BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478636
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3... 2093 0.0
AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) fami... 1009 0.0
AT3G12750.1 | Symbols: ZIP1 | zinc transporter 1 precursor | ch... 189 7e-47
AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWAR... 126 5e-28
AT4G01595.1 | Symbols: | Protein kinase superfamily protein | ... 110 5e-23
> AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049515-4051775
FORWARD LENGTH=1491
Length=1491
Score = 2093 bits (1133), Expect = 0.0
Identities = 1351/1449 (93%), Gaps = 43/1449 (3%)
Strand=Plus/Plus
Query 35 TTC-TCTTCTTCTTCTAGATC--GATGGAAATGGGTCTTACCAGCCGCCGTTGACGACTA 91
||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 51 TTCTTCTTCTTCTTCTAGATCGAGAGGGACATGGGTCTTACCAGCCGCCGTTGACGACTA 110
Query 92 CGACGACCATTCTCTTCCTC-TAATATAGC-CTCCTTCTGCTTTTCTCTATTTCC---T- 145
|||||||||||||||||||| | || | | |||||||||||||||||||||||| |
Sbjct 111 CGACGACCATTCTCTTCCTCTTCATCT-TCTCTCCTTCTGCTTTTCTCTATTTCCTATTC 169
Query 146 TCTCC-----C-CCA-----TT-CACCACACAGAGATCT-CCTATC--A-T--CTATGTC 187
||||| | ||| || |||||| ||||||||| ||| || | | |||||||
Sbjct 170 TCTCCAAATTCACCATTTCCTTCCACCACTCAGAGATCTCCCTTTCTTATTAGCTATGTC 229
Query 188 TTCTACTAATACGCCATCTTCTAGCGCCGCCGCCGCTGCCGGATCTG-TAGATTCTTCCG 246
|||| |||| ||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 230 TTCTTCTAACACGCCATCTTCTA--G-CGCCGCCGCTGCCGGATC-GATAGATTCTTCCG 285
Query 247 CCGCCCGGAGAAATTCCAAGCGACCCAAGTATTCGAAATTTACACAGCAGGAGCTTCCAG 306
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 286 CCGCCCGGAGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTG 345
Query 307 CTTGCAAGCCAATTCTTACGCCTGGTTGGGTGATTTCAACATTTTTGATCATCAGTGTTA 366
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 346 CTTGCAAACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCATTAGTGTTA 405
Query 367 TCTTCATTCCCCTCGGAGTTATTTCACTTTTTGCTTCTCAGGATGTTGTTGAGATCGTTG 426
||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 406 TCTTCATTCCCCTTGGTGTTATTTCTCTCTTTGCTTCTCAGGATGTTGTTGAGATCGTTG 465
Query 427 ATCGGTATGATAGTGCATGCATACCTCTAACTGATCA-GGCTAACAAGGTTGCATACATT 485
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 466 ATCGGTATGATAGTGCATGCATACCTCTATCTGAT-AGGGCTAACAAGGTTGCATACATT 524
Query 486 CAAGGAGCTGGAAATAAATCTTGTACCCGGACGCTGATAGTGCCTAAGCGTATGAAGCAG 545
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 525 CAAGGAACTGGAAATAAATCTTGTACCCGGACGCTAATTGTGCCTAAGCGTATGAAGCAG 584
Query 546 CCTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CCTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAA 644
Query 606 AGCCGAAGTGATTCACAATTGAGAAGTTTGAAAGATGAGAATCAAATAGACGCATGCAAG 665
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 645 AGCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAATAGACGCATGCAAG 704
Query 666 CCTGAGGATGATGTTGGTGGGCTGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 725
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 705 CCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 764
Query 726 TTTAATGACACATACGCTCTATCAAGAAATAACCAGCGTTTAGCGGTAAACAAAAAAGGA 785
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 765 TTTAATGACACATACGTTCTATCAAGAAATAACCAGGGTTTAACGGTAAACAAGAAAGGA 824
Query 786 ATCGCATGGAAGAGTGACAGGGAACACAAGTTTGGGAAAAGGGTGTTTCCTAAGAACTTT 845
|| ||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 825 ATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACTTT 884
Query 846 CAGAAGGGCAATCTGATTGGTGGTGCCGGTCTAGATCCAAATACACCATTGAGTGACCAA 905
|||||||||||||| | |||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 885 CAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAAACCATTGAGTGATCAA 944
Query 906 GAGGATCTGATCGTGTGGATGAGGACTGCAGCGTTGCCAACATTTAGAAAATTATACGGG 965
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 945 GAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAATTATACGGG 1004
Query 966 AAGATAGAGAGTGACTTGGAGAAGGGTGATAACATACAAGTGACTCTGCAGAACAACTAC 1025
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1005 AAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACAACTAC 1064
Query 1026 AACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGT 1124
Query 1086 GGAAAGAACGACTTCCTTGGCATTGCTTACCTCACTGTTGGGGGAATCTGTTTCTTCTTG 1145
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1125 GGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGGGGGAATCTGTTTCGTCTTG 1184
Query 1146 GCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCTACCTAC 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCTACCTAC 1244
Query 1206 TTGTCGTGGAACAGAATTCCTGGAGGTCGGTAAACAAATGACTGCATTATCTGCGTGTAT 1265
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||
Sbjct 1245 TTGTCGTGGAACAGAATTCCTGGAGGTCGTTAAACAGATGACTGCATCATCTGCGTATAT 1304
Query 1266 AAATCTACTTATC-CTTGGTTGTAATTTGATCCAAAACTGAAAGTGATGAt-tttttttt 1323
||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1305 AAATCTACTTATCTCT-GGTTGTAATTTGATCCAAAATTGAAAGTGATGATCTTTTTTTT 1363
Query 1324 CTTTAATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAAGATGCTCATTACATAG 1383
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1364 -TTTAATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAATATGCTCATTACATAG 1422
Query 1384 AATGATT-ATTGGCTTCCTATCATGCTCTTTACCTTTTCTCTTTTTCTCCGGAAAAAGCA 1442
||||||| || | ||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1423 AATGATTGAT-G-CTTCCTATCATGCTCATTACCTTTTCTCTTTTTCTCCC-AAAAAGCA 1479
Query 1443 GTCCCTCGA 1451
|||||||||
Sbjct 1480 GTCCCTCGA 1488
> AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein | chr1:20275534-20277957
REVERSE LENGTH=1412
Length=1412
Score = 1009 bits (546), Expect = 0.0
Identities = 880/1037 (85%), Gaps = 39/1037 (4%)
Strand=Plus/Plus
Query 225 GCCGGATCTGTAGATTCTTCCGCCGCCCGG-AGAAATTCCAAGCGACCCAAGTATTCGAA 283
|||||||| | ||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 201 GCCGGATCGGGAGATTCTTCCGCCGCTAGGAAG-AATTCAAAGCGACCCAAGTATTCGAA 259
Query 284 ATTTACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTTACGCCTGGTTGGGTGATTTC 343
|| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 260 GTTCACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTC 319
Query 344 AACATTTTTGATCA-TCAGTGTTATCTTCATTCCCCTCGGAGTTATTTCACTTTTTGCTT 402
||||||||||| | ||||||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 320 GACATTTTTGAT-AGTCAGTGTTATCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTT 378
Query 403 CTCAGGATGTTGTTGAGATCGTTGATCGGTATGATAGTGCA-TGCATACCT-CTAACTGA 460
| ||||||||||| |||||||||||||||||||||| || | ||||| || | | |||
Sbjct 379 CCCAGGATGTTGTGGAGATCGTTGATCGGTATGATACTG-AGTGCATTCCGGC-ACCTGC 436
Query 461 TCAGG-CTAACAAGGTTGCATACATTCAAGGAGCTGGAAATAAA-TCTTGTACCCGG-AC 517
| ||| |||||||||||||||| |||||||||| |||| ||||| | ||||| |||| |
Sbjct 437 T-AGGACTAACAAGGTTGCATATATTCAAGGAGATGGAGATAAAGT-TTGTAACCGGGAT 494
Query 518 GCTGATAGTGCCTAAGCGTATGAAGCAGCCTATCTACGTATATTACCAGCTTGAGAACTT 577
|| | |||| | |||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 495 -CTTAAAGTGACAAAGCGTATGAAGCAACCTATCTATGTTTATTACCAACTTGAGAATTT 553
Query 578 CTACCAGAATCACCGCAGGTATGTGAAAAGCCGAAGTGATTCACAATTGAGAAGTTTGAA 637
||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 554 CTACCAGAATCACCGAAGGTATGTAAAAAGTCGAAGTGATTCACAGTTGAGAAGTACAAA 613
Query 638 AGATGAGAATCAAATA-GACGCATGCAAGCCTGAGGATGATGTTGGTGGGCTGCCAATTG 696
| | |||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 614 ATACGAGAATCAAATAAGT-GCATGCAAGCCTGAGGATGATGTTGGTGGGCAGCCGATTG 672
Query 697 TGCCATGTGGTCTAATTGCTTGGAGTCTCTTTAATGACACATACGC-TCTATCAAGAAAT 755
|||| ||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 673 TGCCGTGTGGTCTAATTGCTTGGAGTCTTTTTAACGACACATACGCGT-TATCAAGAAAC 731
Query 756 AACC-A-GCGTTTAGCGGTAAACAAAAAAGGAATCGCATGGAAGAGTGACAGGGAACACA 813
|| | || | ||| || ||||||||||| || |||||||||||||||| ||||||||
Sbjct 732 AATGTAAGCCT--AGCTGTGAACAAAAAAGGCATTGCATGGAAGAGTGACAAGGAACACA 789
Query 814 AGTTTGGGAA-AAGGGTGTTTCCTAAGAACTTTCAGAAGGGCAATCTGATTGGTGGTGCC 872
|||||||||| |||| | || || ||||| ||||| ||||| ||| | | ||||||||
Sbjct 790 AGTTTGGGAACAAGG-TCTTCCCCAAGAATTTTCAAAAGGGGAATATCACAGGTGGTGCT 848
Query 873 GGTCTAGATCCAA-A-TACAC-CATTGAGTGACCAAGAGGATCTGATCGTGTGGATGAGG 929
| ||||||||| | ||| | | || ||||| ||||| ||||| || |||||||||||
Sbjct 849 ACTTTAGATCCAAGAATAC-CGC-TT-AGTGAACAAGAAGATCTCATTGTGTGGATGAGA 905
Query 930 ACTGCAGCGTTGCCAACATTTAGAAAA-TTATACGGGAAGATAGAGAGTGACTTGGAGAA 988
|| ||||| |||||||||||||||||| || ||||| ||||||||| |||| | ||||
Sbjct 906 ACCGCAGCATTGCCAACATTTAGAAAACTT-TACGGAAAGATAGAGTCTGACCTCGAGAT 964
Query 989 GGGTGATAACATACAAGTGACTCTGCAGAACAACTACAACACATACAGTTTCAGTGGGAA 1048
|||||| | |||||| || | ||| | |||||||||||||| ||||| |||| ||| ||
Sbjct 965 GGGTGACACCATACACGTTAAGCTGAACAACAACTACAACACGTACAGCTTCAATGGAAA 1024
Query 1049 GAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGTGGAAAGAACGACTTCCTTGGCAT 1108
||||||||||||| ||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 1025 GAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTGGGAAGAACGATTTCCTTGGCAT 1084
Query 1109 TGCTTACCTCACTGTTGG-GGGAATCTGTTTC-TTCTTGGCACTTGCATTTACCGTCATG 1166
||||||||| || ||||| |||| |||||||| || ||||| || ||||||||| |||||
Sbjct 1085 TGCTTACCTGACAGTTGGCGGGA-TCTGTTTCATT-TTGGCCCTCGCATTTACCATCATG 1142
Query 1167 TATCTTGTGAAACCCAGGCGACTCGGTGATCC-TACCTACTTGTCGTGGAACAGAATTCC 1225
|| ||||||||||||||||| || || ||||| | |||||||||| ||||| |||| |||
Sbjct 1143 TACCTTGTGAAACCCAGGCGTCTTGGAGATCCGT-CCTACTTGTCATGGAATAGAAATCC 1201
Query 1226 TGGAGGTCGGTAAACAA 1242
||||||||||||| |||
Sbjct 1202 TGGAGGTCGGTAA-CAA 1217
> AT3G12750.1 | Symbols: ZIP1 | zinc transporter 1 precursor |
chr3:4051651-4053201 REVERSE LENGTH=1412
Length=1412
Score = 189 bits (102), Expect = 7e-47
Identities = 118/125 (94%), Gaps = 4/125 (3%)
Strand=Plus/Minus
Query 1328 AATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAAGATGCTCATTACATAGAATG 1387
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1412 AATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAATATGCTCATTACATAGAATG 1353
Query 1388 ATT-ATTGGCTTCCTATCATGCTCTTTACCTTTTCTCTTTTTCTCCGGAAAAAGCAGTCC 1446
||| || | ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1352 ATTGAT-G-CTTCCTATCATGCTCATTACCTTTTCTCTTTTTCTCCC-AAAAAGCAGTCC 1296
Query 1447 CTCGA 1451
|||||
Sbjct 1295 CTCGA 1291
> AT4G01593.1 | Symbols: | other RNA | chr4:690710-692169 FORWARD
LENGTH=1275
Length=1275
Score = 126 bits (68), Expect = 5e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 276 TATTCGAAATTTACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTTACGCCTGGTTGG 335
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 140 TATTCGAAATTTACACAGCAGGAGCTTCCAGCTTGCAAACCAATTCTTACGCCTGGTTGG 199
Query 336 GTGATTTCAAC 346
|||||||||||
Sbjct 200 GTGATTTCAAC 210
> AT4G01595.1 | Symbols: | Protein kinase superfamily protein
| chr4:690726-691993 REVERSE LENGTH=762
Length=762
Score = 110 bits (59), Expect = 5e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 276 TATTCGAAATTTACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTTACGCCTGGTTGG 335
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 639 TATTCGAAATTTACACAGCAGGAGCTTCCAGCTTGCAAACCAATTCTTACGCCTGGTTGG 580
Query 336 GT 337
||
Sbjct 579 GT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5