BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478640 Length=1093 Score E Sequences producing significant alignments: (Bits) Value AT3G12775.1 | Symbols: | ubiquitin-conjugating enzyme family p... 1493 0.0 > AT3G12775.1 | Symbols: | ubiquitin-conjugating enzyme family protein | chr3:4059772-4060944 FORWARD LENGTH=1089 Length=1089 Score = 1493 bits (808), Expect = 0.0 Identities = 1005/1099 (91%), Gaps = 18/1099 (2%) Strand=Plus/Plus Query 1 ATGAGTAATAATAATTCT-TTGATTACTAATCTCTTCGAAGGTAGGAATAAAGGTATTGA 59 ||||||||| ||| |||| | |||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGAGTAATGATAGTTCTAAT-ATTACTAATCTCTTCGAAGGTAGGGATAAAGGTATTGG 59 Query 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGTTTCTACTACTGAGCAGGAAGAAGA 119 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGGTTCTTCTACTGAGCAGGAAGAAGA 119 Query 120 TGAATCCCCAAAA-CTTATACCGGAGTCTAAACCGCAATCGGAAGGTGATAAAGTGGGCG 178 ||||| ||||||| ||| ||||||||||||||||| |||||||||||| |||||||| | Sbjct 120 TGAAT-CCCAAAACCTTGTACCGGAGTCTAAACCGGGATCGGAAGGTGAAAAAGTGGGTG 178 Query 179 ACATCGTTCGTTTTGGAAAAGACAGTTACTTCGTTATTGATATTTTCGAGAAAGAGATCA 238 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 ACATCGTTCGTTTTGGTAAAGACAGTTACTTCGTTATTGATATCTTCGAGAAAGAGATCA 238 Query 239 TGGAGTTAGGAGACAAAGTTGATTTAAACTTCAAGAGATTCAAAAGGTTCGAAGCTGTTT 298 ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 239 TGGAGTTAGGAGACAAAGTGGATTTAAACTACAAGAGATTCAAAAAGTTCGAAGCTGTTG 298 Query 299 ATGGAGACGCTCCGCGAGACCATCACTTCTACAACTACCATTGCTGTTACTC-T-TGCTG 356 |||||| |||||||||||| ||||||||||||||||||| |||||||||||| | | | Sbjct 299 ATGGAGGCGCTCCGCGAGATCATCACTTCTACAACTACCGTTGCTGTTACTCCTCTTATT 358 Query 357 C-TGCGTCTGCTCGAGTAGTACCGTGGGTAGATTGTGGGGGATTCTAGAGACAGGACTAG 415 ||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||| Sbjct 359 TATGCGTCTGCGCGAGTAGTACTGTGGATAGATTGTGGGGGATTCTAGAGAGGGGTCTAG 418 Query 416 CCTCGAGGGAGAAGGAAGGAGTCAGCTTCTTCGTGAGAACTTATAAAGAGAGAAAAGAGC 475 |||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 419 CCTCCAGAGAGAAGGAAGGCGTCAGCTTCTTCGTGAGAACTTACAAAGAGAGAAAAGAGC 478 Query 476 TGATGAGAGTTGTTGTAACTGTCACAGATTGTCATCAGAATCATAACTTGTACTTCTTCG 535 |||||||||||| ||| ||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 479 TGATGAGAGTTGCTGTCACTGTAACAGATTGTTATCAGAATCATAATTTGTACTTCTTCG 538 Query 536 ACCTCAAGTTCCCTAGGGAGTATCCATATCGAGCACCGAGTTTCTATTACCATCCCTATG 595 ||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||| Sbjct 539 ACCTCAAGTTCCCCAAGGAGTATCCATATCAAGCACCGAGTTTCTATTACCATCCGTATG 598 Query 596 GCCTTCATTTGAGTACTCCTGAAGCCCAAAAGTCATTGAAAGAAAAGTC-CTGCTACAAC 654 ||||| ||||||||||||||||| |||||||||| ||| ||| ||| | |||||||||| Sbjct 599 ACCTTCGTTTGAGTACTCCTGAAGACCAAAAGTCACTGAGAGATAAG-CACTGCTACAAC 657 Query 655 ATCTTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACCAACAAGTCATGT 714 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 658 ATCGTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACTAACAAGTCATGT 717 Query 715 CACCAGATGCTAGATATTCTTGAACAGCCGCTCGCGGGGTTTCAAGATTTCGTAAAAGGG 774 |||||||||||||||| || |||| ||| ||||||||||||||||||||||||| |||| Sbjct 718 AACCAGATGCTAGATATCCTGGAACGGCCACTCGCGGGGTTTCAAGATTTCGTAATAGGG 777 Query 775 TATTTTAGGAGGAAGGGGCCTTTGATTCTGCGGAACTTGCTGCAAGAGTTGGATATGGAG 834 |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 778 TATTTTAGGAAGAAGGGGCCTTTGATTCTGCGGAACATGCTGCAAGAGTTTGATATGGAG 837 Query 835 GAGGAGAGGGACAAGAAAATGTTCTGGAAGTTGTACTTTGCCTTTGAAGGCAATAAAGTT 894 || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 838 GAAGAGAGGGACAAGAAAATGTTCTGGAAGATGTACTTTGCGTTTGAAGGCAATAAAGTT 897 Query 895 TATTGTGAGCAGATTCTGAACAGTGACCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 954 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 898 TATTGTGAGCAGATTCTCAACAGTGATCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 957 Query 955 GAACATACATTAAGCGATTACTACTATGGTTCTTCTTCATCTCCCAACTACCCAACCTAC 1014 || ||||||||||||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 958 GAGTATACATTAAGCGATTACTACTATGG--CT-CATCATCTTCCAACTACCCAACCTAC 1014 Query 1015 ACTCAACGGGATGATGGTATTAAGAAGACATCCAAAATCCAAAGCTTTTGGAGCAAGTAC 1074 |||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| Sbjct 1015 ACTCAAAGGGATGATGGTATCAAGAAGACTTCCAAAA------GCTTTTGGAACAAGTAC 1068 Query 1075 TTGTCTTTGTCTTTCGATT 1093 |||||| ||||||| |||| Sbjct 1069 TTGTCTGTGTCTTTTGATT 1087 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53563981515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5