BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478632
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12700.1 | Symbols: | Eukaryotic aspartyl protease family p... 1941 0.0
> AT3G12700.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:4037070-4039134 FORWARD LENGTH=1543
Length=1543
Score = 1941 bits (1051), Expect = 0.0
Identities = 1379/1530 (90%), Gaps = 52/1530 (3%)
Strand=Plus/Plus
Query 1 GAGAGAAAGGCGTTTCATCAATGTCTATAAATACTCTGTTTTGGAAACAGAACCCAGA-A 59
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 47 GAGAGAAAGGCGTTTCATCAATGTATATAAATACTCTGTTTTGGAAACAGAACCCA-ACA 105
Query 60 GGGG-----AAAAATGCAGAGAATCAAGACAT-C-GCTCTC-GTG-TCTC-TGTCTCATC 109
|||| |||||| || |||| || | || | | | || |||| |||||||||
Sbjct 106 GGGGACAAAAAAAAT-CA-AGAA-GAAAAAATGCAGAAGACATTGCTCTCATGTCTCATC 162
Query 110 ACGACGCTCCTCCTACTCACCGCCGCAGATTCCACGGAAGACACGGCGGTGCGGCTAAAA 169
||||||||||||||| |||||| ||||||||||| | ||||||| ||||||||||||||
Sbjct 163 ACGACGCTCCTCCTAATCACCGTCGCAGATTCCATGAAAGACACCTCGGTGCGGCTAAAA 222
Query 170 TTAGCACACCGGGACACTCTCTGGCCGAATCCTCTCAGCCGCATTGAGGACATTATCGGT 229
||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 223 TTAGCGCACAGGGACACTCTCTTGCCGAAACCTCTCAGCCGCATTGAGGACGTTATCGGC 282
Query 230 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAACGTAAGTTCAAAGGAGGAGTTAAA 289
||||||||||||||||||||||||||||||||||| ||||| | || || |||||| |||
Sbjct 283 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAGCGTAACTCCACAGTAGGAGTGAAA 342
Query 290 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTAACGGAGGTTAGAGTT 349
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 343 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTCACGGAGATTAGAGTT 402
Query 350 GGAACTCCGGCGAAGAAGTTCAGAGTAGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 409
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 403 GGAACTCCGGCGAAGAAGTTCAGAGTGGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 462
Query 410 AATTGTAGATACCGTGGGAGAGGCAAAGGTAAAGTTGAGAATCGGAGAGTGTTTAGAGCT 469
|||||||||||||||| ||||||| ||| || |||||||||||||||||||||
Sbjct 463 AATTGTAGATACCGTGCGAGAGGC------AAA---GACAATCGGAGAGTGTTTAGAGCT 513
Query 470 GAAGAATCTAAGAGTTTTAAAACTGTTGGATGCTTCACTCAGACTTGTAAAGTTGATTTG 529
|| ||||| ||||| ||||| || |||||||| || ||||||||||||||||||||| ||
Sbjct 514 GACGAATCAAAGAGCTTTAAGACCGTTGGATGTTTAACTCAGACTTGTAAAGTTGATCTG 573
Query 530 ATGAATCTTTTCTCACTCTCTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 589
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 574 ATGAATCTCTTCTCACTCACTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 633
Query 590 AGATATGCGGATGGGTCAGCAGCGCAAGGCATATTCGCGAAGGAGACTATCACAGTTGGT 649
|||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 634 AGATATGCAGATGGGTCAGCAGCACAAGGCGTATTCGCAAAGGAGACTATCACAGTTGGT 693
Query 650 CTCACTAATGGTCGTAAGGCTAGACTCCGC-GGTCTCCTCATTGGTTGTAGTAGCTCATT 708
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||
Sbjct 694 CTCACTAATGGTCGTATGGCTAGACTCC-CTGGTCACCTCATTGGTTGTAGTAGTTCCTT 752
Query 709 TAGTGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 768
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TACAGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 812
Query 769 TTTTACTTCCACAGCCACTAGTCTCTTTGGTGCCAAATTTTCCTACTGCCTCGTTGATCA 828
|| |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||
Sbjct 813 CTTCACTTCCACAGCCACTAGTCTCTATGGTGCCAAATTTTCATACTGCCTTGTTGACCA 872
Query 829 CCTCTCCAACAAAAACGTCTCCAACTATCTCATCTTCGGTTCTTCCTCTTCCTCCACCTC 888
|| ||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 873 TCTTTCCAACAAAAACGTCTCCAACTATCTCATCTTCGG--------C-TCCTCCAGATC 923
Query 889 CACCAAAACCGCC--CCGGGACGAACCACGCCGCTTGATCTCACTCTCATCCCACCCTTC 946
||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||
Sbjct 924 CACCAAAACCGCCTTCC--GACGAACCACTCCGCTTGATCTCACTCGCATCCCACCCTTC 981
Query 947 TACGCAATAAACGTCATTGGAATCTCCATCGGAGACAACATGCTCGATATCCCCACGCAA 1006
|||||||| |||||||||||||||||| ||||| || ||||||| ||||||||| |||||
Sbjct 982 TACGCAATCAACGTCATTGGAATCTCCCTCGGATACGACATGCTTGATATCCCCTCGCAA 1041
Query 1007 GTATGGGACGCAACTACCGGTGGTGGGACTATCTTGGACTCAGGAACTAGCCTCACGTTA 1066
||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1042 GTATGGGACGCAACTTCCGGTGGTGGGACTATCTTAGACTCTGGAACCAGCCTCACGTTA 1101
Query 1067 TTGGCTGAAGCCGCGTACAAACCGGTGGTTACGGGGCTCGCACGTTACCTTGTTGAGCTG 1126
|||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||| ||
Sbjct 1102 TTGGCTGACGCCGCGTACAAACAGGTGGTTACAGGGCTCGCACGCTACCTTGTTGAGTTG 1161
Query 1127 AAAAGAGTCAAGCCAGAAGGAATACCAATTGAGTACTGTTTTAGTTCCACGTCCGGGTTC 1186
||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||| ||
Sbjct 1162 AAAAGAGTCAAACCAGAAGGAGTACCAATAGAGTACTGTTTTAGTTTCACTTCCGGATTT 1221
Query 1187 AACGAGAGCAAGTTACCGCAGCTGACGTTTCATTTAAAAGGCGGTGCACGATTTGAGCCG 1246
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1222 AACGTGAGCAAGTTACCGCAGCTGACATTTCATTTAAAAGGCGGTGCACGATTTGAGCCA 1281
Query 1247 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTATGTCG 1306
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1282 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTGTGTCG 1341
Query 1307 GCGGGAACGCCGGCGACTAATGTGGTCGGGAATATAATGCAGCAGAATTATTTGTGGGAG 1366
|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1342 GCTGGAACGCCGGCGACTAATGTGATCGGTAATATAATGCAGCAGAATTATTTGTGGGAG 1401
Query 1367 TTTGATCTAATGGCCTCAACTTTGTCTTTTGCTCCCTCTACTTGCACTTAGCTGTCTTGT 1426
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1402 TTTGATCTCATGGCCTCAACTTTGTCTTTTGCTCCCTCTGCTTGCACTTAGCTGTCTTGT 1461
Query 1427 CCATCTCTCTTCTGTTTATTATTACTTTGATT-GATTGGAatatatatatatatTGTTTT 1485
||||||||| | ||||||||||| || |||| | || |||||| | ||| | ||||
Sbjct 1462 CCATCTCTCGT--GTTTATTATTA-TT-GATTTG-TTCGAATAT-T-TAT-T---GTTT- 1509
Query 1486 GTTAGTGAAAGAATAAAAAACATGTTTGTT 1515
| ||||||| ||||||||||||||||||||
Sbjct 1510 GCTAGTGAATGAATAAAAAACATGTTTGTT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5