BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478650
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G12890.1 | Symbols: ASML2 | activator of spomin::LUC2 | chr3... 1520 0.0
> AT3G12890.1 | Symbols: ASML2 | activator of spomin::LUC2 | chr3:4099199-4100473
FORWARD LENGTH=976
Length=976
Score = 1520 bits (823), Expect = 0.0
Identities = 908/948 (96%), Gaps = 9/948 (1%)
Strand=Plus/Plus
Query 1 AAATGGCATCATCTCTTCCTCAGTTCTACGCTGATTTCACAACATTTTCCGGTGAGACTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 23 AAATGGCATCATCTCTTCCTCAGTTCTACGCTGATTTCACAACATTTTCCTGCGAGACTT 82
Query 61 CTTCGCAGTTTCACGGCTCTTCTTCATGTCCCGACGTGGACTCCTCGTTATCCAGCTACC 120
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 83 CTTCGCAGTTTCACGGCTCTTCTTCATGTCCTGACGTGGACTCTTCGTTATCCAGCTACC 142
Query 121 TTGACGACTGTTATGGCTCCTTCAATACCTCTTCTAATCCAGAATCCATCTTTGTACCCC 180
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 143 TCGACGACTGTTATGGCTCCTTCAACACCTCTTCTAATCCAGAATCCATCTTTGTACCCC 202
Query 181 AAGTTTTTGGTATTTCTGACGTCTCTGTGCCTGAATACAACAATTATTACCAGAAAATGA 240
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AAGTCTTTGGGATTTCTGACGTCTCTGTGCCTGAATACAACAATTATTACCAGAAAATGA 262
Query 241 GTGTGAATAATGCCACACAATACTTTCATGGTGGGGATCATCAAGAATACTACGCCTTTT 300
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 263 GTGTGAATAATGCCACACATTACTTTCATGGTGGAGATCATCAAGAATACTACGGCTTTT 322
Query 301 CACCGGAGATCAAGCCCTTGTTCCGTCCGGCCACAGGAGAGCAATCTTGGGGAAATAGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CACCGGAGATCAAGCCCTTGTTCCGTCCGGCCACAGGAGAGCAATCTTGGGGAAATAGTG 382
Query 361 AAGGAGGGATACAGGCTGAGCCAAACACAAAAGTGGGACGCTACTCGGTGGAAGAACGTA 420
||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 383 AAGGAGGGATACAAGCTGAGCCAAATACAAAAGTGGGACGCTATTCGGTGGAGGAACGTA 442
Query 421 AAGACAGAATCATGAGGTACTTGAAGAAGAAGAACCAGCGCAACTTCAATAAGACCATCA 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 443 AAGACAGAATCATGAGGTACTTGAAGAAGAAGAACCAACGCAACTTCAATAAGACCATCA 502
Query 481 AGTATGTGTGTCGTAAAACCCTAGCCGACCGACGTGTTCGTGTTCGCGGCCGATTTGCTA 540
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 503 AGTATGTGTGTCGTAAAACCCTAGCCGACAGGCGTGTTCGTGTTCGCGGCCGATTTGCTA 562
Query 541 GAAATAATGACACATGTGAAGAACAATCTCACATGTCAAAGAATCACAACAACCATTCTG 600
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 563 GAAACAATGACACATGTGAAGAACAACCTCACATGTCTAAGAATCACAACAACCATTCTG 622
Query 601 AAAAAGAGGAAGATATGTTTTCAGGATCAGACGACTATCTAATCCAGATGGAACACGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAAAAGAGGAAGATATGTTTTCAGGATCAGACGACTATCTAATCCAGATGGAACACGATG 682
Query 661 ACGGATGGCTTCACGAAGCAATGTCTAATCTGATTCCTTTTCCTTGTGAATTTGACGCTC 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 683 ACGGATGGCTTCACGAAGCAATGTCCAATCTGATTCCTTTTCCTTGTGAATTTGACGCTC 742
Query 721 CTGGAGATGCTCATCATCCAAACACTTGGAGTTTCTGATGTCACTACCCATCTCATTTAC 780
||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||
Sbjct 743 CTGGAGATGCTCATCATCCAACCAATTGGAGCTTCTGATGTCACTACCTATCTCATTTAC 802
Query 781 TTCCGAATCAATTAATGTCGCTGGCTATTAAATTTTCATCAGTTAGTTTAGTTTTACGTA 840
||||||||||||||||||| || | |||||| ||| ||||||||||||||||||||| ||
Sbjct 803 TTCCGAATCAATTAATGTCTCTAGATATTAAGTTT-CATCAGTTAGTTTAGTTTTAC-TA 860
Query 841 CCAAGCAGCTTATTTATTTTATGGTAGATTTATCATATTGTACTTAATTATTCTTGGGGT 900
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 861 --A-GCAGCTTATTTATTTTATGGTAGATTTATCATATTGTACTTAATTGTTCTTGGGGT 917
Query 901 TATTGAACATGAAGATTAATTCTGTCTAGTGAATAAATAAAAGAACTT 948
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 918 TATTGAACATGAAGATT----CTGTCTAGTGAATAAATAAAAGAACTT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5