BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478642
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12800.1 | Symbols: SDRB, DECR | short-chain dehydrogenase-r... 1452 0.0
AT1G36580.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 676 0.0
AT2G07640.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 664 0.0
> AT3G12800.1 | Symbols: SDRB, DECR | short-chain dehydrogenase-reductase
B | chr3:4063323-4064822 REVERSE LENGTH=1102
Length=1102
Score = 1452 bits (786), Expect = 0.0
Identities = 873/916 (95%), Gaps = 2/916 (0%)
Strand=Plus/Plus
Query 17 GTGTGTGGTTATGGAGTCTCCGTTCAAACCTGATGTCGTCAGAGGTCAAGTGGCTCTCAT 76
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 GTGTGTGGTTATGGACTCTCCGTTCAAACCTGATGTCGTCAGAGGTCAAGTGGCTCTCAT 115
Query 77 CACCGGTGGTGGATCTGGCATCGGTTTTGAGATCTCTTCTCAGTTTGGCAAACATGGAGC 136
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CACCGGTGGTGGATCCGGTATCGGTTTTGAGATCTCTTCTCAGTTTGGCAAACATGGAGC 175
Query 137 TTCTATCGCTATCATGGGACGCCGGAAACAAGTACTCGACGACGCCGTCTCCGCTCTCCG 196
||||||||||||||||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 176 TTCTATCGCTATCATGGGACGACGAAAACAAGTCCTCGATGACGCCGTCTCTGCTCTTCG 235
Query 197 ATCTCTTGGAATTCAGGCTATTGGATTGGAAGGTGATGTTCGTAAGCAAGAAGATGCGAC 256
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATCTCTTGGAATCCAGGCTATTGGATTGGAAGGTGATGTTCGTAAGCAAGAAGATGCGAG 295
Query 257 AAGAGTTGTGGAAGCAACTTATCAGCATTTTGGTAGAA-TCGATATTCTTGTTAACGCTG 315
|||||||||||||||||||| |||||||||||||| || | ||||||||||||||||| |
Sbjct 296 AAGAGTTGTGGAAGCAACTTTTCAGCATTTTGGTA-AACTTGATATTCTTGTTAACGCCG 354
Query 316 CTGCTGGGAATTTTCTGGCTGCTGCTGAGGATTTGTCTCCTAATGGCTTCAGAACAGTCT 375
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTGCTGGCAATTTTCTGGCTGCTGCTGAGGATTTGTCTCCTAATGGCTTCAGAACAGTCT 414
Query 376 TAGACATTGATGCGGTAGGAACATTCAACATGTGTCACGCAGCTCTCAAGTATCTTAAGA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TAGACATTGATGCGGTAGGAACATTCAACATGTGTCACGCAGCTCTCAAGTATCTTAAGA 474
Query 436 AAGGAGGGCCTGGGAGAGACTCATCAACCGGTGGCGGTTCCATTATTAACATAAGCGCCA 495
|||||| |||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| |
Sbjct 475 AAGGAGCGCCTGGAAGAGACTCATCAAGCGGTGGAGGTTCGATTATTAACATTAGCGCGA 534
Query 496 CTTTGCACTACACAGCTTCTTGGTATCAGATACATGTATCTGCAGCCAAGGCTGCAGTTG 555
||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 535 CTTTGCACTACACGGCTTCTTGGTACCAAATACATGTCTCTGCAGCCAAGGCTGCAGTTG 594
Query 556 ATGCTACAACAAGAAACTTGGCATTGGAGTGGGGAACTGACTACGATATTAGAGTGAACG 615
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 ATGCTACCACAAGAAACTTGGCATTGGAGTGGGGAACTGACTATGATATTAGAGTGAACG 654
Query 616 GGATTGCACCAGGTCCCATTGGAGGTACACCGGGAATGAGTAAACTTGTACCTGAAGAGA 675
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 655 GGATTGCTCCAGGTCCTATTGGAGGTACACCTGGAATGAGTAAACTTGTACCTGAGGAGA 714
Query 676 TTGAAAACAAAACCAGAGAGTACATGCCTCTTTATAAACTTGGAGAGAAGTGGGATATCG 735
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 715 TTGAAAACAAAACCAGAGAGTACATGCCTCTTTATAAAGTTGGAGAGAAGTGGGATATCG 774
Query 736 CAATGGCTGCACTCTACCTCAGCTGTGATTCTGGGAAATATGTGAACGGACTGACAGTGG 795
| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 775 CTATGGCTGCACTCTACCTCAGCTGTGATTCTGGGAAATATGTGAGCGGACTAACAATGG 834
Query 796 TGGTAGATGGAGGACTGTGGCTTAGCAAACCACGCCATTTGCCTAAAGAAGCGGTGAAGC 855
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 835 TGGTAGATGGAGGACTGTGGCTTAGCAAACCTCGCCACTTGCCTAAAGAAGCGGTGAAGC 894
Query 856 AACTCTCTCGTGCGGTGGAGAAGAGGTCTAGGGCCAAGCCTGTTGGTCTGCCGACCAGCA 915
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 895 AACTCTCTCGTGCGGTGGAGAAGAGGTCTAGGGCCAAGCCTGTTGGTCTCCCAACCAGCA 954
Query 916 AGCTGTAGATCATTTG 931
||||||||||||||||
Sbjct 955 AGCTGTAGATCATTTG 970
> AT1G36580.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: short-chain dehydrogenase-reductase B (TAIR:AT3G12800.1);
Has 109 Blast hits to 109 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:13816459-13818556
REVERSE LENGTH=875
Length=875
Score = 676 bits (366), Expect = 0.0
Identities = 451/491 (92%), Gaps = 9/491 (2%)
Strand=Plus/Plus
Query 405 ATGTGTCACGCAGCTCTCAAGTATCTTAAGAAAGGAGGGCCTGGGAGAGACTCATCAACC 464
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 1 ATGTGTCACGCAGCTCTCAAGTATCTTAAGAAAGGAGCGCCTGGAAGAGACTCATCAAGC 60
Query 465 GGTGGCGGTTCCATTATTAACATAAGCGCCACTTTGCACTACACAGCTTCTTGGTATCAG 524
||| | |||| |||||||||| |||||| ||||||||||||||||||||| |||| ||
Sbjct 61 GGT--CAGTTCGATTATTAACAGAAGCGCTACTTTGCACTACACAGCTTCTAGGTACCAA 118
Query 525 ATACATGTATCTGCAGCCAAGGCTGCAGTTGATGCTACAACAAGAAACTTGGCATTGGAG 584
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 ATACATGTATCTGCAGCCAAGGTTGCAGTTGATGCTACCACAAGAAACTTGGCATTGGAG 178
Query 585 TGGGGAACTGACTACGATATTAGAGTGAACGGGATTGCACCAGGTCCCATTGGAGGTACA 644
|||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 179 TGGGGAACTGACTATGATATTAGAGTGAACAGGATTGCTCCAGGTCCTATTGGAGGTACA 238
Query 645 CCGGGAATGAGTAAACTTGTACCTGAAGAGATTGAAAACAAAACCAGAGAGTACATGCCT 704
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 CCGGGAATGAG-----TTGTACCTGAGGAGATTGAAAACAAAACCAGAGAGTACATGCCT 293
Query 705 CTTTATAAACTTGGAGAGAAGTGGGATATCGCAATGGCTGCACTCTACCTCAGCTGTGAT 764
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 294 CTTTATAAACTTGGAGAGAAGTGGGATATCGCAATGGCTGCACTCTACTTGAGCTGTGAT 353
Query 765 TCTGGGAAATATGTGAACGGACTGACAGTGGTGGTAGATGGAGGACTGTGGCTTAGCAAA 824
|||||||||||||||| ||||| ||| |||||||||||| || |||||| |||||||||
Sbjct 354 TCTGGGAAATATGTGAGTGGACTAACACTGGTGGTAGATGCAGAACTGTGTCTTAGCAAA 413
Query 825 CCACGCCATTTG-CCTAAAGAAGCGGTGAAGCAACTCTCTCGTGCGGTGGAGAAGAGGTC 883
|| ||||||||| || |||||||||||||| |||||||||||||| |||| ||||| |||
Sbjct 414 CCTCGCCATTTGGCC-AAAGAAGCGGTGAAACAACTCTCTCGTGCAGTGGCGAAGAAGTC 472
Query 884 TAGGGCCAAGC 894
|||||||||||
Sbjct 473 TAGGGCCAAGC 483
> AT2G07640.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:3220739-3221422 FORWARD LENGTH=471
Length=471
Score = 664 bits (359), Expect = 0.0
Identities = 422/452 (93%), Gaps = 5/452 (1%)
Strand=Plus/Plus
Query 405 ATGTGTCACGCAGCTCTCAAGTATCTTAAGAAAGGAGGGCCTGGGAGAGACTCATCAACC 464
|||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |
Sbjct 1 ATGTGTCACGCAGCTCTCAAGTATCTTAAGAAAGTAGCGCCTGGAAGAGACTCATCAAGC 60
Query 465 GGTGGCGGTTCCATTATTAACATAAGCGCCACTTTGCACTACACAGCTTCTTGGTATCAG 524
||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 GGTGGCGGTTCGATTATTAACATAAGCGCTACTTTGCACTACACAGCTTCTAGGTATCAA 120
Query 525 ATACATGTATCTGCAGCCAAGGCTGCAGTTGATGCTACAACAAGAAACTTGGCATTGGAG 584
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATACATGTATCTGCAGCCAAGGTTGCAGTTGATGCTACCACAAGAAACTTGGCATTGGAG 180
Query 585 TGGGGAACTGACTACGATATTAGAGTGAACGGGATTGC-ACCAGGTCCCATTGGAGGTAC 643
|||||||||||||| ||||||||||||||||| ||||| | ||||||| |||||||||||
Sbjct 181 TGGGGAACTGACTATGATATTAGAGTGAACGGAATTGCTA-CAGGTCCTATTGGAGGTAC 239
Query 644 ACCGGGAATGAGTAAACTTGTACCTGAAGAGATTGAAAACAAAACCAGAGAGTACATGCC 703
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 ACCGGGAATGAGTAAACTTGTACCTGAGGAGATTGAAAACAAAACCAGAGAGTACATGCC 299
Query 704 TCTTTATAAACTTGGAGAGAAGTGGGATATCGCAATGGCTGCACTCTACCTCAGCTGTGA 763
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 300 TCTTTATAAACTTGGAGAGAAGTGGGATATCGCAATGGCTGCACTCTACTTGAGCTGTGA 359
Query 764 TTCTGGGAAATATGTGAACGGACTGACAGTGGTGGTAGATGGAGGACTGTGGCTTAGCAA 823
||||||||||||| ||| ||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 360 TTCTGGGAAATATATGAGTGGACTAACAATGGTGGTAGATGGAGGACTGTGTCTTAGCAA 419
Query 824 ACCACGCCATTTG-CCTAAAGAAGCGGTGAAG 854
||| ||||||||| || ||||| | || ||||
Sbjct 420 ACCTCGCCATTTGGCC-AAAGA-GTGGAGAAG 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5