BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478640
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12775.1 | Symbols: | ubiquitin-conjugating enzyme family p... 1493 0.0
> AT3G12775.1 | Symbols: | ubiquitin-conjugating enzyme family
protein | chr3:4059772-4060944 FORWARD LENGTH=1089
Length=1089
Score = 1493 bits (808), Expect = 0.0
Identities = 1005/1099 (91%), Gaps = 18/1099 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAATAATAATTCT-TTGATTACTAATCTCTTCGAAGGTAGGAATAAAGGTATTGA 59
||||||||| ||| |||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTAATGATAGTTCTAAT-ATTACTAATCTCTTCGAAGGTAGGGATAAAGGTATTGG 59
Query 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGTTTCTACTACTGAGCAGGAAGAAGA 119
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGGTTCTTCTACTGAGCAGGAAGAAGA 119
Query 120 TGAATCCCCAAAA-CTTATACCGGAGTCTAAACCGCAATCGGAAGGTGATAAAGTGGGCG 178
||||| ||||||| ||| ||||||||||||||||| |||||||||||| |||||||| |
Sbjct 120 TGAAT-CCCAAAACCTTGTACCGGAGTCTAAACCGGGATCGGAAGGTGAAAAAGTGGGTG 178
Query 179 ACATCGTTCGTTTTGGAAAAGACAGTTACTTCGTTATTGATATTTTCGAGAAAGAGATCA 238
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ACATCGTTCGTTTTGGTAAAGACAGTTACTTCGTTATTGATATCTTCGAGAAAGAGATCA 238
Query 239 TGGAGTTAGGAGACAAAGTTGATTTAAACTTCAAGAGATTCAAAAGGTTCGAAGCTGTTT 298
||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 239 TGGAGTTAGGAGACAAAGTGGATTTAAACTACAAGAGATTCAAAAAGTTCGAAGCTGTTG 298
Query 299 ATGGAGACGCTCCGCGAGACCATCACTTCTACAACTACCATTGCTGTTACTC-T-TGCTG 356
|||||| |||||||||||| ||||||||||||||||||| |||||||||||| | | |
Sbjct 299 ATGGAGGCGCTCCGCGAGATCATCACTTCTACAACTACCGTTGCTGTTACTCCTCTTATT 358
Query 357 C-TGCGTCTGCTCGAGTAGTACCGTGGGTAGATTGTGGGGGATTCTAGAGACAGGACTAG 415
||||||||| |||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 359 TATGCGTCTGCGCGAGTAGTACTGTGGATAGATTGTGGGGGATTCTAGAGAGGGGTCTAG 418
Query 416 CCTCGAGGGAGAAGGAAGGAGTCAGCTTCTTCGTGAGAACTTATAAAGAGAGAAAAGAGC 475
|||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 CCTCCAGAGAGAAGGAAGGCGTCAGCTTCTTCGTGAGAACTTACAAAGAGAGAAAAGAGC 478
Query 476 TGATGAGAGTTGTTGTAACTGTCACAGATTGTCATCAGAATCATAACTTGTACTTCTTCG 535
|||||||||||| ||| ||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 479 TGATGAGAGTTGCTGTCACTGTAACAGATTGTTATCAGAATCATAATTTGTACTTCTTCG 538
Query 536 ACCTCAAGTTCCCTAGGGAGTATCCATATCGAGCACCGAGTTTCTATTACCATCCCTATG 595
||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 539 ACCTCAAGTTCCCCAAGGAGTATCCATATCAAGCACCGAGTTTCTATTACCATCCGTATG 598
Query 596 GCCTTCATTTGAGTACTCCTGAAGCCCAAAAGTCATTGAAAGAAAAGTC-CTGCTACAAC 654
||||| ||||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||
Sbjct 599 ACCTTCGTTTGAGTACTCCTGAAGACCAAAAGTCACTGAGAGATAAG-CACTGCTACAAC 657
Query 655 ATCTTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACCAACAAGTCATGT 714
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 ATCGTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACTAACAAGTCATGT 717
Query 715 CACCAGATGCTAGATATTCTTGAACAGCCGCTCGCGGGGTTTCAAGATTTCGTAAAAGGG 774
|||||||||||||||| || |||| ||| ||||||||||||||||||||||||| ||||
Sbjct 718 AACCAGATGCTAGATATCCTGGAACGGCCACTCGCGGGGTTTCAAGATTTCGTAATAGGG 777
Query 775 TATTTTAGGAGGAAGGGGCCTTTGATTCTGCGGAACTTGCTGCAAGAGTTGGATATGGAG 834
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 778 TATTTTAGGAAGAAGGGGCCTTTGATTCTGCGGAACATGCTGCAAGAGTTTGATATGGAG 837
Query 835 GAGGAGAGGGACAAGAAAATGTTCTGGAAGTTGTACTTTGCCTTTGAAGGCAATAAAGTT 894
|| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 838 GAAGAGAGGGACAAGAAAATGTTCTGGAAGATGTACTTTGCGTTTGAAGGCAATAAAGTT 897
Query 895 TATTGTGAGCAGATTCTGAACAGTGACCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 954
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TATTGTGAGCAGATTCTCAACAGTGATCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 957
Query 955 GAACATACATTAAGCGATTACTACTATGGTTCTTCTTCATCTCCCAACTACCCAACCTAC 1014
|| ||||||||||||||||||||||||| || | |||||| |||||||||||||||||
Sbjct 958 GAGTATACATTAAGCGATTACTACTATGG--CT-CATCATCTTCCAACTACCCAACCTAC 1014
Query 1015 ACTCAACGGGATGATGGTATTAAGAAGACATCCAAAATCCAAAGCTTTTGGAGCAAGTAC 1074
|||||| ||||||||||||| |||||||| ||||||| ||||||||| |||||||
Sbjct 1015 ACTCAAAGGGATGATGGTATCAAGAAGACTTCCAAAA------GCTTTTGGAACAAGTAC 1068
Query 1075 TTGTCTTTGTCTTTCGATT 1093
|||||| ||||||| ||||
Sbjct 1069 TTGTCTGTGTCTTTTGATT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5