BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478646
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12830.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1016 0.0
> AT3G12830.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:4078651-4079608 REVERSE LENGTH=958
Length=958
Score = 1016 bits (550), Expect = 0.0
Identities = 755/846 (89%), Gaps = 45/846 (5%)
Strand=Plus/Plus
Query 35 TCTCTCTCAAA-TCATAACACGAAGAAGATGAAGCAACTGATCCGCCGTCTCTCTCGCGT 93
||||||||||| ||| |||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 66 TCTCTCTCAAAGTCACAACACGAAGACGATGAAGCAACTAATCCGTCGTCTCTCTCGCGT 125
Query 94 CGCTGATTCCGCTCAATACAGTCTCCTCCGCTCCGATTCACAACGACCTAGCCGCCGTTC 153
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 126 CGCTGATTCCGCTCAATACAGTCTCCTCCGTTCCGATTCACAGCGACCTAGCCGCCGTTC 185
Query 154 CGAATCATTCCTCCGTTCTTCGGTGTCTCGCCGCTCAAAGAAGCAAACCTCTTCGGTTCC 213
|||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 186 CGAATCCTTCCTCCGTTCTTCGGTGACTCGCCGCTCAAAGAAGCAAACCTCCTCTGTTCC 245
Query 214 TGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGCGCCGA 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 246 CGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGCGCGGA 305
Query 274 GCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAGGAGTATGGTTA 333
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 306 GCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTATGGTTA 365
Query 334 CGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTACTTGTCTTCGAACGAATCATGGA 393
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 CGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTCCTTGTCTTCGAACGAATCATGGA 425
Query 394 ATCGCTTCGTCTTGGACTTCCGGTGCCGATTGATGTGCAGGATCTAATCGGCGATGAGAC 453
|||||||||||||||||||||||| ||||||||||| |||||||||||||| || | |||
Sbjct 426 ATCGCTTCGTCTTGGACTTCCGGTACCGATTGATGTTCAGGATCTAATCGGTGACGGGAC 485
Query 454 GAGTTGAAGAAGAAGCtttttttttAGAAGGAATCTTGGTAGTTAGACAAGTTAtttttt 513
| ||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||
Sbjct 486 TATTTGAAGAAGAAGCTTTTATTG--GAAGGAATCTTGGTAGTTAGAGAAGTTTTTTTTT 543
Query 514 -ttCTAGATCTGGTTGTTTTTGTTCTGATACTGA-TGAGTCATCATACTTCGTCATT-T- 569
|||||||||||||||||||||||| |||||| | ||||||||||||||||||| | |
Sbjct 544 CTTCTAGATCTGGTTGTTTTTGTTCAGATACT-ACTGAGTCATCATACTTCGTCGTCGTG 602
Query 570 T-GATGTAAATAGGTACATAAttttttttttGTTTCATGGATCCAAAAGTGGAAGAAGAG 628
| |||||||||||||| ||||||||| || |||||||||||||||||| |||
Sbjct 603 TCGATGTAAATAGGTATATAATTTTTC--------CA-GGATCCAAAAGTGGAAGAGGAG 653
Query 629 ACGAATTTAGGGGTTTTCTTTTTCTT-GTTGTT-GCAAATTTCCTAAtttttttCGCCGG 686
||| |||||||| |||||||| |||| |||||| |||||||| |||||||||| ||||||
Sbjct 654 ACGCATTTAGGGATTTTCTTTCTCTTTGTTGTTTGCAAATTTTCTAATTTTTT-CGCCGG 712
Query 687 TTTTAAGAATCGGTTTGAAATTCTTGTGAAGAAGTTTTATATGGAAAATTTTGCATCACT 746
|||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 713 TTTTAAAAATCGGTTTGAAATTCTTGTGAAGTTTTTTTATATGGAAAATTT-GCATCAGT 771
Query 747 TTGGATCTTAATGTATGCACAATTTCTGGGTTTATATGAATTATGATGTGATTCCAGTTT 806
|||||||| | | | | | ||||||||||||| ||| ||||| | | | |||||
Sbjct 772 TTGGATCTC--T-T-T--A-A-TTTCTGGGTTTATTTGAC--ATGAT-T-A--C-AGTTT 816
Query 807 ATTTTTTGTTCAAGTTTATTTACAAAAAGGAGAGGATTTTGATGTTTCACCGATATTATC 866
||||| ||||||||| | |||||||| || | |||||||||||||||||| ||||||
Sbjct 817 -TTTTT-GTTCAAGTTAA---ACAAAAAG-AG-G-ATTTTGATGTTTCACCGAGATTATC 868
Query 867 GGAAGG 872
|| |||
Sbjct 869 GGCAGG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5