCTCAGACTTCGACCTCTCCCTCCGTTGCACC 1318
Query 1223 TTTAATCCGACCCTCGTTAAGCCCTCCTCAGTCTGCAGCGGAGGAGGTGCTATCCTCAAC 1282
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1319 TTTAATCCGACCCTCGTTAAATCCTCCTCAGTCTGCAGCGGGGGAGGTGCTATCCTCAAT 1378
Query 1283 GAGGAGTTTGCTGTCAATGGCTGCATGCATCCATCCGCCTTTCTCCCCCGCCTCCTCCCT 1342
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1379 GAGGAGTTTGCTGTCAATGGCTGCATGCATCCATCCGCCTTTCTTCCCCGCCTACTCCCT 1438
Query 1343 TCCAAGAAAACCCGTAAAGCCAAATCAGATTCCGGCCTCGGTGGCCTCTCTATGCCGGAG 1402
|||||||||||||||||||| |||||||| || || |||||||||||||||||||| |||
Sbjct 1439 TCCAAGAAAACCCGTAAAGCGAAATCAGACTCTGGTCTCGGTGGCCTCTCTATGCCAGAG 1498
Query 1403 CTCATGGCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTG 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CTCATGGCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTA 1558
Query 1463 GCTCCAGAGATCATTCGTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGG 1522
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GCTCCAGAGATCATACGTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGG 1618
Query 1523 ATCTTCCTTTATGAGCTCCTCCATGGGACCACCCCGTTCAAGGGGCAGGGAAACAGAGCC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATCTTCCTTTATGAGCTCCTCCATGGGACCACCCCGTTCAAGGGGCAGGGAAACAGAGCC 1678
Query 1583 ACGCTGCACAATGTAGTGGGTCAGCCGCTGAAGTTCCCGGATACCCCGCATGTGAGCTCA 1642
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ACGTTGCACAATGTGGTGGGTCAGCCGCTGAAGTTCCCGGATACCCCGCATGTGAGCTCA 1738
Query 1643 GCGGCACGTGATCTCATCCGTGGACTTCTAGTGAAGGATCCTCACAGAAGGATCGCTTAC 1702
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1739 GCGGCACGTGATCTCATCCGCGGACTACTAGTGAAGGATCCACACAGAAGGATCGCTTAC 1798
Query 1703 ACGCGGGGAGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGGGCTCTA 1762
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ACGAGGGGGGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGGGCTCTA 1858
Query 1763 GTGCGTAGTGCTTCCCCGCCTCACATTCCCGACCCCGTGGACTTGGGACCGTACGCGGCC 1822
|| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1859 GTTCGTAGTGCTGCCCCACCTCACATTCCAGACCCCGTGGACTTGGGACCGTACGCGGCC 1918
Query 1823 GCTAGAGGGAAGGCAAAGAGCCATGGAGTTGGTGATCACTGTAACTCAATTAAGCCGGAG 1882
|||||||| ||| | ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1919 GCTAGAGGTAAGACCAAGAGCCATGGAGGTGGTGATCACTGTAACTCAATGAAGCCGGAG 1978
Query 1883 CCTCTGGTCGCCTGTGCTGCTGGTCCCACGGATGATACGGCGTATATAGATTTCGAGTAC 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 CCTCTGGTCGCCTGTGCTGCTGGTCCCACGGATGATACGGCGTATATAGATTTCGAGTAC 2038
Query 1943 TTTTAGACTTAAA-CTCCACAAGCTGAAAGTTTCTATATGTTTCTTTTTGTTCATATTCT 2001
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2039 TTTTAGACTTAAAACTCCACAAGCTGAAAGTTTCGATATGTTTGTTTTTGTTCATATTCT 2098
Query 2002 TTAATTTTTGACGAATACAAATTGTGATTTATAAAAGAAGAACAAATGACTTGATTTAAG 2061
|||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2099 TTAATTTTGG-CGAATACAAATTGTGATTTATAAAAGAAGAACAGATGACTTGGTTTAAG 2157
Query 2062 AGACAAAGATTCCATGAGTTTTACTAATAGAGTTAAAGCAG 2102
|||| || | | |||||||||||| |||||||||||||
Sbjct 2158 AGACTAA-A----A-GAGTTTTACTAAAAGAGTTAAAGCAG 2192
> AT5G55910.1 | Symbols: D6PK | D6 protein kinase | chr5:22639844-22642354
REVERSE LENGTH=2065
Length=2065
Score = 165 bits (89), Expect = 2e-39
Identities = 277/365 (76%), Gaps = 24/365 (7%)
Strand=Plus/Plus
Query 1409 GCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTGGCTCCA 1468
|||||||| |||| | || || ||||| ||||| ||||||||||||||| | ||||||
Sbjct 1363 GCAGAGCCCACAGGCGCCCGTTCTATGTCTTTTGTTGGCACACACGAGTACTTAGCTCCA 1422
Query 1469 GAGATCATTC-GTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGGATCTT 1527
||||||| || || || |||||||| || || || || |||||||| || ||||||||
Sbjct 1423 GAGATCA-TCAAAGGTGAAGGACATGGAAGTGCAGTTGATTGGTGGACCTTTGGGATCTT 1481
Query 1528 CCTTTATGAGCTCCTCCATGGGACCACCCCG-TTCAAGGGGCAGGGAAA-CAGAGCCACG 1585
|||||||| || | ||| | || ||| || ||||| || ||||| | |||| |||
Sbjct 1482 TCTTTATGAACTATTGTTTGGTAAAACACCGTTTAAAGGGTCA-GGAAATC-GAGCAACG 1539
Query 1586 CTGC-ACAATGTAGTGGGTCAGCCGCTGAAG-TTCCC-GGATACCCCGCATGTGAGC-TC 1641
|| | ||| || || |||||||| || || ||||| | || | ||| ||| ||| ||
Sbjct 1540 CT-CTTCAACGTGGTTGGTCAGCCTCT-TAGATTCCCTGAAT-CTCCGGTTGTTAGCTTC 1596
Query 1642 AGCGGC-ACGTGATCTCATCCGTGGA-CTT-CTAGTGAAGGATCCTC-ACAGAAGGA-TC 1696
|| || | | ||| | || ||| || || |||||||| || | ||| | || |
Sbjct 1597 -GCAGCTA-GGGATTTGAT--AAGGAGTTTGCTTGTGAAGGAGCCACAACA-TA-GATTA 1650
Query 1697 GCTTACACGCGGGGAGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGG 1756
||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1651 GCTTATAAGCGTGGAGCAACAGAGATAAAGCAACATCCTTTCTTTGAAGGAGTGAATTGG 1710
Query 1757 GCTCT 1761
|||||
Sbjct 1711 GCTCT 1715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104216331420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5