BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478647
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12860.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 2492 0.0
> AT3G12860.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr3:4091570-4093921 FORWARD LENGTH=1608
Length=1608
Score = 2492 bits (1349), Expect = 0.0
Identities = 1529/1615 (95%), Gaps = 15/1615 (1%)
Strand=Plus/Plus
Query 1 AAACCCTAATTTCTCTGATTCTTCTCCGGGACGGAAACTGCATAAATACTCGACTTTCAA 60
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 AAACCCTAATTTCTCTTATTCTTCTCCGAAACGGAAACTGCATAAATACTCGATTTTCAA 60
Query 61 TTCAATTTTTAAAAAGACGGCTAGGGTTTTTATAG-CTTCTCTCTACAATGGCGATGTT- 118
|||||||| |||||||||||||||||||||| || |||||||||||||| ||| ||
Sbjct 61 ATCAATTTTGAAAAAGACGGCTAGGGTTTTTACAGAATTCTCTCTACAATGAAGAT-TTA 119
Query 119 TCTTCTTTCCGAATCATCCTCCGGCTACGGATTGTTCGAGGTACACGG-TCTCGATGAGA 177
|||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||
Sbjct 120 TCTTCTTTCCGAATCACCCTCCGGCTACGGATTGTTCGAGGGACACGGTTC-CGATGAGA 178
Query 178 TTGGACAGAACACAGAGGCGGTTCGGAGCTCCGTCTCGGACCTAAGTCGGTTTGGGCGGG 237
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 179 TTGGACAGAACACGGAGGCGGTTCGGAGCTCCGTCTCGGACCTTAGTCGGTTCGGGCGGG 238
Query 238 TCGTCCAGCTCACTGCTTTTCACCC-ATCTCAGTCTGCACTCGATGCTCTTAACCAAATC 296
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 239 TCGTCCAGCTCACTGCTTTTCACCCGTTC-CAGTCTGCACTCGATGCTCTTAACCAAATC 297
Query 297 AACGCCGTCTCTGAAGGATACATGAGTGATGAGCTGAGGAGTTTTCTGGAGTTGAATCTC 356
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 298 AACGCCGTCTCTGAAGGATACATGAGCGATGAGCTGAGAAGTTTTCTGGAGCTGAATCTC 357
Query 357 CCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTATAGTTTGGGAGTGTCTGAGCCTAAAATC 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 358 CCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTTTAGTTTGGGAGTGTCTGAGCCTAAAATC 417
Query 417 GGGTCTTGCATTTTTGAAGCTACAAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAG 476
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTTCTTGCATTTTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAG 477
Query 477 CTTCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACCTAAAGCCTGGTGAT 536
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 478 CTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGAAGCCTGGTGAT 537
Query 537 TTGGAAAAAGCGCAACTTGGACTAGCTCATAGTTACAGCAGAGCAAAGGTGAAGTTCAAT 596
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 TTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAGGTGAAGTTCAAT 597
Query 597 GTTAACCGTGTGGATAACATGGTTATTCAAGCTATTTTCCTACTTGACACACTTGATAAG 656
|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 598 GTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGACACACTTGATAAG 657
Query 657 GATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCGTGGCACTTCCCTGAACTT 716
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 658 GATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCATGGCACTTCCCTGAGCTT 717
Query 717 GTCAAGATAGTCAATGACAACTACCTTTATGCCCGAGTTTCAAAGATTATCGTGGACAAG 776
||||||||||| |||||||||||||| || ||| |||||||||||||||||| ||||||
Sbjct 718 GTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAG 777
Query 777 TCGAAGTTGTCTGAAGAGCACGTCCCTATGCTTACTGAAATCCTGGGTGATGAAGATAAA 836
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 778 TCAAAGTTGTCTGAAGAGCACATCCCTATGCTTACTGAAGCCCTGGGTGATGAAGATAAG 837
Query 837 GCAAGAGAGGTTGTTGAAGCTGGAAAAGCATCTATGGGCCAGGATTTATCACCGGTTGAT 896
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCAAGAGAGGTTATTGAAGCTGGAAAAGCATCTATGGGCCAGGATTTATCACCGGTTGAT 897
Query 897 CTGATCAATGTCCAGAGCTTTGCTCAGAGAGTTATGGACCTTGCCGATTACAGGAAGAAG 956
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 CTGATCAATGTCCAGACCTTTGCTCAGAGAGTTATGGACCTTGCAGATTACAGGAAGAAG 957
Query 957 CTCTATGATTACCTTGTTACTAAAATGAGTGACATTGCTCCAAATTTGGCGTCCTTGATC 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 CTCTATGATTATCTTGTTACTAAAATGAGTGACATTGCTCCAAATTTGGCGGCCTTGATC 1017
Query 1017 GGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCTGACAAATCTTGCCAAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCTGACAAATCTTGCCAAG 1077
Query 1077 TGCCCGTCTTCAACTCTCCAGATTCTTGGTGCTGAGAAGGCACTTTTCAGGGCGCTGAAA 1136
||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1078 TGCCCATCTTCAACCCTCCAGATTCTCGGTGCTGAGAAGGCACTTTTCAGGGCACTGAAA 1137
Query 1137 ACCCGTGGAAACACACCCAAATATGGTCTAATATTCCATTCGTCATTCATTAGCCGTGCA 1196
|| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1138 ACACGTGGAAACACACCCAAATATGGTCTAATATTCCATTCATCATTCATCGGGCGTGCA 1197
Query 1197 TCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGCTCCATAGCTTCC 1256
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1198 TCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCC 1257
Query 1257 CGGATCGATTGTTTCTCTGATAGCAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAA 1316
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1258 CGGATTGATTGTTTCTCAGATAACAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAA 1317
Query 1317 GTGGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCCCCACGTAAGAATGTTGACGTA 1376
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1318 GTAGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCCCCACGTAAGAATGTTGATGTA 1377
Query 1377 ATGAAAGAAGTGATGgaaaatcttgagaagaaagacgagggagaaaaaacagtggaggcc 1436
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1378 ATGAAAGAAGTGTTGGAAAATCTTGAGAAGAAAGACGAGGGAGAAAAAACAGTGGATGCT 1437
Query 1437 tcagagaagaaaaagaagagaaagtcagaggagaaggaggaggagaaggaagaggagaaa 1496
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1438 TCGGAGAAGAAAAAGAAGAGAAAGACAGAGGAGAAGGAGGAGGAGAAGGAAGAGGAGAAA 1497
Query 1497 tcaaagaaaaagaaaaagaaaagcaaagcagtagaaggagaagaaTTGACA--A-CAGAG 1553
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1498 TCAAAGAAAAAGAAAAAGAAAAGCAAAGCAGTAGAAGGAGAGGAATTGACAGCAACAGAT 1557
Query 1554 AATGGTCACAGTaag-aagaagaagaagaaAACTAAGTCACAAGATGATGAATAA 1607
||||| | || || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATGG-C-CA-TA-GCAAGAAGAAGAAGAAAACTAAGTCACAAGATGATGAATAA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5