BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478645
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12820.1 | Symbols: AtMYB10, MYB10 | myb domain protein 10 |... 1267 0.0
> AT3G12820.1 | Symbols: AtMYB10, MYB10 | myb domain protein 10
| chr3:4074158-4075614 REVERSE LENGTH=890
Length=890
Score = 1267 bits (686), Expect = 0.0
Identities = 803/858 (94%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAAAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGT 60
Query 61 GATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTTAAAAATGGTCATCACAATTGGAGA 120
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 61 GATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGA 120
Query 121 TCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATA 180
Query 181 AACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAAGAGGAGGAAGATACCATT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATT 240
Query 241 ATCCAACTTCACCAAACTCATGGAAACAAGTGGTCTAAGATCGCATCCCACTTTCCGGGA 300
||||| ||||||||| || ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 ATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGA 300
Query 301 AGGACAGACAACGAGATCAAGAATGTGTGGAACACTCATCTCAAGAAGCGATTGATGAAG 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 301 AGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAG 360
Query 361 AGAA--ATT-CATCATCATCATCTGATGTTACCCATCATTCAGTGTCCTCTACCTCTTCT 417
|| | ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 361 AGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCT 420
Query 418 TCTTCTTCCTCAATCTCATCAATCTTGAAGGATGTTATTATTATCAGCGAGATGCCTAAC 477
|| |||||||||||||| ||| ||||| |||| |||||||||| || |||| |||||||
Sbjct 421 TCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAAC 480
Query 478 CAGGAAGAGGAGTTTGAGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTTGAT 537
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGAT 540
Query 538 GCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGATTCCTCCTCCTATATCTAAA 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAA 600
Query 598 CCAGACTCACTAGAAATCCATGGGAAATCATCAGATCACGAATTTTGGAGCCGACTGGTT 657
|||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 601 CCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATT 660
Query 658 GAACCAGGGTTCGATGATTACAATGAGTGGCTCAGTTTT-TTGGATAACCAAACTTGCTA 716
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 661 GAACCAGGGTTCGATGATTACAATGAGTGGCTCA-TTTTCTTGGATAACCAAACTTGCTA 719
Query 717 GAACACA-A-GGAGTTGATCCATCATGTCTTACTGTTGCATTGtttttttttCATCTTCT 774
||||||| | |||||||| ||||||||||||| ||||||||||| |||||| | ||| |
Sbjct 720 GAACACACAAGGAGTTGACCCATCATGTCTTATTGTTGCATTGTCTTTTTT-C--CTT-T 775
Query 775 TTCTTTTAGATAAATTGAGAACACACTGTTTTTCTAAAAGCTAGAAATGGAAACTAGAAT 834
| ||| |||||||||||||||||||||||||| |||||||||| | ||||||||| |||
Sbjct 776 GT-TTT-AGATAAATTGAGAACACACTGTTTTTGTAAAAGCTAGTATTGGAAACTAAAAT 833
Query 835 GTAAACAAGTCAGAAGCT 852
|||||| |||||||||||
Sbjct 834 GTAAACGAGTCAGAAGCT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5