BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478633
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein |... 2060 0.0
AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein |... 141 2e-32
> AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein
| chr3:4040324-4041982 REVERSE LENGTH=1341
Length=1341
Score = 2060 bits (1115), Expect = 0.0
Identities = 1265/1335 (95%), Gaps = 20/1335 (1%)
Strand=Plus/Plus
Query 1 TTTCAATTCTCTCTGCCTCTCACAGTTGatatatatatataCGTCCACAATCActtctct 60
|||||||||||||||||||||| || | || |||||||||||| |||||||||||||||
Sbjct 18 TTTCAATTCTCTCTGCCTCTCATAG-T--TA-ATATATATACGTTCACAATCACTTCTCT 73
Query 61 tctctatttctcattcattatctcaaccct-tctctatctctcttACTACAACTTATCAG 119
||||||||||| |||||||||||||||||| ||||| ||||||| | ||||||||||
Sbjct 74 TCTCTATTTCTTATTCATTATCTCAACCCTCTCTCTCTCTCTCTCAGTACAACTTAT--- 130
Query 120 CATCCATCACCAAATATAGAGAATATGAGCAAAACCGAAGCAATAAGCTTGACCAAAAGG 179
|||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 131 CATCCATCACCATATATAGAGAATATGAGCAAAACGGAAGCAATCAGCTTGACCAAAAGG 190
Query 180 GGAATGTTGCCGCCAAGTAGTTGCAGTAGCCTAATGGACCGCTCTGAGTCCCTCAAGAGG 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 191 GGAATGTTGCCGCCAAGTAGTTGCAATAGCCTAATGGACCGCTCTGAGTCCCTTAAGAGG 250
Query 240 GACAGTGTGATGAGCAATGGAGCAGCCAAAGTGAGAGGAAGCTTGGAGCGCAAGAAATCA 299
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 251 GACAGTGTGATGGGCAATGGTGCAGCCAAAGTGAGAGGAAGCTTGGAGCGCAAGAAATCA 310
Query 300 AAGAGTTTTAAGGAAGGAGAAAGCTATTCTTCTTGGCTCATAACGGAGGCTCCTGGGAGT 359
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 311 AAGAGTTTTAAGGAAGGAGATAGTTATTCTTCGTGGCTCATAACGGAGGCTCCTGGGAGT 370
Query 360 ATAGCCGCCGTGAGGAGAGAGCAAGTGGCGGCACAACAAGCCCTAAGGAAACTAAAGATT 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 371 ATAGCCGCCGTGAGGAGAGAGCAAGTGGCGGCACAACAAGCACTAAGGAAACTAAAGATT 430
Query 420 GCTCATTACGGCAGATCCAAATCAACCATTAATTTCACTTCTTCCAAAGTCGTCCCTCTT 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GCTCATTACGGTAGATCCAAATCAACCATTAATTTCACTTCTTCCAAAGTCGTCCCTCTT 490
Query 480 CTTCACCCTAACCCTAACCCTCATCCTCAGAGATGCAGCTTCCTCACCCCCACTTCTGAT 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CTTAACCCTAACCCTAACCCTCATCCTCAGAGATGCAGCTTCCTCACCCCCACTTCTGAT 550
Query 540 CCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGACG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGACG 610
Query 600 TTGTTCGAACTGCTGACCCTAAGCGGCGCACAAGTAGGCTCCGATTGGACTTCAACCTTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TTGTTCGAACTGCTGACCCTAAGCGGCGCACAAGTAGGCTCCGATTGGACTTCAACCTTG 670
Query 660 AGAAAACGTCATGACTATAGGAAGGCTTTTATGGAGTTTGAGGCGGAAGCTG-TTACCAA 718
|||||||| ||||||||||||||||| |||||||||||||||||||||| || || ||||
Sbjct 671 AGAAAACGCCATGACTATAGGAAGGCCTTTATGGAGTTTGAGGCGGAAG-TGGTTGCCAA 729
Query 719 ACTCACCGAGAAAGAGATGAATGCAATAAGCATCGAATACAAGATAGAGATGAGCAAAGT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACTCACCGAGAAAGAGATGAATGCAATAAGCATCGAATACAAGATAGAGATGAGCAAAGT 789
Query 779 GAGAGGTGTTGTGGAGAATGCTACAAAGATTGTCGAGATCAAGAAAGCGTTTGGGTCATT 838
||||||||||||||| || |||| |||||| || ||||||||||||||||||| ||||||
Sbjct 790 GAGAGGTGTTGTGGAAAACGCTAAAAAGATCGTAGAGATCAAGAAAGCGTTTGTGTCATT 849
Query 839 AGAGAAATACCTTTGGGGATTTGTGAACCACAAGCCCATCTCCACGAACTACAAGATGGG 898
||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||
Sbjct 850 AGAGAAATACCTTTGGGGATTTGTGAACCACAAACCAATCTCCACGAACTACAAGCTTGG 909
Query 899 ACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGCATAAGCAAAGACATGGTTCGTAG 958
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 910 ACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGCATCAGCAAAGACATGGTTCGTCG 969
Query 959 AGGCTTCCGGTTTGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTAC 1018
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 AGGCTTCCGGTTCGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTAC 1029
Query 1019 TAACGACCACTTAATCACTTGCTGTCGCCACACTCCTTGCACTATCCTTGCTACCAATCC 1078
||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1030 AAACGACCACTTGATCACTTGCTGTCGCCACGCTCCTTGCACTCTCCTTGCAACCAATCC 1089
Query 1079 CTAATTATTAATTTTTAATTTTATTGAAAGTGTTGTTTTTATTTAACTTTCGAGTGCAAA 1138
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1090 CTAATTATTAATTTTTAATTTAATTGAAAGTGGTGTTTTTATTTAACTTTCGAGTGCAAA 1149
Query 1139 ATGTAGGTGTGGGAGAAAAGAGATTGCAGtttttttttAAATTGGCAATGTAAGATAAAT 1198
|||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1150 ATGTAGGTTTAGGAGAAAAGAGATTGCAGTTTTTTA--AAATTGGCAATGTAAGATAAAC 1207
Query 1199 TAGCTGGTTTTG-tttttttCTTGTGCGTGTGTGTGAGGTGTTTAAAATCACATGTATAA 1257
||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1208 CAGCTGGTTT-GATTTTTTTCTTGTG--TGTG----AGGTGTTTAAAATCACATGTATAA 1260
Query 1258 TGGTTTTTGATGTATGTGTGGTGTGACAAATTGAAATAGTAATTGATTTTCATTGGATTT 1317
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1261 TGGTTTTTGATGTATGTGTGGTGTGGCAAATTGAAATAGTAATTGATTTTCATTTGATTT 1320
Query 1318 ATCTGTTGTTCAAAA 1332
|||| ||||||||||
Sbjct 1321 ATCTATTGTTCAAAA 1335
> AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein
| chr5:18024215-18025991 REVERSE LENGTH=1406
Length=1406
Score = 141 bits (76), Expect = 2e-32
Identities = 401/552 (73%), Gaps = 46/552 (8%)
Strand=Plus/Plus
Query 508 AGAGATGCAGCTTCCTCACCCCCACTTCTGATCCTATTTACGTGGCCTACCATGATGAAG 567
|||||||||| ||| |||| | | ||| ||||| || || || || |||||||| |||
Sbjct 589 AGAGATGCAGTTTCATCACTACAAGTTCAGATCCAATATATGTCGCTTACCATGACAAAG 648
Query 568 AATGGGGAGTTCCAGTTCATGATGACAAG--ACGT-TGTTCGAACTGCTGACCCTAAGCG 624
|||||||||||||||||||||||||||| || | | || || || ||| ||| ||
Sbjct 649 AATGGGGAGTTCCAGTTCATGATGACAATCTAC-TAT-TT-GAGCTTCTGGTGTTAACCG 705
Query 625 GCGCACAAGTAGGCTCCGATTGGACTTCAACCTTGA-GAAAACGTCATGACTAT-AG-GA 681
| || || || || || ||||||||||| || | || || | | ||| | || ||
Sbjct 706 GAGCTCAGGTCGGATCAGATTGGACTTCGGTTTTAAAGAGAA-GAAAC-ACTTTTAGAGA 763
Query 682 AGGCTTT-TATGGAGTTT-GAGGCGGAAGCTGTTAC-CAAACT-CACCGAGAAAGA-GAT 736
|||||| | ||| ||| || || || | || | | || ||| || |||||| || |||
Sbjct 764 -GGCTTTCTCTGG--TTTCGAAGCAGA-GTTGGT-CGCAGACTTCAACGAGAA-GAAGAT 817
Query 737 G-AATGCAATAAG-CATCGAATACAAG-AT-AGAGATGAGCAAAGTGAGAGGTGTTGTGG 792
||| ||||| | || ||| || | || | | | ||| |||| | ||||| |
Sbjct 818 ACAAT-CAATA-GTCAACGACTATG-GCATTA-ACCTTAGCCAAGTCCTTGCAGTTGTTG 873
Query 793 AGAATGCTACA-AAGATTGTCGAGATCAAGAA-AGCGTTTGGG-TCATT-AGAGAAATAC 848
| || |||| | || ||| || || | || || || |||||| ||||| | | ||||||
Sbjct 874 ACAACGCTAAACAA-ATTCTCAAGGTGAA-AAGAGA-TTTGGGGTCATTCA-ACAAATAC 929
Query 849 CTTTGGGGATTTGTGAACCACAAGCCCATCTCCACGAACTACA-AG-ATGGGACACAAGA 906
||||||| ||| |||| ||||| || || |||| || |||| | ||| | | ||||
Sbjct 930 ATTTGGGGGTTTATGAAACACAAACCGGTCACCACAAAATACACATCATGCCA-A-AAGA 987
Query 907 TTCCGGTCAAGACATCGAAGTCGGAGAGC-ATAAGCAAAGACATGGTTCGTAGAGGCTTC 965
| ||||| ||||||||||| ||||||| | ||||||||||||||||||||| | || ||
Sbjct 988 TACCGGTTAAGACATCGAAATCGGAGA-CTATAAGCAAAGACATGGTTCGTCGTGGGTTT 1046
Query 966 CGGTTTGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTA-CTAACGA 1024
| || || ||||| || || | || || || ||||||||||| ||| ||| | |||||
Sbjct 1047 AGATTCGTTGGTCCGACGGTTATACATTCGTTAATGCAAGCCGCCGGT-TTAACCAACGA 1105
Query 1025 CCACTTAATCAC 1036
|||||| |||||
Sbjct 1106 CCACTTGATCAC 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5